Measuring the similarity of co-regulated genes by integrating quantity and tendency of gene expression changing

2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2008

Volumn , Issue , 2008, Pages 1896-1900

  Wang, Han ^a   Liu, Guixia ^a   Zhou, Chunguang ^a   Liu, Lei ^a   Zheng, Ming ^a   Zheng, Shanhong ^a   Li, Yanwen ^a  

^a JILIN UNIVERSITY   (China)

Author keywords

Clustering; Co regulation genes; Correlation coefficient; Quantity and tendency of gene expression

Indexed keywords

BIOACTIVITY; BIOCOMMUNICATIONS; BIOINFORMATICS; BIOMEDICAL ENGINEERING; CORRELATION METHODS; GENE EXPRESSION; GENES; INFORMATION SCIENCE;

CLUSTERING; CO-REGULATED GENES; CO-REGULATION GENES; CORRELATION COEFFICIENT; QUANTITY AND TENDENCY OF GENE EXPRESSION;

CLUSTERING ALGORITHMS;

EID: 50949124511     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICBBE.2008.803     Document Type: Conference Paper

References (8)

1. Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, Eng JK, BumgarnerR, Goodlett DR, Aebersold R, Hood L: "Integrated genomic and proteomic analyses of a systematically perturbed metabolic network." Science 2001, 292:929-34.
2. Dominic J Allocco, Isaac S Kohane and Atul J Butte, "Quantifying the relationship between co-expression, co-regulation and gene function," BMC Bioinformatics, 2004
3. Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA: "Transcriptional regulatory networks in Saccharomyces cerevisiae." Science 2002, 298:799-804.
4. Ka Yee Yeung, Mario Medvedovic and Roger E Bumgarner: "From coexpression to co-regulation: how many microarray experiments do we need?," Genome Biology 2004, 5:R48
5. Kyungpil Kim, Shibo Zhang, Keni Jiang, Li Cai, In-Beum Lee, Lewis J Feldman and Haiyan Huang, "Measuring similarities between gene expression profiles through new data transformations," BMC Bioinformatics 2007, 8:29 doi:10.1186/1471-2105-8-29
6. Zhu J, Zhang MQ: SCPD: "a promoter database of the yeast Saccharomyces cerevisiae." Bioinformatics 1999, 15:607-611.
7. http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster
8. Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D, Futcher B: "Comprehensive identification of cell cycle- regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization." Mol Biol Cell 1998, 9:3273-3297.