Non-parametric regression for patch-based fluorescence microscopy image sequence denoising

2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI

Volumn , Issue , 2008, Pages 748-751

  Boulanger, J ^a   Sibarita, J B ^a   Kervrann, C ^b,c   Bouthemy, P ^c  

^a CNRS   (France)

^b CEMAGREF   (France)

^c CAMPUS DE BEAULIEU   (France)

Author keywords

Adaptive estimation; Image sequence denoising; Patch based approach; Poisson noise; Video microscopy

Indexed keywords

ADAPTIVE ESTIMATION; IMAGE SEQUENCE DENOISING; PATCH-BASED APPROACH; POISSON NOISE; VIDEO-MICROSCOPY;

FLUORESCENCE; FLUORESCENCE MICROSCOPY; GAUSSIAN NOISE (ELECTRONIC); LIGHT EMISSION; MICROSCOPIC EXAMINATION; POISSON DISTRIBUTION; POISSON EQUATION; TECHNICAL PRESENTATIONS; TRELLIS CODES;

THREE DIMENSIONAL;

EID: 51049114681     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ISBI.2008.4541104     Document Type: Conference Paper

References (17)

1. J. C. Brailean, R. P. Kleihorst, S. Efstratiadis, A. K. Katsaggelos, and R. L. Lagendijk, "Noise reduction filters for dynamic image sequences: A review," Proc. of the IEEE, vol. 83, no. 9, pp. 1272-1291, Sept. 1995.
2. A. Kuznetsov, V. P. Bindokas, J. D. Marks, and L. H. Philipson, "FRET-based voltage probes for confocal imaging: membrane potential oscillations throughout pancreatic islets," American Journal Physiology - Cell Physiology, vol. 289, no. 1, pp. 224-229, Mar. 2005.
3. N. Rajpoot, Zhen Yao, and R. Wilson, "Adaptive wavelet restoration of noisy video sequences," in Proc. of ICIP'2004, Singapore, 2004, pp. 957-960.
4. F. Shi and I. W. Selesnick, "Video denoising using oriented complex wavelet transforms," in Proc. of the IEEE ICASSP'04, Montreal, May 2004, vol. 2, pp. 949-952.
5. F. Dekeyser, P. Bouthemy, and P. Pérez, "Spatio-temporal Wiener filtering of image sequences using a parametric motion model," in Proc. of ICIP'2000, Vancouver, Canada, Sept. 2000, pp. 208-211.
6. D. Uttenweiler, C. Weber, B. Jähne, R.H. Fink, and H. Scharr, "Spatio-temporal anisotropic diffusion filtering to improve signal to noise ratios and object restoration in fluoresence microscopic image sequences," Journal of Biomedical Optics, vol. 8, no. 1, pp. 40-47, Jan. 2003.
7. A. Buades, B. Coll, and J.-M. Morel, "Denoising image sequences does not require motion estimation," in IEEE International Conference on Advanced Video and Signal Based Surveillance, AVSS 2005, 2005.
8. K. Dabov, V. Foi, A. Katkovnik, and K. Egiazarian, "Image denoising by sparse 3d transform-domain collaborative filtering," IEEE Trans. on IP, vol. 16, no. 8, pp. 2080-2095, Aug. 2007.
9. J. Mairal, G. Sapiro, and M. Elad, "Learning multiscale sparse representation for image and video restoration," SIAM, 2007, submitted.
10. R. M. Willett and R. D. Nowak, "Platelets: a multiscale approach for recovering edges and surfaces in photon-limited medical imaging," IEEE Trans. on TMI, vol. 22, pp. 332-350, Mar. 2003.
11. F. J. Anscombe, "The transformation of Poisson, binomial and negative-binomial data," Biometrika, vol. 35, pp. 246-254, 1948.
12. J.-L. Starck, F. Murtagh, and A. Bijaoui, Image Processing and Data Analysis, the Multiscale Approach, Cambridge University Press, 2000.
13. C. L. Chan, A. K. Katsagellos, and A. V. Sahakian, "Image sequnence filtering in quantum-limited noise with application to low-dose fluoroscopy," IEEE Trans. on TMI, vol. 12, no. 3, pp. 610-621, Sept. 1993.
14. T. Gasser, L. Sroka, and C. Jennen-Steinmetz, "Residual variance and residual pattern in nonlinear regression," Biometrika, vol. 73, pp. 625-633, 1986.
15. L. Stankovic, "Performance analysis of the adaptive algorithm for bias-to-variance tradeoff," IEEE Trans. on SP, vol. 52, no. 5, pp. 1228-1234, May 2004.
16. O. Lepski, "Asymptotically minimax adaptive estimation 1: upper bounds," SIAM Journal Theory of Probability and Application, vol. 36, no. 4, pp. 654-659, 1991.
17. C. Kervrann and J. Boulanger, "Optimal spatial adaptation for patch-based image denoising," IEEE Trans. on IP, vol. 15, no. 10, pp. 2866-2878, 2006.