SNP ID-info: SNP ID searching and visualization platform

OMICS A Journal of Integrative Biology

Volumn 12, Issue 3, 2008, Pages 217-226

  Yang, Cheng Hong ^a   Chuang, Li Yeh ^b   Cheng, Yu Huei ^a   Wen, Cheng Hao ^d   Chang, Phei Lang ^c   Chang, Hsueh Wei ^d  

^a NATIONAL KAOHSIUNG UNIVERSITY OF APPLIED SCIENCES   (Taiwan)

^b I SHOU UNIVERSITY   (Taiwan)

^c CHANG GUNG UNIVERSITY   (Taiwan)

^d KAOHSIUNG MEDICAL UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CHROMOSOME ANALYSIS; CYTOGENETICS; GENE IDENTIFICATION; GENE SEQUENCE; GENOME; HUMAN; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

ALGORITHMS; ANIMALS; BASE SEQUENCE; DATABASES, GENETIC; HUMANS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 51349114632     PISSN: 15362310     EISSN: None     Source Type: Journal    
DOI: 10.1089/omi.2008.0026     Document Type: Article

References (22)

1. Anzick, S.L., and Trent, J.M. (2002). Role of genomics in identifying new targets for cancer therapy. Oncology 16, 7-13.
2. Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., and Wheeler, D.L. (2006). GenBank. Nucleic Acids Res 34, D16-D20.
3. Chang, H.W., Yang, C.H., Chang, P.L., Cheng, Y.H., and Chuang, L.Y. (2006). SNP-RFLPing: restriction enzyme mining for SNPs in genomes. BMC Genomics 7, 30.
4. Charras, C. (2004). Handbook of Exact String Matching Algorithms (Lightning Source UK Ltd., United Kingdom).
5. Conde, L., Vaquerizas, J.M., Santoyo, J., Al-Shahrour, F., Ruiz-Llorente, S., Robledo, M., et al. (2004). PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level. Nucleic Acids Res 32, W242-W248.
6. Efferth, T., and Volm, M. (2005). Pharmacogenetics for individualized cancer chemotherapy. Pharmacol Ther 107, 155-176.
7. Furuta, I., Kobayashi, N., Fujino, T., Kobamatsu, Y., Shirogane, T., Yaegashi, M., et al. (2004). Bone mineral density of the lumbar spine is associated with TNF gene polymorphisms in early postmenopausal Japanese women. Calcif Tissue Int 74, 509-515.
8. Hemminki, K., Forsti, A., and Lorenzo Bermejo, J. (2005). Single nucleotide polymorphisms (SNPs) are inherited from parents and they measure heritable events. J Carcinog 4, 2.
9. Imyanitov, E.N., Togo, A.V., and Hanson, K.P. (2004). Searching for cancer-associated gene polymorphisms: promises and obstacles. Cancer Lett 204, 3-14.
10. Inoue, I. (2002). SNP database and establishment of personalized medicine. Nippon Yakurigaku Zasshi 120, 41P-42P.
11. Kang, H.J., Choi, K.O., Kim, B.D., Kim, S., and Kim, Y.J. (2005). FESD: a Functional Element SNPs Database in human. Nucleic Acids Res 33, D518-D522.
12. Maglott, D., Ostell, J., Pruitt, K.D., and Tatusova, T. (2005). Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 33, D54-D58.
13. McGinnis, S., and Madden, T.L. (2004). BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res 32, W20-W25.
14. Ollerenshaw, M., Page, T., Hammonds, J., and Demaine, A. (2004). Polymorphisms in the hypoxia inducible factor-1alpha gene (HIF1A) are associated with the renal cell carcinoma phenotype. Cancer Genet Cytogenet 153, 122-126.
15. Pruitt, K.D., and Maglott, D.R. (2001). RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res 29, 137-140.
16. Riva, A., and Kohane, I.S. (2002). SNPper: retrieval and analysis of human SNPs. Bioinformatics 18, 1681-1685.
17. Robert, J., Morvan, V.L., Smith, D., Pourquier, P., and Bonnet, J. (2005). Predicting drug response and toxicity based on gene polymorphisms. Crit Rev Oncol Hematol 54, 171-196.
18. Schuler, G.D. (1997). Sequence mapping by electronic PCR. Genome Res 7, 541-550.
19. Sherry, S.T., Ward, M.H., Kholodov, M., Baker, J., Phan, L., Smiqielski, E.M., et al. (2001). dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29, 308-311.
20. Wang, L., Liu, S., Niu, T., and Xu, X. (2005). SNPHunter: a bioinformatic software for single nucleotide polymorphism data acquisition and management. BMC Bioinformatics 6, 60.
21. Weckx, S., De Rijk, P., Van Broeckhoven, C., and Del-Favero, J. (2005). SNPbox: a modular software package for large-scale primer design. Bioinformatics 21, 385-387.
22. Wheeler, D.L., Barrett, T., Benson, D.A., Bryant, S.H., Canesek, Church, D.M., et al. (2005). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 33, D39-D45.