Geometric alignment of 2D gel electrophoresis images using physics-based elastic registration

2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI

Volumn , Issue , 2008, Pages 1135-1138

  Wörz, Stefan ^a   Winz, Marie Luise ^a   Rohr, Karl ^a  

^a UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

Cross effects; Gaussian elastic body splines; Gel electrophoresis; Hybridelastic registration

Indexed keywords

ALIGNMENT; CHLORINE COMPOUNDS; COLLOIDS; DIGITAL ARITHMETIC; ELECTROCHEMISTRY; GELATION; GELS; TECHNICAL PRESENTATIONS;

CROSS-EFFECTS; ELASTIC REGISTRATION; GAUSSIAN ELASTIC BODY SPLINES; GEL ELECTROPHORESIS; HYBRIDELASTIC REGISTRATION;

IMAGE ENHANCEMENT;

EID: 51049111158     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ISBI.2008.4541201     Document Type: Conference Paper

References (15)

1. A.W. Dowsey, M.J. Dunn, and G-Z. Yang, "The role of bioinformatics in two-dimensional gel electrophoresis," Proteomics, vol. 3, no. 8, pp. 1567-1596, 2003.
2. M. Berth, F.M. Moser, M. Kolbe, and J. Bernhardt, "The state of the art in the analysis of two-dimensional gel eletcrophoresis images," Appl. Microbiol. Biotechnol., vol. 76, no. 6, pp. 1223-1243, 2007.
3. B. Zitova and J. Flusser, "Image Registration Methods: a Survey," Image and Vision Computing, vol. 24, pp. 977-1000, 2003.
4. A. Efrat, F. Hoffmann, K. Kriegel, C. Schultz, and C.Wenk, "Geometric algorithms for the analysis of 2D-eletrophoresis gels," Journal of Computational Biology, vol. 9, no. 2, pp. 299-316, 2002.
5. M. Rogers and J. Graham, "Robust and Accurate Registration of 2-D Electrophoresis Gels Using Point-Matching," IEEE Trans. on Image Processing, vol. 16, no. 3, pp. 624-635, 2007.
6. Z. Smilansky, "Automatic Registration for images of two-dimensional protein gels," Electrophoresis, vol. 22, pp. 1616-1626, 2001.
7. S. Veeser, M.J. Dunn, and G.Z. Yang, "Multiresolution image registration for two-dimensional gel electrophoresis," Proteomics, vol. 1, pp. 856-870, 2001.
8. K. Rohr, P. Cathier, and S. Wörz, "Elastic registration of electrophoresis images using intensity information and point landmarks," Pattern Recognition, vol. 37, no. 5, pp. 1035-1048, 2004.
9. M. Rogers, J. Graham, and R.P. Tonge, "2 Dimensional Electrophoresis Gel Registration Using Point Matching and Local Image-Based Refinement," in Proc. 15th British Machine Vision Conference (BMVC'04), A. Hoppe, S. Barman, and T. Ellis, Eds., Kingston, UK, Sep. 2004, BMVA Press.
10. C.Ó.S. Sorzano, P. Thévenaz, and M. Unser, "Elastic Registration of Biological Images Using Vector-Spline Regularization," IEEE Trans. on Biomedical Engineering, vol. 52, no. 4, pp. 652-663, 2005.
11. X. Wang and D.D. Feng, "Hybrid Registration for Two-Dimensional Gel Protein Images," in Proc. 3rd Asia-Pacific Bioinformatics Conf.,
12. Y.-P.P. Chen and L.Wong, Eds., Singapore, Jan. 2005, vol. 1 of Series on Advances in Bioinformatics and Computational Biology, Imperial College Press London.
13. S. Wörz and K. Rohr, "Hybrid Spline-Based Elastic Image Registration Using Analytic Solutions of the Navier Equation," in Proc. Workshop Bildverarbeitung für die Medizin (BVM'07), A. Horsch, T.M. Deserno, H. Handels, H.-P. Meinzer, and T. Tolxdorff, Eds., Munich, Germany, March 2007, Informatik aktuell, pp. 151-155, Springer-Verlag Berlin Heidelberg.
14. J. Kohlrausch, K. Rohr, and H.S. Stiehl, "A New Class of Elastic Body Splines for Nonrigid Registration of Medical Images," J. of Mathematical Imaging and Vision, vol. 23, no. 3, pp. 253-280, 2005.
15. P. Thévenaz, U.E. Ruttimann, and M. Unser, "A Pyramid Approach to Subpixel Registration Based on Intensity," IEEE Trans. on Image Processing, vol. 7, no. 1, pp. 27-41, 1998.