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Volumn , Issue , 2008, Pages 58-62

FPGA-based accelerators for BLAST families with multi-seeds detection and parallel extension

Author keywords

[No Author keywords available]

Indexed keywords

BIOCOMMUNICATIONS; BIOINFORMATICS; BIOMEDICAL ENGINEERING; DATA STORAGE EQUIPMENT; EXPLOSIVES; FIELD PROGRAMMABLE GATE ARRAYS (FPGA); HEURISTIC PROGRAMMING; INFORMATION SCIENCE; PARALLEL ALGORITHMS; PIPELINES; RADIO TELESCOPES;

EID: 51149110718     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICBBE.2008.21     Document Type: Conference Paper
Times cited : (14)

References (22)
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    • S.F.Altschul, W.Gish et al.:Basic local alignment search tool. Molecular Biology (1990) 403-410
    • (1990) Molecular Biology , pp. 403-410
    • Altschul, S.F.1    Gish, W.2
  • 2
    • 84938212725 scopus 로고    scopus 로고
    • NCBI, GenBank Growth Statistics
    • NCBI, GenBank Growth Statistics (2006) http://www.ncbi.nlm.nih.gov/ Genbank/genbankstats.html
    • (2006)
  • 9
    • 43749113173 scopus 로고    scopus 로고
    • D.Lavenier, L.Xinchun, G.Georges.:Seed-based Genomic Sequence Comparison using a FPGA/FLASH Accelerator
    • D.Lavenier, L.Xinchun, G.Georges.:Seed-based Genomic Sequence Comparison using a FPGA/FLASH Accelerator. in IEEE International Conference on Field Programmable Technology (2006) 41-48
    • (2006) IEEE International Conference on Field Programmable Technology , pp. 41-48
  • 12
    • 84938197080 scopus 로고    scopus 로고
    • C.Chang.:BLAST Implementation on BEE2. Electrical Engineering and Computer Science University of California at Berkeley (2005), http://bee2.eecs.berkeley.edu
    • C.Chang.:BLAST Implementation on BEE2. Electrical Engineering and Computer Science University of California at Berkeley (2005), http://bee2.eecs.berkeley.edu
  • 13
    • 51149104415 scopus 로고    scopus 로고
    • CLC Desktop Hardware-Acceleration
    • CLC Desktop Hardware-Acceleration. White paper on CLC Bioinformatics Cube (2006), http://www.clccube.com
    • (2006) White paper on CLC Bioinformatics Cube
  • 16
    • 85029593972 scopus 로고
    • FPGA Implementation of Systolic Sequence Alignment
    • Proc. 2nd International Workshop on Field-Programmable Logic and Applications
    • D.Hoang et al.:FPGA Implementation of Systolic Sequence Alignment. in Proc. 2nd International Workshop on Field-Programmable Logic and Applications, Lecture Notes in Computer Science (1992) 183-191
    • (1992) Lecture Notes in Computer Science , pp. 183-191
    • Hoang, D.1
  • 18
    • 79955148936 scopus 로고    scopus 로고
    • Gene Matching Using JBits
    • Proc. 12th International Conference on Field-Programmable Logic and Applications
    • S.Guccione, E.Keller.:Gene Matching Using JBits. in Proc. 12th International Conference on Field-Programmable Logic and Applications, Lecture Notes In Computer Science, Vol.2438. (2002) 1168-1171
    • (2002) Lecture Notes In Computer Science , vol.2438 , pp. 1168-1171
    • Guccione, S.1    Keller, E.2
  • 20
    • 33846898271 scopus 로고    scopus 로고
    • Families of FPGA-Based Accelerators for Approximate String Matching
    • T.V.Court, M.C.Herbordt.:Families of FPGA-Based Accelerators for Approximate String Matching. Microprocessors and Microsystems, Vol.31. (2007) 135-145
    • (2007) Microprocessors and Microsystems , vol.31 , pp. 135-145
    • Court, T.V.1    Herbordt, M.C.2
  • 22
    • 84938211172 scopus 로고    scopus 로고
    • EBI, European Bioinformatics Institute
    • EBI, European Bioinformatics Institute (2007) http://www.ebi.ac.uk/ uniprot/database/download.html
    • (2007)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.