Phylogeography of the forest herb Carex pilosa (Cyperaceae)

Botanical Journal of the Linnean Society

Volumn 158, Issue 1, 2008, Pages 115-130

  Rejzková, Eva ^a   Fér, Tomáš ^a   Vojta, Jaroslav ^a   Marhold, Karol ^a,b  

^a CHARLES UNIVERSITY   (Czech Republic)

^b INSTITUTE OF BOTANY   (Slovakia)

Author keywords

AFLP; Apennine Peninsula; Balkan; cpDNA; Genetic diversity; Glacial refugia; PCR RFLP

Indexed keywords

DNA; FOSSIL RECORD; GENETIC STRUCTURE; MIGRATION; PHYLOGEOGRAPHY; REFUGIUM; SEDGE; SPECIES DIVERSITY; TEMPERATE FOREST;

ASIA; BALKAN; EURASIA; TURKMENISTAN; WEST ASIA;

CAREX PILOSA; CYPERACEAE;

EID: 51249116449     PISSN: 00244074     EISSN: 10958339     Source Type: Journal    
DOI: 10.1111/j.1095-8339.2008.00826.x     Document Type: Article

References (48)

1. van Andel TH, Tzedakis PC. 1996. Palaeolithic landscapes of Europe and environs, 150 000-25 000 years ago: an overview. Quaternary Science Reviews 15 : 481 500.
2. Bennett KD, Tzedakis PC, Willis KJ. 1991. Quaternary refugia of north European trees. Journal of Biogeography 18 : 103 115.
3. Bohn U, Gollub G, Hettwer C, Neuhäuslová Z, Schlüter H, Weber H, eds. 2003. Karte der natürlichen Vegetation Europas. Bonn : Bundesamt für Naturschutz.
4. Bonin A, Bellemain E, Bronken Eidesen P, Pompanon F, Brochmann C, Taberlet P. 2004. How to track and assess genotyping errors in population genetics studies. Molecular Ecology 13 : 3261 3273.
5. Bonnet E, van de Peer Y. 2002. zt: a software tool for simple and partial Mantel test. Journal of Statistical Software 7 : 1 12.
6. Borcard D, Legendre P, Drapeau P. 1992. Partialling out the spatial component of ecological variation. Ecology 73 : 1045 1055.
7. ter Braak CJF, Šmilauer P. 2002. CANOCO reference manual and CanoDraw for windows user's guide: software for canonical community ordination (version 4.5). Ithaca, NY : Microcomputer Power.
8. Chytrý M, Vicherek J. 1995. Lesní vegetace Národního parku Podyjí/Thayatal. Die Waldvegetation des Nationalparks Podyjí/Thayatal. Prague : Academia.
9. Corander J, Marttinen P, Mäntyniemi S. 2006. Bayesian identification of stock mixtures from molecular marker data. Fishery Bulletin 104 : 550 558.
10. Demesure B, Comps B, Petit RJ. 1996. Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe. Evolution 50 : 2515 2520.
11. Demesure B, Sodzi N, Petit RJ. 1995. A set of universal primers for amplification of polymorphic noncoding regions of mitochondrial and chloroplast DNA in plants. Molecular Ecology 4 : 129 131.
12. Dostál J. 1989. Nová květena ČSSR. Prague : Academia.
13. Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin of the Botanical Society of America 19 : 11 15.
14. Dumolin-Lapègue S, Demesure B, Fineschi S, LeCorre V, Petit RJ. 1997. Phylogeographic structure of white oaks throughout the European continent. Genetics 146 : 1475 1487.
15. Excoffier L, Laval G, Schneider S. 2006. ARLEQUIN version 3.01 an integrated software package for population genetics. URL http://cmpg.unibe.ch/ software/arlequin3 [accessed January 2008 L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes - application to human mitochondrial-DNA restriction data. Genetics 131 : 479 491.
16. Gray AJ, Marshall DF, Raybould AF. 1991. A century of evolution in Spartina-anglica. Advances in Ecological Research 21 : 1 62.
17. Gribova SA, Isachenko TI, Lavrenko EM, eds. 1980. Rastitelnost evropeiskoi chasti SSSR. Leningrad : Nauka.
18. Grivet D, Petit RJ. 2003. Chloroplast DNA phylogeography of the hornbeam in Europe: evidence for a bottleneck at the outset of postglacial colonization. Conservation Genetics 4 : 47 56.
19. Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41 : 95 98.
20. Hawthorne LB. 2006. Hawth's analysis tools v3.26. URL http://www.spatialecology.com/htools [accessed January 2008 M, Fineschi S, Anzidei M, Pastorelli R, Salvini D, Paule L, Frascaria-Lacoste N, Hardy OJ, Vekemans X, Vendramin GG. 2004. Chloroplast DNA variation and postglacial recolonization of common ash (Fraxinus excelsior L.) in Europe. Molecular Ecology 13 : 3437 3452.
21. Hewitt GM. 1999. Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society 68 : 87 112.
22. Hewitt GM. 2001. Speciation, hybrid zones and phylogeography - or seeing genes in space and time. Molecular Ecology 10 : 537 549.
