Molecular characterization of a novel family-46 chitosanase from Pseudomonas sp. A-01

Bioscience, Biotechnology and Biochemistry

Volumn 72, Issue 8, 2008, Pages 2074-2081

  Ando, Akikazu ^a   Saito, Akihiro ^a   Arai, Sayaka ^a   Usuda, Sakiko ^a   Furuno, Maiko ^a   Kaneko, Naomi ^a   Shida, Osamu ^b   Nagata, Yoshiho ^a  

^a CHIBA UNIVERSITY   (Japan)

^b Higeta Shoyu Co Ltd   (Japan)

Author keywords

Chitosan; Chitosanase; Family 46; Pseudomonas

Indexed keywords

AMINATION; AMINO ACIDS; CHITIN; CHITOSAN; ORGANIC ACIDS; PURIFICATION;

CHITOSANASE; FAMILY 46; PSEUDOMONAS;

AMINES;

CHITOSANASE; GLYCOSIDASE; METAL; RECOMBINANT PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; DRUG EFFECT; ENZYME ACTIVATION; ENZYME SPECIFICITY; ENZYMOLOGY; GENETICS; HYDROLYSIS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PSEUDOMONAS; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; CONSERVED SEQUENCE; ENZYME ACTIVATION; GLYCOSIDE HYDROLASES; HYDROLYSIS; METALS; MOLECULAR SEQUENCE DATA; MUTATION; PSEUDOMONAS; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; SUBSTRATE SPECIFICITY;

BREVIBACILLUS; BREVIBACILLUS CHOSHINENSIS; PSEUDOMONAS; PSEUDOMONAS SP. A-01; STREPTOMYCES; STREPTOMYCES SP.;

EID: 50649105778     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1271/bbb.80175     Document Type: Article

References (38)

