Structural differences between Pb2+- and Ca2+-binding sites in proteins: Implications with respect to toxicity

Journal of Inorganic Biochemistry

Volumn 102, Issue 10, 2008, Pages 1901-1909

  Kirberger, Michael ^a   Yang, Jenny J ^a  

^a GEORGIA STATE UNIVERSITY   (United States)

Author keywords

Electrostatic; Metalloprotein; Misfolding; Opportunistic binding; Toxicity

Indexed keywords

CALCIUM ION; CALMODULIN; GLUTAMIC ACID; LEAD; METALLOPROTEIN; PORPHOBILINOGEN SYNTHASE; ZINC ION; CALCIUM; LIGAND; PROTEIN;

ARTICLE; BINDING SITE; CALCIUM BINDING; ELECTRICITY; PROTEIN BINDING; PROTEIN FOLDING; PROTEIN STRUCTURE; CHEMISTRY; METABOLISM;

BINDING SITES; CALCIUM; CALMODULIN; LEAD; LIGANDS; PROTEINS;

EID: 50649111872     PISSN: 01620134     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2008.06.014     Document Type: Article

References (85)

1. Ibers J.A., and Holm R.H. Science 209 (1980) 223-235
2. Holm R.H., Kennepohl P., and Solomon E.I. Chem. Rev. 96 (1996) 2239-2314
3. Tainer J.A., Roberts V.A., and Getzoff E.D. Curr. Opin. Biotechnol. 3 (1992) 378-387
4. Glusker J.P. Adv. Protein Chem. 42 (1991) 1-76
5. Silva J.R.R.F.D., and Williams R.J.P. The Biological Chemistry of the Elements: The Inorganic Chemistry of Life (1991), Clarendon Press; Oxford University Press, Oxford [England], New York
6. Lippard S.J., and Berg J.M. Principles of Bioinorganic Chemistry (1994), University Science Books, Mill Valley, California
7. Yamashita M.M., Wesson L., Eisenman G., and Eisenberg D. Proc. Natl. Acad. Sci. USA 87 (1990) 5648-5652
8. Bagley S.C., and Altman R.B. Protein Sci. 4 (1995) 622-635
9. Babor M., Greenblatt H.M., Edelman M., and Sobolev V. Proteins 59 (2005) 221-230
10. Dudev T., and Lim C. Chem. Rev. 103 (2003) 773-787
11. Dudev T., Lin Y.L., Dudev M., and Lim C. J. Am. Chem. Soc. 125 (2003) 3168-3180
12. H. Einspahr, C.E. Bugg, H. Sigel, Calcium and its role in biology, in: M. Dekker (Ed.), Crystal Structure Studies of Calcium Complexes and Implications for Biological Systems, 17, New York, 1984, pp. 52-97.
13. Harding M.M. Acta Crystallogr. D: Biol. Crystallogr. 55 (1999) 1432-1443
14. Harding M.M. Acta Crystallogr. D: Biol. Crystallogr. 56 (2000) 857-867
15. Herzberg O., Moult J., and James M.N. J. Biol. Chem. 261 (1986) 2638-2644
16. Holmes K.C., Popp D., Gebhard W., and Kabsch W. Nature 347 (1990) 44-49
17. Carafoli E. J. Hypertens. Suppl. 12 (1994) S47-S56
18. Santella L., and Carafoli E. Faseb J. 11 (1997) 1091-1109
19. Martin R. Bioinorganic Chemistry of Calcium (1984), Marcel Dekker, New York
20. Nelson M.R., and Chazin W.J. Protein Sci. 7 (1998) 270-282
21. Tajima M., Urabe I., Yutani K., and Okada H. Eur. J. Biochem. 64 (1976) 243-247
22. Forsen S., Thulin E., and Lilja H. FEBS Lett. 104 (1979) 123-126
23. Mills J.S., and Johnson J.D. J. Biol. Chem. 260 (1985) 15100-15105
24. Wang C.L., Leavis P.C., and Gergely J. Biochemistry 23 (1984) 6410-6415
