-
1
-
-
0036898577
-
Microarray data normalization and transformation
-
J. Quackenbush, "Microarray data normalization and transformation," Nat Genet, vol. 32 Suppl, pp. 496-501, 2002.
-
(2002)
Nat Genet
, vol.32
, Issue.SUPPL.
, pp. 496-501
-
-
Quackenbush, J.1
-
2
-
-
33845412897
-
Pathway and gene-set activation measurement from mRNA expression data: The tissue distribution of human pathways
-
D. M. Levine, D. R. Haynor, J. C. Castle, S. B. Stepaniants, M. Pellegrini, M. Mao, and J. M. Johnson, "Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways," Genome Biol, vol. 7, pp. R93, 2006.
-
(2006)
Genome Biol
, vol.7
-
-
Levine, D.M.1
Haynor, D.R.2
Castle, J.C.3
Stepaniants, S.B.4
Pellegrini, M.5
Mao, M.6
Johnson, J.M.7
-
3
-
-
0034785443
-
Identifying regulatory networks by combinatorial analysis of promoter elements
-
Y. Pilpel, P. Sudarsanam, and G. M. Church, "Identifying regulatory networks by combinatorial analysis of promoter elements," Nat Genet, vol. 29, pp. 153-9, 2001.
-
(2001)
Nat Genet
, vol.29
, pp. 153-159
-
-
Pilpel, Y.1
Sudarsanam, P.2
Church, G.M.3
-
4
-
-
0034616930
-
Functional discovery via a compendium of expression profiles
-
T. R. Hughes, M. J. Marton, A. R. Jones, C. J. Roberts, R. Stoughton, C. D. Armour, H. A. Bennett, E. Coffey, H. Dai, Y. D. He, M. J. Kidd, A. M. King, M. R. Meyer, D. Slade, P. Y. Lum, S. B. Stepaniants, D. D. Shoemaker, D. Gachotte, K. Chakraburtty, J. Simon, M. Bard, and S. H. Friend, "Functional discovery via a compendium of expression profiles," Cell, vol. 102, pp. 109-26, 2000.
-
(2000)
Cell
, vol.102
, pp. 109-126
-
-
Hughes, T.R.1
Marton, M.J.2
Jones, A.R.3
Roberts, C.J.4
Stoughton, R.5
Armour, C.D.6
Bennett, H.A.7
Coffey, E.8
Dai, H.9
He, Y.D.10
Kidd, M.J.11
King, A.M.12
Meyer, M.R.13
Slade, D.14
Lum, P.Y.15
Stepaniants, S.B.16
Shoemaker, D.D.17
Gachotte, D.18
Chakraburtty, K.19
Simon, J.20
Bard, M.21
Friend, S.H.22
more..
-
5
-
-
0036061833
-
Pathway Processor: A tool for integrating whole-genome expression results into metabolic networks
-
P. Grosu, J. P. Townsend, D. L. Hartl, and D. Cavalieri, "Pathway Processor: a tool for integrating whole-genome expression results into metabolic networks," Genome Res, vol. 12, pp. 1121-6, 2002.
-
(2002)
Genome Res
, vol.12
, pp. 1121-1126
-
-
Grosu, P.1
Townsend, J.P.2
Hartl, D.L.3
Cavalieri, D.4
-
6
-
-
0037293075
-
Global functional profiling of gene expression
-
S. Draghici, P. Khatri, R. P. Martins, G. C. Ostermeier, and S. A. Krawetz, "Global functional profiling of gene expression," Genomics, vol. 81, pp. 98-104, 2003.
-
(2003)
Genomics
, vol.81
, pp. 98-104
-
-
Draghici, S.1
Khatri, P.2
Martins, R.P.3
Ostermeier, G.C.4
Krawetz, S.A.5
-
7
-
-
22744458472
-
Pathways to the analysis of microarray data
-
R. K. Curtis, M. Oresic, and A. Vidal-Puig, "Pathways to the analysis of microarray data," Trends Biotechnol, vol. 23, pp. 429-35, 2005.