1. Muzzarelli, R. A. A., "Chitin," Pergamon Press, New York (1977).
2. White, S. A., Farina, P. R., and Fulton, I., Production and isolation of chitosan from Mucor rouxii. Appl. Environ. Microbiol., 38, 323-328 (1979).
3. McGahren, W. J., Perkinson, G. A., Growich, J. A., Leese, R. A., and Ellestad, G. A., Chitosan by fermentation. Process Biochem., 19, 88-90 (1984).
4. Miyoshi, H., Shimura, K., Watanabe, K., and Onodera, K., Characterization of some fungal chitosans. Biosci. Biotechnol. Biochem., 56, 1901-1905 (1992).
5. Rane, K. D., and Hoover, D. G., Production of chitosan by fungi. Food Biotechnol., 7, 11-33 (1993).
6. Pochanavanich, P., and Suntornsuk, W., Fungal chitosan production and its characterization. Lett. Appl. Microbiol., 35, 17-21 (2002).
7. Henrissat, B., and Davies, G., Structural and sequence-based classification of glycoside hydrolases. Curr. Opin. Struct. Biol., 7, 637-644 (1997).
8. Henrissat, B., A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J., 280, 309-316 (1991).
9. Henrissat, B., and Bairoch, A., New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J., 293, 781-788 (1993).
10. Henrissat, B., and Bairoch, A., Updating the sequence-based classification of glycosyl hydrolases. Biochem. J., 316, 695-696 (1996).
11. Davies, G., and Henrissat, B., Structures and mechanisms of glycosyl hydrolases. Structure, 3, 853-859 (1995).
12. Fukamizo, T., and Brzezinski, R., Chitosanase from Streptomyces sp. strain N174: a comparative review of its structure and function. Biochem. Cell Biol., 75, 687-696 (1997).
13. Saito, J., Kita, A., Higuchi, Y., Nagata, Y., Ando, A., and Miki, K., Crystal structure of chitosanase from Bacillus circulans MH-K1 at 1.6-Å resolution and its substrate recognition mechanism. J. Biol. Chem., 274, 30818-30825 (1999).
14. Adachi, W., Sakihama, Y., Shimizu, S., Sunami, T., Fukazawa, T., Suzuki, M., Yatsunami, R., Nakamura, S., and Takénaka, A., Crystal structure of family GH-8 chitosanase with subclass II specificity from Bacillus sp. K17. J. Mol. Biol., 343, 785-795 (2004).
15. Marcotte, M. M., Monzingo, A. F., Ernst, S. R., Brzezinski, R., and Robertus, J. D., X-ray structure of an anti-fungal chitosanase from streptomyces N174. Nat. Struct. Biol., 3, 155-162 (1996).
16. Boucher, I., Fukamizo, T., Honda, Y., Willick, G. E., Neugebauer, W. A., and Brzezinski, R., Site-directed mutagenesis of evolutionary conserved carboxylic amino acids in the chitosanase from Streptomyces sp. N174 reveals two residues essential for catalysis. J. Biol. Chem., 270, 31077-31082 (1995).
17. Fukamizo, T., Honda, Y., Goto, S., Boucher, I., and Brzezinski, R., Reaction mechanism of chitosanase from Streptomyces sp. N174. Biochem. J., 311, 377-383 (1995).
18. Yanisch-Perron, C., Vieira, J., and Messing, J., Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene, 33, 103-119 (1985).
19. Vieira, J., and Messing, J., The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene, 19, 259-268 (1982).
20. Hucker, G. J., and Conn, H. J., Methods of Gram staining. NY State Agric. Exp. Stn. Tech. Bull., 93, 3-37 (1923).
21. Toda, T., Flagellar staining. Nippon Iji Shinpo (in Japanese), 283, 113 (1928).
22. Tamaoka, J., and Komagata, K., Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol. Lett., 25, 125-128 (1984).
23. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K., and Komagata, K., Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int. J. Syst. Bacteriol., 47, 289-298 (1997).
24. Sanger, F., Nicklen, S., and Coulson, A. R., DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA, 74, 5463-5467 (1977).
25. Thompson, J. D., Higgins, D. G., and Gibson, T. J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680 (1994).
26. Kimura, M., A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120 (1980).
27. Saitou, N., and Nei, M., The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425 (1987).
28. Felsenstein, J., Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791 (1985).
29. Momose, T., Mukai, Y., Kawabe, S., Suzuki, J., and Yamamoto, K., Effect of coexistent substances on the determination of reducing sugars with 3,6-dinitrophthalic acid. Bunseki Kagaku (in Japanese), 11, 956-959 (1962).
30. Imoto, T., and Yagishita, K., A simple activity measurement of lysozyme. Agric. Biol. Chem., 35, 1154-1156 (1971).
31. Laemmli, U. K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227, 680-685 (1970).
32. Sambrook, J., and Russell, D. W., "Molecular Cloning, a Laboratory Manual" 3rd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor (2001).
33. Masson, J. Y., Denis, F., and Brzezinski, R., Primary sequence of the chitosanase from Streptomyces sp. strain N174 and comparison with other endoglycosidases. Gene, 140, 103-107 (1994).
34. Masson, J. Y., Boucher, I., Neugebauer, W. A., Ramotar, D., and Brzezinski, R., A new chitosanase gene from a Nocardioides sp. is a third member of glycosyl hydrolase family 46. Microbiology, 141, 2629-2635 (1995).
35. Okajima, S., Kinouchi, T., Mikami, Y., and Ando, A., Purification and some properties of a chitosanase of Nocardioides sp. J. Gen. Appl. Microbiol., 41, 351-357 (1995).
36. Saito, J., and Ando, A., The forefront of chitosanase research. Chitin and Chitosan Research (in Japanese), 2, 187-196 (1996).
37. Okajima, S., Ando, A., Shinoyama, H., and Fujii, T., Purification and characterization of an extracellular chitosanase produced by Amycolatopsis sp. CsO-2. J. Ferment. Bioeng., 77, 617-620 (1994).
38. Yoshihara, K., Hosokawa, J., Kubo, T., Nishiyama, M., and Koba, Y., Purification and properties of a chitosanase from Pseudomonas sp. H-14. Biosci. Biotechnol. Biochem., 56, 972-973 (1992).