Increase in Ty1 cDNA recombination in yeast sir4 mutant strains at high temperature

Genetics

Volumn 168, Issue 1, 2004, Pages 89-101

  Radford, Sarah J ^a,b   Boyle, Meredith L ^a,c   Sheely, Catherine J ^a   Graham, Joel ^a,d   Haeusser, Daniel P ^e   Zimmerman, Leigh ^a   Keeney, Jill B ^a  

^a JUNIATA COLLEGE   (United States)

^b UNIVERSITY OF NORTH CAROLINA   (United States)

^c JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d PENNSYLVANIA STATE UNIVERSITY   (United States)

^e WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; RAD52 PROTEIN; SILENT INFORMATION REGULATOR PROTEIN; SILENT INFORMATION REGULATOR PROTEIN 2;

ARTICLE; CHROMATIN STRUCTURE; DNA RECOMBINATION; DNA TRANSPOSITION; FUNGUS MUTANT; GENE EXPRESSION REGULATION; GENETIC IDENTIFICATION; HIGH TEMPERATURE; MOLECULAR CLONING; NONHUMAN; NULL ALLELE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN INTERACTION; REGULATOR GENE; YEAST;

DNA, COMPLEMENTARY; DNA-BINDING PROTEINS; GENE COMPONENTS; GENE LIBRARY; HISTONE DEACETYLASES; IMMUNOBLOTTING; MUTATION; OLIGONUCLEOTIDES; PLASMIDS; RAD52 DNA REPAIR AND RECOMBINATION PROTEIN; RECOMBINATION, GENETIC; RETROELEMENTS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ANALYSIS, DNA; SILENT INFORMATION REGULATOR PROTEINS, SACCHAROMYCES CEREVISIAE; SIRTUINS; TEMPERATURE;

FUNGI; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 5144235404     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.102.012708     Document Type: Article

References (47)