-
(2005)
Trends Biotechnol
, vol.23
, pp. 429-435
-
-
Curtis, R.K.1
Oresic, M.2
Vidal-Puig, A.3
-
9
-
-
0032919364
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
H. Ogata, S. Goto, K. Sato, W. Fujibuchi, H. Bono, and M. Kanehisa, "KEGG: Kyoto Encyclopedia of Genes and Genomes," Nucleic Acids Res, vol. 27, pp. 29-34, 1999.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
10
-
-
0002386913
-
On the interpretation of χ2 from contingency tables, and the calculation of P
-
R. A. Fisher, "On the interpretation of χ2 from contingency tables, and the calculation of P," Journal of the Royal Statistical Society, vol. 85, pp. 87-94, 1922.
-
(1922)
Journal of the Royal Statistical Society
, vol.85
, pp. 87-94
-
-
Fisher, R.A.1
-
11
-
-
84892241343
-
-
D. Bonchev and D. H. Rouvray, Eds, Springer, New York
-
D. Bonchev and D. Rouvray, Complexity in chemistry, biology and ecology, D. Bonchev and D. H. Rouvray, Eds., Springer, New York, 2005, pp. 191-235.
-
(2005)
Complexity in chemistry, biology and ecology
, pp. 191-235
-
-
Bonchev, D.1
Rouvray, D.2
-
12
-
-
0034609791
-
The large-scale organization of metabolic networks
-
H. Jeong, B. Tombor, R. Albert, Z. N. Oltvai, and A. L. Barabasi, "The large-scale organization of metabolic networks," Nature, vol. 407, pp. 651-4, 2000.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
13
-
-
19344374050
-
Similarities and differences in genome-wide expression data of six organisms
-
S. Bergmann, J. Ihmels, and N. Barkai, "Similarities and differences in genome-wide expression data of six organisms," PLoS Biol, vol. 2, pp. E9, 2004.
-
(2004)
PLoS Biol
, vol.2
-
-
Bergmann, S.1
Ihmels, J.2
Barkai, N.3
-
14
-
-
23144431919
-
PathwayExplorer: Web service for visualizing high-throughput expression data on biological pathways
-
B. Mlecnik, M. Scheideler, H. Hackl, J. Harder, F. Sanchez-Cabo, and Z. Trajanoski, "PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways," Nucleic Acids Res, vol. 33, pp. W633-7, 2005.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Mlecnik, B.1
Scheideler, M.2
Hackl, H.3
Harder, J.4
Sanchez-Cabo, F.5
Trajanoski, Z.6
-
15
-
-
2942517980
-
PathMAPA: A tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis
-
D. Pan, N. Sun, K. H. Cheung, Z. Guan, L. Ma, M. Holford, X. Deng, and H. Zhao, "PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis," BMC Bioinformatics, vol. 4, pp. 56, 2003.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 56
-
-
Pan, D.1
Sun, N.2
Cheung, K.H.3
Guan, Z.4
Ma, L.5
Holford, M.6
Deng, X.7
Zhao, H.8
-
16
-
-
0036578644
-
GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
-
K. D. Dahlquist, N. Salomonis, K. Vranizan, S. C. Lawlor, and B. R. Conklin, "GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways," Nat Genet, vol. 31, pp. 19-20, 2002.
-
(2002)
Nat Genet
, vol.31
, pp. 19-20
-
-
Dahlquist, K.D.1
Salomonis, N.2
Vranizan, K.3
Lawlor, S.C.4
Conklin, B.R.5
-
17
-
-
0242559054
-
Pathway studio-the analysis and navigation of molecular networks
-
A. Nikitin, S. Egorov, N. Daraselia, and I. Mazo, "Pathway studio-the analysis and navigation of molecular networks," Bioinformatics, vol. 19, pp. 2155-7, 2003.
-
(2003)
Bioinformatics
, vol.19
, pp. 2155-2157
-
-
Nikitin, A.1
Egorov, S.2
Daraselia, N.3
Mazo, I.4
-
18
-
-
0036902193
-
Gene expression studies using microarrays: Principles, problems, and prospects
-
D. Murphy, "Gene expression studies using microarrays: principles, problems, and prospects," Adv Physiol Educ, vol. 26, pp. 256-70, 2002.
-
(2002)
Adv Physiol Educ
, vol.26
, pp. 256-270
-
-
Murphy, D.1
|