25. Pidcock E., and Moore G.R. J. Biol. Inorg. Chem. 6 (2001) 479-489
26. Yang W., Wilkins A.L., Ye Y., Liu Z.R., Li S.Y., Urbauer J.L., Hellinga H.W., Kearney A., van der Merwe P.A., and Yang J.J. J. Am. Chem. Soc. 127 (2005) 2085-2093
27. Chao S.H., Suzuki Y., Zysk J.R., and Cheung W.Y. Mol. Pharmacol. 26 (1984) 75-82
28. Ferguson C., Kern M., and Audesirk G. Neurotoxicology 21 (2000) 365-378
29. Chao S.H., Bu C.H., and Cheung W.Y. Arch. Toxicol. 69 (1995) 197-203
30. Suzuki Y., Chao S.H., Zysk J.R., and Cheung W.Y. Arch. Toxicol. 57 (1985) 205-211
31. Habermann E., Crowell K., and Janicki P. Arch. Toxicol. 54 (1983) 61-70
32. Kern M., Wisniewski M., Cabell L., and Audesirk G. Neurotoxicology 21 (2000) 353-363
33. Busenlehner L.S., and Giedroc D.P. J. Inorg. Biochem. 100 (2006) 1024-1034
34. Fahmy K., Merroun M., Pollmann K., Raff J., Savchuk O., Hennig C., and Selenska-Pobell S. Biophys. J. 91 (2006) 996-1007
35. Ye J., Kandegedara A., Martin P., and Rosen B.P. J. Bacteriol. 187 (2005) 4214-4221
36. Borremans B., Hobman J.L., Provoost A., Brown N.L., and van Der Lelie D. J. Bacteriol. 183 (2001) 5651-5658
37. Hernandez-Ochoa I., Garcia-Vargas G., Lopez-Carrillo L., Rubio-Andrade M., Moran-Martinez J., Cebrian M.E., and Quintanilla-Vega B. Reprod. Toxicol. 20 (2005) 221-228
38. Apostoli P., Bellini A., Porru S., and Bisanti L. Am. J. Ind. Med. 38 (2000) 310-315
39. Despres C., Beuter A., Richer F., Poitras K., Veilleux A., Ayotte P., Dewailly E., Saint-Amour D., and Muckle G. Neurotoxicol. Teratol. 27 (2005) 245-257
40. Chetty C.S., Reddy G.R., Murthy K.S., Johnson J., Sajwan K., and Desaiah D. Int. J. Toxicol. 20 (2001) 113-120
41. Reddy G.R., and Zawia N.H. Int. J. Dev. Neurosci. 18 (2000) 791-795
42. Moore M.R., Goldberg A., and Yeung-Laiwah A.A. Ann. N.Y. Acad. Sci. 514 (1987) 191-203
43. Atchison W.D. J. Bioenergy Biomembr. 35 (2003) 507-532
44. Chao S.H., Bu C.H., and Cheung W.Y. Arch. Toxicol. 64 (1990) 490-496
45. Markovac J., and Goldstein G.W. Nature 334 (1988) 71-73
46. Bouton C.M., Frelin L.P., Forde C.E., Arnold Godwin H., and Pevsner J. J. Neurochem. 76 (2001) 1724-1735
47. Andersen R.J., diTargiani R.C., Hancock R.D., Stern C.L., Goldberg D.P., and Godwin H.A. Inorg. Chem. 45 (2006) 6574-6576
48. Harding M.M. Acta Crystallogr. D: Biol. Crystallogr. 60 (2004) 849-859
49. Koca J., Zhan C.G., Rittenhouse R.C., and Ornstein R.L. J. Comput. Chem. 24 (2003) 368-378
50. Erskine P.T., Senior N., Awan S., Lambert R., Lewis G., Tickle I.J., Sarwar M., Spencer P., Thomas P., Warren M.J., Shoolingin-Jordan P.M., Wood S.P., and Cooper J.B. Nat. Struct. Biol. 4 (1997) 1025-1031
51. Jaffe E.K., Martins J., Li J., Kervinen J., and Dunbrack Jr. R.L. J. Biol. Chem. 276 (2001) 1531-1537
52. Magyar J.S., Weng T.C., Stern C.M., Dye D.F., Rous B.W., Payne J.C., Bridgewater B.M., Mijovilovich A., Parkin G., Zaleski J.M., Penner-Hahn J.E., and Godwin H.A. J. Am. Chem. Soc. 127 (2005) 9495-9505