1. ASTROM, S. U., S. M. OKAMURA and J. RINE, 1999 Yeast cell-type regulation of DNA repair. Nature 397: 310.
2. BOEKE, J., H. XU and G. FINK, 1988 A general method for the chromosomal amplification of genes in yeast. Science 239: 280-282.
3. BOEKE, J. D., F. LACROUTE and G. R. FINK, 1984 A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol. Gen. Genet. 197: 345-346.
4. BOULTON, S. J., and S. P. JACKSON, 1998 Components of the Ku-dependent non-homologous end-joining pathway are involved in telomeric length maintenance and telomeric silencing. EMBO J. 17: 1819-1828.
5. BRYK, M., M. BANERJEE, M. MURPHY, K. E. KNUDSEN, D. J. GARFINKEL et al., 1997 Transcriptional silencing of Ty1 elements in the RDN1 locus of yeast. Genes Dev. 11: 255-269.
6. CLIKEMAN, J. A., G. J. KHALSA, S. L. BARTON and J. A. NICKOLOFF, 2001 Homologous recombinational repair of double-strand breaks in yeast is enhanced by MAT heterozygosity through yKU-dependent and -independent mechanisms. Genetics 157: 579-589.
7. CONTE, D., Jr., and M. J. CURCIO, 2000 Fus3 controls Ty1 transpositional dormancy through the invasive growth MAPK pathway. Mol. Microbiol. 35: 415-427.
8. CONTE, D., JR., E. BARBER, M. BANERJEE, D. J. GARFINKEL and M. J. CURCIO, 1998 Posttranslational regulation of Ty1 retrotransposition by mitogen-activated protein kinase Fus3. Mol. Cell. Biol. 18: 2502-2513.
9. CURCIO, M. J., and D. J. GARFINKEL, 1991a Regulation of retrotransposition in Saccharomyces cerevisiae. Mol. Microbiol. 5: 1823-1829.
10. CURCIO, M. J., and D. J. GARFINKEL, 1991b Single-step selection for Ty1 element retrotransposition. Proc. Natl. Acad. Sci. USA 88: 936-940.
11. CURCIO, M. J., and D. J. GARFINKEL, 1992 Posttranslational control of Ty1 retrotransposition occurs at the level of protein processing. Mol. Cell. Biol. 12: 2813-2825.
12. CURCIO, M. J., and D. J. GARFINKEL, 1999 New lines of host defense: inhibition of Ty1 retrotransposition by Fus3p and NER/TFIIH. Trends Genet. 15: 43-45.
13. DEVINE, S. E., and J. D. BOEKE, 1996 Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III. Genes Dev. 10: 620-633.
14. EICHINGER, D. J., and J. D. BOEKE, 1988 The DNA intermediate in yeast Ty1 element transposition copurifies with virus-like particles: cell-free Ty1 transposition. Cell 54: 955-966.
15. ERREDE, B., M. COMPANY, J. D. FERCHAK, C. A. HUTCHISON, III and W. S. YARNELL, 1985 Activation regions in a yeast transposon have homology to mating type control sequences and to mammalian enhancers. Proc. Natl. Acad. Sci. USA 82: 5423-5427.
16. ERREDE, B., M. COMPANY and C. A. HUTCHISON, III, 1987 Ty1 sequence with enhancer and mating-type-dependent regulatory activities. Mol. Cell. Biol. 7: 258-265.
17. GARTENBERG, M. R., 2000 The Sir proteins of Saccharomyces cerevisiae: mediators of transcriptional silencing and much more. Curr. Opin. Microbiol. 3: 132-137.
18. GASSER, S. M., and M. M. COCKELL, 2001 The molecular biology of the SIR proteins. Gene 279: 1-16.
19. HERSKOWITZ, I., J. RINE and J. STRATHERN, 1992 Mating-type determination and mating-type interconversion in Saccharomyces cerevisiae, pp. 583-656 in The Molecular Biology of the Yeast Saccharomyces: Gene Expression, edited by E. W. JONES, J. R. PRINGLE and J. R. BROACH. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
20. JONES, J. S., and L. PRAKASH, 1990 Yeast Saccharomyces cerevisiae selectable markers in pUC18 polylinkers. Yeast 6: 363-366.
21. KEENEY, J. B., and J. D. BOEKE, 1994 Efficient targeted integration at leu1-32 and ura4-294 in Schizosaccharomyces pombe. Genetics 136: 849-856.
22. LAWLER, J. F., JR., D. P. HAEUSSER, A. DULL, J. D. BOEKE and J. B. KEENEY, 2002 Ty1 defect in proteolysis at high temperature. J. Virol. 76: 4233-4240.
23. LEE, B. S., C. P. LICHTENSTEIN, B. FAIOLA, L. A. RINCKEL, W. WYSOCK et al., 1998 Posttranslational inhibition of Ty1 retrotransposition by nucleotide excision repair/transcription factor TFIIH subunits Ssl2p and Rad3p. Genetics 148: 1743-1761.
24. LEE, S. E., F. PAQUES, J. SYLVAN and J. E. HABER, 1999 Role of yeast SIR genes and mating type in directing DNA double-strand breaks to homologous and non-homologous repair paths. Curr. Biol. 9: 767-770.
25. MERKULOV, G. V., K. M. SWIDEREK, C. B. BRACHMANN and J. D. BOEKE, 1996 A critical proteolytic cleavage site near the C terminus of the yeast retrotransposon Ty1 Gag protein. J. Virol. 70: 5548-5556.
