Provenance services for distributed workflows

Proceedings CCGRID 2008 - 8th IEEE International Symposium on Cluster Computing and the Grid

Volumn , Issue , 2008, Pages 526-533

  Da Cruz, Sérgio Manuel Serra ^a   Barros, Patrícia M ^a   Bisch, Paulo M ^a   Campos, Maria Luiza Machado ^a   Mattoso, Marta ^a  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

CLUSTER COMPUTING; INTERNATIONAL SYMPOSIUM; WORK-FLOWS;

CHLORINE COMPOUNDS; COMPUTER NETWORKS; COMPUTER SYSTEMS; DYNAMICS; EXPERIMENTS; MANAGEMENT; MOLECULAR DYNAMICS; QUANTUM CHEMISTRY; TECHNICAL PRESENTATIONS; WORK SIMPLIFICATION;

GRID COMPUTING;

EID: 50649093804     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CCGRID.2008.73     Document Type: Conference Paper

References (34)

1. D. van der Spoel, E. Lindahl, B. Hess, A. R. van Buuren, E. Apol, P. J. Meulenhoff, D. P. Tieleman, A. L. T. M. Sijbers, K. A. Feenstra, R. van Drunen, and H. J. C. Berendsen, "Gromacs user manual version 3.3" Available: www.gromacs.org, 2006.
2. C. J. Woods, M. Hong Ng, S. Johnston, S. E. Murdock, B. Wu, K. Tai, H. Fangohr, P. Jeffreys, S. Cox, J. G. Frey, M. S.P. Sansom, and J. W. Essex, "Grid computing and biomolecular simulation," Philosophical transactions of the royal society amathematical physical and engineering sciences, 2005, v. 363, pp. 2017-2035.
3. Y. Simmhan, B. Plale, and D. Gannon, "A survey of data provenance in e-science," ACM SIGMOD Record in Special section on Scientific Workflows, 2005, v. 34 (3), pp. 31-36.
4. I. Altintas, C. Berkley, E. Jaeger, M. Jones, B. Ludascher, and S. Mock, "Kepler: An extensible system for design and execution of scientific workflows," In SSDM, 2004, pp. 423-424.
5. T. Oinn, M. Greenwood, M. Addis, M. N. Alpdemir, J. Ferris, K. Glover, C. Goble, A. Goderis, D. Hull, D. Marvin, P. Li, P. Lord, M. R. Pocock, M. Senger, R. Stevens, A. Wipat, and C. Wroe, "Taverna: Lessons in creating a workflow environment for the life sciences," Concur. Comput.: Pract. Exper., 2005, v. 8 (10), pp. 1067-1100.
6. S. P. Callahan, J. Freire, E. Santos, C.E. Scheidegger, C. T. Silva, and H. T. Vo, "Vistrails: Visualization meets data management," In SIGMOD, 2006, pp. 745-747.
7. I. Taylor, M. Shields, I. Wang, and A. Harrison, "The Triana Workflow Environment: Architecture and Applications," In I. Taylor, E. Deelman, D. Gannon, and M. Shields, editors, Workflows for e-Science, Springer, 2007, pp. 320-339.
8. E. Deelman, G. Singh, M. Su, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, G. B. Berriman, J. Good, A. Laity, J. C. Jacob, and D. S. Katz, "Pegasus: a framework for mapping complex scientific workflows onto distributed systems," Scientific Programming Journal, 2005, v. 13(3), pp. 219-237.
9. L. Moreau, J. Freire, J. Futrelle, R. McGrath, J. Myers, J. and P. Paulson, "The Open Provenance Model", Technical Report 14979, ECS EPrints repository. 2007.
10. K. Krauter, R. Buyya, and M. Maheswaran, "A taxonomy and survey of grid resource management systems for distributed computing," Software: Practice and Experience. 2002, v. 32(2) pp.135-164.
11. S. Zanikolas, and R. Sakellariou, "A taxonomy of grid monitoring systems" Future Generation Computer Systems, 2005, v. 21 (1), pp. 163-188.
12. S. Venugopal, R. Buyya, and K. Ramamohanarao, "A taxonomy of data grids for distributed data sharing, management and processing" ACM Computing Surveys, 2006, v. 38 (1), pp. 1-53.