23. King RA, Ferris C. 1998. Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Molecular Ecology 7 : 1151 1161.
24. Kullback S, Leibler RA. 1951. On information and sufficiency. The Annals of Mathematical Statistics 22 : 79 86.
25. Legendre P, Legendre L. 1998. Numerical ecology, English edition, Ed. 2. Amsterdam : Elsevier.
26. Magri D, Vendramin GG, Comps B, Dupanloup I, Geburek T, Gömöry D, Latalowa M, Litt T, Paule L, Roure JM, Tantau I, van der Knaap WO, Petit RJ, de Beaulieu JL. 2006. A new scenario for the Quaternary history of European beech populations: palaeobotanical evidence and genetic consequences. New Phytologist 171 : 199 221.
27. Mantel N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Research 27 : 209 220.
28. Meusel H, Jäger E, Weinert E. 1965. Vergleichende Chorologie der Zentraleuropäischen Flora. Jena : Fischer.
29. Moravec J, Husová M, Neuhäusl R, Neuhäuslová- Novotná Z. 1982. Die Assoziationen mesophiler und hygrophiler Laubwälder in der Tschechischen Sozialistischen Republik. Vegetace ČSR A 12. Prague : Academia.
30. Oberdorfer E. 1992. Süddeutsche Pflanzengesellchaften, Teil IV: Wälder und Gebüsche. Jena : G. Fischer.
31. Palmé AE, Su Q, Rautenberg A, Manni F, Lascoux M. 2003. Postglacial recolonization and cpDNA variation of silver birch, Betula pendula. Molecular Ecology 12 : 201 212.
32. Palmé AE, Vendramin GG. 2002. Chloroplast DNA variation, postglacial recolonization and hybridization in hazel, Corylus avellana. Molecular Ecology 11 : 1769 1780.
33. Petit RJ, Pineau E, Demesure B, Bacilieri R, Ducousso A, Kremer A. 1997. Chloroplast DNA footprints of postglacial recolonization by oaks. Proceedings of the National Academy of Sciences of the United States of America 94 : 9996 10001.
34. Podani J. 2001. SYN-TAX 2000, computer programs for data analysis in ecology and systematics. User's manual. Budapest : Scientia.
35. Schlüter PM, Harris SA. 2006. Analysis of multilocus fingerprinting data sets containing missing data. Molecular Ecology Notes 6 : 569 572.
36. Schönswetter P, Popp M, Brochmann C. 2006. Central Asian origin of and strong genetic differentiation among populations of the rare and disjunct Carex atrofusca (Cyperaceae) in the Alps. Journal of Biogeography 33 : 948 956.
37. Schönswetter P, Tribsch A. 2005. Vicariance and dispersal in the alpine perennial Bupleurum stellatum L. (Apiaceae). Taxon 54 : 725 732.
38. Shaw J, Lickey EB, Beck JT, Farmer SB, Liu WS, Miller J, Siripun KC, Winder CT, Schilling EE, Small RL. 2005. The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany 92 : 142 166.
39. Silander JA. 1985. The genetic-basis of the ecological amplitude of Spartina-patens. 2. Variance and correlation-analysis. Evolution 39 : 1034 1052.
40. StatSoft, Inc. 2001. STATISTICA (data analysis software system), version 6. URL http://www.statsoft.com [accessed January 2008 JR, Lister AM. 2001. Cryptic northern refugia and the origins of the modern biota. Trends in Ecology and Evolution 16 : 608 613.
41. Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF. 1998. Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology 7 : 453 464.
42. Taberlet P, Gielly L, Pautou G, Bouvet J. 1991. Universal primers for amplification of three noncoding regions of chloroplast DNA. Plant Molecular Biology 17 : 1105 1109.
43. Tribsch A, Schönswetter P, Stuessy TF. 2002. Saponaria pumila (Caryophyllaceae) and the Ice Age in the European Alps. American Journal of Botany 89 : 2024 2033.
44. Tyler T. 2002. Large-scale geographic patterns of genetic variation in Melica nutans, a widespread Eurasian woodland grass. Plant Systematics and Evolution 236 : 73 87.
45. Vos P, Hogers R, Bleeker M, Reijans M, Vandelee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M. 1995. AFLP - a new technique for DNA fingerprinting. Nucleic Acids Research 23 : 4407 4414.
46. Willis KJ, Rudner E, Sümegi P. 2000. The full-glacial forests of central and southeastern Europe. Quaternary Research 53 : 203 213.
47. Willis KJ, van Andel TH. 2004. Trees or no trees? The environments of central and eastern Europe during the last glaciation. Quaternary Science Reviews 23 : 2369 2387.
48. Wright S. 1943. Isolation by distance. Genetics 28 : 114 138.