26. MERKULOV, G. V., J. F. LAWLER, JR., Y. EBY and J. D. BOEKE, 2001 Ty1 proteolytic cleavage sites are required for transposition: all sites are not created equal. J. Virol. 75: 638-644.
27. MOAZED, D., A. KISTLER, A. AXELROD, J. RINE and A. D. JOHNSON, 1997 Silent information regulator protein complexes in Saccharomyces cerevisiae: a SIR2/SIR4 complex and evidence for a regulatory domain in SIR4 that inhibits its interaction with SIR3. Proc. Natl. Acad. Sci. USA 94: 2186-2191.
28. MONOKIAN, G. M., L. T. BRAITERMAN and J. D. BOEKE, 1994 In-frame linker insertion mutagenesis of yeast transposon Ty1: mutations, transposition and dominance. Gene 139: 9-18.
29. MOORE, S. P., L. A. RINCKEL and D. J. GARFINKEL, 1998 A Ty1 integrase nuclear localization signal required for retrotransposition. Mol. Cell. Biol. 18: 1105-1114.
30. MORILLON, A., M. SPRINGER and P. LESAGE, 2000 Activation of the Kss1 invasive-filamentous growth pathway induces Ty1 transcription and retrotransposition in Saccharomyces cerevisiae. Mol. Cell. Biol. 20: 5766-5776.
31. MORILLON, A., L. BENARD, M. SPRINGER and P. LESAGE, 2002 Differential effects of chromatin and Gcn4 on the 50-fold range of expression among individual yeast Ty1 retrotransposons. Mol. Cell. Biol. 22: 2078-2088.
32. PAQUIN, C., and V. M. WILLIAMSON, 1984 Temperature effects on the rate of Ty transposition. Science 226: 53-55.
33. PAQUIN, C. E., and V. M. WILLIAMSON, 1986 Ty insertions at two loci account for most of the spontaneous antimycin A resistance mutations during growth at 15 degrees C of Saccharomyces cerevisiae strains lacking ADH1. Mol. Cell. Biol. 6: 70-79.
34. PETES, T. D., R. E. MALONE and L. S. SYMINGTON, 1991 Recombination in yeast, pp. 407-421 in The Molecular and Cellular Biology of the Yeast Saccharomyces, edited by J. BROACH, E. JONES and J. PRINGLE. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
35. QIAN, Z., H. HUANG, J. Y. HONG, C. L. BURCK, S. D. JOHNSTON et al., 1998 Yeast Ty1 retrotransposition is stimulated by a synergistic interaction between mutations in chromatin assembly factor I and histone regulatory proteins. Mol. Cell. Biol. 18: 4783-4792.
36. RATTRAY, A. J., and L. S. SYMINGTON, 1995 Multiple pathways for homologous recombination in Saccharomyces cerevisiae. Genetics 139: 45-56.
37. RATTRAY, A. J., B. K. SHAFER and D. J. GARFINKEL, 2000 The Saccharomyces cerevisiae DNA recombination and repair functions of the RAD52 epistasis group inhibit Ty1 transposition. Genetics 154: 543-556.
38. ROSE, M. D., F. WINSTON and P. HIETER, 1990 Methods in Yeast Genetics: A Laboratory Course Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
39. SCHIESTL, R. H., and R. D. GIETZ, 1989 High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier. Curr. Genet. 16: 339-346.
40. SHARON, G., T. J. BURKETT and D. J. GARFINKEL, 1994 Efficient homologous recombination of Ty1 element cDNA when integration is blocked. Mol. Cell. Biol. 14: 6540-6551.
41. SIKORSKI, R. S., and P. HIETER, 1989 A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
42. TSUKAMOTO, Y., J. KATO and H. IKEDA, 1997 Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae. Nature 388: 900-903.
43. VOYTAS, D. F., and J. D. BOEKE, 2002 Ty1 and Ty5 of Saccharomyces cerevisiae, pp. 631-662 in Mobile DNA II, edited by N. L. CRAIG, R. CRAIGIE, M. GELLERT and A. M. LAMBOWITZ. ASM Press, Washington, DC.
44. WYRICK, J. J., F. C. HOLSTEGE, E. G. JENNINGS, H. C. CAUSTON, D. SHORE et al., 1999 Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast. Nature 402: 418-421.
45. XIE, W., X. GAI, Y. ZHU, D. C. ZAPPULLA, R. STERNGLANZ et al., 2001 Targeting of the yeast Ty5 retrotransposon to silent chromatin is mediated by interactions between integrase and Sir4p. Mol. Cell. Biol. 21: 6606-6614.
46. ZHU, Y., S. ZOU, D. A. WRIGHT and D. F. VOYTAS, 1999 Tagging chromatin with retrotransposons: target specificity of the Saccharomyces Ty5 retrotransposon changes with the chromosomal localization of Sir3p and Sir4p. Genes Dev. 13: 2738-2749.
47. ZOU, S., J. M. KIM and D. F. VOYTAS, 1996 The Saccharomyces retrotransposon Ty5 influences the organization of chromosome ends. Nucleic Acids Res. 24: 4825-4831.