Constrained reduction mapping for a class of network models of genomic regulation

2007 IEEE/NIH Life Science Systems and Applications Workshop, LISA

Volumn , Issue , 2007, Pages 192-195

  Ivanov, Ivan ^a   Vahedi, Golnaz ^b   Dougherty, Edward ^b  

^a TEXAS A AND M UNIVERSITY   (United States)

^b Department of Electrical and Computer Engineering   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENES;

DYNAMICAL PROPERTIES; GENOMIC REGULATION; NETWORK MODELS; SUB-NETWORK; TEMPORAL DATA;

MAPPING;

EID: 50849100412     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/LSSA.2007.4400917     Document Type: Conference Paper

References (9)

1. H. de Jong, "Modeling and Simulation of Genetic Regulatory Systems: A Literature Review", J. of Comp. Biol., V. 9, pp. 67-103, 2002.
2. S. Huang, "Gene expression profiling, genetic networks, and cellular" stales: an integrating concept for tumorigenesis and drug discovery", Journal of Molecular Medicine-Jmm, V. 77, no. 6, pp. 469-480, 1999.
3. I. Ivanov and E.R. Dougherty, 'The role of constraints in designing reduction mappings for network models of genomic regulation", submitted.
4. S. Kauffman, The origins of order: Self-organization and selection in evolution, Oxford University Press, New York, 1993.
5. R. Pal, I. Ivanov, A. Datta, and E. Dougherty, "Generating Boolean Networks with a Prescribed Attractor Structure", Bioinformatics, 21, No. 21. pp. 4021-4025, November, 2005.
6. I. Shmulevich, E. Dougherty, and W. Zhang, "From Boolean to probabilistic Boolean networks as models of genetic regulatory networks", Proc. of the IEEE, V. 90, pp. 1778-1792, 2002.
7. I. Shmulevich and E.R. Dougherty, "Mappings between probabilistic boolean networks", Signal Processing, V. 83, no. 4, pp. 799-809, 203.
8. G. Vahedi, I. Ivanov. and E.R. Dougherty. "Inference of Boolean Networks under Constraint on Bidirectional Gene Relationships", submitted
9. X. Zhou, X. Wang, R. Pal, I. Ivanov, M. Bitner, and E. Dougherty, "A Bayesian Connectivity-based Approach to Constructing Probabilistic Gene Regulatory Networks", Bioinformatics, V. 20. No. 17, pp. 2918-2927 November, 2004.