Active mask segmentation for the cell-volume computation and Golgi-body segmentation of hela cell images

2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI

Volumn , Issue , 2008, Pages 348-351

  Srinivasa, Gowri ^a   Fickus, Matthew ^c   Gonzalez Rivero, Manuel N ^a   Hsieh, Sarah Yichia ^a   Guo, Yusong ^b   Linstedt, Adam D ^b   Kovačević, Jelena ^a  

^a CARNEGIE MELLON UNIVERSITY   (United States)

^b CARNEGIE MELLON UNIVERSITY   (United States)

^c AIR FORCE INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Active contours; Active mask; Segmentation

Indexed keywords

BOOLEAN FUNCTIONS; IMAGE ENHANCEMENT; TECHNICAL PRESENTATIONS;

ACTIVE CONTOURS; ACTIVE MASK; BIOMEDICAL IMAGING; INTERNATIONAL SYMPOSIUM; SEGMENTATION;

CELLS;

EID: 51049113821     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ISBI.2008.4541004     Document Type: Conference Paper

References (15)

1. J. G. Donaldson and J. Lippincott-Schwartz, "Sorting and signaling at the Golgi complex," Cell, vol. 101, no. 7, pp. 693-6, 2000.
2. M. Aridor and L. A. Hannan, "Traffic jam: a compendium of human diseases that affect intracellular transport processes," Traffic, vol. 1, no. 11, pp. 836-51, 2000.
3. M. Aridor and L. A. Hannan, "Traffic jams II: an update of diseases of intracellular transport," Traffic, vol. 3, no. 11, pp. 781-90, 2002.
4. M. A. Puthenveedu and A. D. Linstedt, "Subcompartmentalizing the Golgi apparatus," Curr. Opin. Cell Biol, vol. 17, no. 4, pp. 369-75, 2005.
5. Y. Guo and A. D. Linstedt, "COPII-Golgi protein interactions regulate COPII coat assembly and Golgi size," Journ. Cell Biol., vol. 174, no. 1, pp. 53-56, 2006.
6. J. A. Sethian, Level Set Methods and Fast Marching Methods, Cambridge Univ. Press, 1999.
7. A. Sarti, C. O. Solorzano, S. Lockett, and R. Malladi, "A geometric model for 3-D confocal image analysis," IEEE Trans. Biomed. Eng., vol. 47, no. 12, pp. 1600-1609, 2000.
8. B. Appleton and H. Talbot, "Globally optimal geodesic active contours," Journ. Math. Imag. Vis., vol. 23, no. 1, pp. 67-86, 2005.
9. D. R. Padfield, J. Rittscher, T. Sebastian, N. Thomas, and B. Roysam, "Spatio-temporal cell cycle analysis using 3d level set segmentation of unstained nuclei in line scan confocal fluorescence images," in Proc. IEEE Int. Symp. Biomed. Imaging, Apr. 2006, pp. 1036-1039.
10. L. Coulot, H. Kischner, A. Chebira, J. M. F. Moura, J. Kova¡cevíc, E. G. Osuna, and R. F. Murphy, "Topology preserving STACS segmentation of protein subcellular location images," in Proc. IEEE Int. Symp. Biomed. Imaging, Arlington, VA, Apr. 2006, pp. 566-569.
11. G. Srinivasa, A. Chebira, L. Coulot, H. E. Kirshner, V. S. Oak, J. M. F. Moura, R. F. Murphy, and J. Kovačević, "A flexible active contour algorithm for the segmentation of fluorescence microscope cell images," BMC Bioinformatics, 2007, To submit.
12. G. Srinivasa, M. C. Fickus, and J. Kovačević, "Multiscale active contour transformations for the segmentation of fluorescence microscope images," in Proc. SPIE Conf. Wavelet Appl. in Signal and Image Proc., San Diego, CA, Aug. 2007.
13. X. Han, C. Xu, and J. L. Prince, "A topology preserving level set method for geometric deformable models," IEEE Trans. Patt. Anal. and Mach. Intelligence, vol. 25, no. 6, pp. 755-768, Jun. 2003.
14. L. A. Vese and T. F. Chan, "A multiphase level set framework for image segmentation using the mumford and shah model," Int. Journ. Comp. Vis., vol. 50, no. 3, pp. 271-293, 2002.
15. C. Pluempitiwiriyawej, J. M. F. Moura, Y.-J. L. Wu, and C. Ho, "STACS: A new active contour scheme for cardiac MR image segmentation," IEEE Trans. Med. Imag., vol. 24, no. 5, pp. 593-603, May 2005.