53. Yang J.J., Gawthrop A., and Ye Y. Protein Pept. Lett. 10 (2003) 331-345
54. Nelson M.R., Thulin E., Fagan P.A., Forsen S., and Chazin W.J. Protein Sci. 11 (2002) 198-205
55. Strynadka N.C., and James M.N. Annu. Rev. Biochem. 58 (1989) 951-998
56. Yap K.L., Kim J., Truong K., Sherman M., Yuan T., and Ikura M. J. Struct. Funct. Genomics 1 (2000) 8-14
57. Fullmer C.S., Edelstein S., and Wasserman R.H. J. Biol. Chem. 260 (1985) 6816-6819
58. Ouyang H., and Vogel H.J. Biometals 11 (1998) 213-222
59. Kretsinger R.H., and Nockolds C.E. J. Biol. Chem. 248 (1973) 3313-3326
60. Zhou Y., Yang W., Kirberger M., Lee H.W., Ayalasomayajula G., and Yang J.J. Proteins 65 (2006) 643-655
61. Kawasaki H., Nakayama S., and Kretsinger R.H. Biometals 11 (1998) 277-295
62. Sarret G., Manceau A., Spadini L., Roux J.C., Hazemann J.L., Soldo Y., Eybert-Berard L., and Menthonnex J.J. Environ. Sci. Technol. 32 (1998) 1648-1655
63. Harding M.M. Acta Crystallogr. D: Biol. Crystallogr. 58 (2002) 872-874
64. Swain A.L., Kretsinger R.H., and Amma E.L. J. Biol. Chem. 264 (1989) 16620-16628
65. Cruickshank D.W. Acta Crystallogr. D: Biol. Crystallogr. 55 (1999) 583-601
66. W.L. DeLano, The PyMOL Molecular Graphics System, 2002.
67. Marsden B.J., Shaw G.S., and Sykes B.D. Biochem. Cell Biol. 68 (1990) 587-601
68. Godwin H.A. Curr. Opin. Chem. Biol. 5 (2001) 223-227
69. Battistuzzi G., Borsari M., Menabue L., Saladini M., and Sola M. Inorg. Chem. 35 (1996) 4239-4247
70. Shimoni-Livny L., Glusker J.P., and Bock C.W. Inorg. Chem. 37 (1998) 1853-1867
71. Yang W., Lee H.W., Hellinga H., and Yang J.J. Proteins 47 (2002) 344-356
72. Linse S., Brodin P., Johansson C., Thulin E., Grundstrom T., and Forsen S. Nature 335 (1988) 651-652
73. Linse S., and Forsen S. Adv Second Messenger Phosphoprotein Res. 30 (1995) 89-151
74. Yang W., Jones L.M., Isley L., Ye Y., Lee H.W., Wilkins A.L., Liu Z.R., Hellinga H.W., Malchow R., Ghazi M., and Yang J.J. J. Am. Chem. Soc. 125 (2003) 6165-6171
75. Wilson M.A., and Brunger A.T. Acta Crystallogr. D: Biol. Crystallogr. 59 (2003) 1782-1792
76. Honig B., and Nicholls A. Science 268 (1995) 1144-1149
77. Rocchia W., Alexov E., and Honig B. J. Phys. Chem. B 105 (2001) 6507-6514
78. Gilson M.K., and Honig B. Proteins 4 (1988) 7-18
79. Nicholls A., and Honig B. J. Comput. Chem. 12 (1991) 435-445
80. Willard L., Ranjan A., Zhang H., Monzavi H., Boyko R.F., Sykes B.D., and Wishart D.S. Nucleic Acids Res. 31 (2003) 3316-3319
81. McPhalen C.A., Strynadka N.C., and James M.N. Adv. Protein Chem. 42 (1991) 77-144
82. Bergdahl I.A., Grubb A., Schutz A., Desnick R.J., Wetmur J.G., Sassa S., and Skerfving S. Pharmacol. Toxicol. 81 (1997) 153-158
83. Kelada S.N., Shelton E., Kaufmann R.B., and Khoury M.J. Am. J. Epidemiol. 154 (2001) 1-13
84. Erskine P.T., Duke E.M., Tickle I.J., Senior N.M., Warren M.J., and Cooper J.B. Acta Crystallogr. D: Biol. Crystallogr. 56 (2000) 421-430
85. Wang Y., Hemmingsen L., and Giedroc D.P. Biochemistry 44 (2005) 8976-8988