13. R. Stevens, J. Zhao, and C. Goble, "Using provenance to manage Knowledge of in silico experiments," Briefings in Bioinformatics, Oxford Journals, 2007, v. 8, pp. 183-194.
14. O. Biton, S. C. Boulakia, and S. B. Davidson, "UserViews: Querying relevant provenance in workflow systems," In VLDB, 2007, pp. 1366-1369.
15. J. Yu, and R. Buyya, "A taxonomy of scientific workflow system for grid computing,"ACM SIGMOD Record, 2005, v. 34, pp. 44-49.
16. Y. Simmhan, B. Plale, and D. Gannon, "A Framework for Collecting Provenance in Data-Centric Scientific Workflows". In ICWS, 2006, pp 427-436.
17. I. Altintas, A. Birnbaum, K. Balbridge, W. Sudholt, M. Miller, C. Moreira, and Y. Potier, B. Ludaescher, "A framework for the design and reuse of grid workflows," In SAG, LNCS, Springer, 2005, v. 3458, pp. 120-133.
18. S. Bowers, T. M. McPhillips, B. Ludäscher, S. Cohen, and S. Davidson, "A model for user-oriented data provenance in pipelined scientific workflows", In IPAW, 2006, pp. 133-147.
19. H. Yu, M. K. Rosen, N. A. Saccomano, D. Phillips, R. A. Volkmann, and S. Schreiber, "Sequential assignment and structure determination of spider toxin omegaAgalIVB," Biochemistry, 1993, v. 32, pp. 13123.
20. PDB. Available: www.pdb.org/pdb/home/home.do/
21. T. Erl, "SOA: Principles of service design" Prentice Hall, 2007.
22. MPICH2 Available : www.mcs.anl.gov/research/projects/
23. C. Kutzner, D. Van Der Spoel, M. Fechner, E. Lindahl, U.W.Schmitt, B.L. De Groot, and H. Grubmmuller. "Speeding up parallel Gromacs on high-latency networks". Journal of Computational Chemistry, 2007, v. 28(12), pp. 2075-2084.
24. D. Abransom, J. Komminemi and I. Altintas, "Flexible IO services in the Kepler grid workflow system," In International Conference on e-Science and grid computing, 2005.
25. The Gridbus Project. Available: www.gridbus.org/
26. H. Truong, P. Brunner, T. Fahringer, F. Nerieri, R. Samborski, B. Balis, M. Bubak, and K. Rozkwitalski, "KWfGrid Distributed Monitoring and Performance Analysis Services for Workflows in the Grid," 2nd IEEE International Conference on e-Science and Grid, 2006, pp. 15.
27. Z. Zhao, S. Boomns, A. de Laat, and B. Hertzberger, "VLE-WFBus: A scientific workflow bus for multi e-Science domains," Second IEEE International Conference on e-Science and Grid Computing, 2006, pp. 11-11.
28. P.S. Coveney, R.S. Saksena, S.J. Zasada, M. Mckeown and S. Pickles, "The Application Hosting Environment: Lightweight Middleware for Grid-Based Computational Science," Computer Physics Communications, 2007, v. 176, pp. 406-418.
29. GridSAM Available : http://gridsam.sourceforge.net
30. Y. Zhao, M. Hategan, B. Clifford, I. Foster, G. vonLaszewski, I. Raicu, T. Stef-Praun, M. Wilde, "Swift: Fast, Reliable, Loosely Coupled Parallel Computation", IEEE Congress on Services, 2007, pp. 199-206.
31. Karma.. Available : www.extreme.indiana.edu/karma/
32. myGrid, Available:www.mygrid.org.uk
33. S. M. S. Cruz, C., V. Batista, A. M. R. Davila, C. Vilela, M. L. M. Campos, R. Cuadrat, D. Tschoeke, M, Mattoso, "OrthoSearch: A Scientific Workflow Approach to Detect Distant Homologies on Protozoans," In ACM SAC track BIO, 2008, pp. 1281-1285.
34. E. Laure, F. Hemmer, A. Aimar, M. Barroso, P. Buncic, A. Di Meglio, L. Guy, P. Kunszt, S. Beco, F. Pacini, F. Prelz, M. Sgaravatto, A. Edlund, O. Mulmo, D. Groep, S.M. Fisher, and M. Livny, "Middleware for the Next Generation Grid Infrastructure". In Computing in High Energy and Nuclear Physics (CHEP) 2004.