메뉴 건너뛰기




Volumn 24, Issue 17, 2008, Pages 1963-1965

Comparing simulation results of SBML capable simulators

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER MODEL; COMPUTER PROGRAM; COMPUTER SIMULATION; INTERMETHOD COMPARISON; INTERNET; MARKUP LANGUAGE; PRIORITY JOURNAL; SYSTEMS BIOLOGY;

EID: 50549101468     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn319     Document Type: Article
Times cited : (30)

References (17)
  • 1
    • 38549124182 scopus 로고    scopus 로고
    • Bergmann,F. and Sauro,H. (2006) SBW - a modular framework for system biology. In Proceedings of the 38th Conference on Winter Simulation Winter Simulation Conference, Monterey, pp. 1637-1645.
    • Bergmann,F. and Sauro,H. (2006) SBW - a modular framework for system biology. In Proceedings of the 38th Conference on Winter Simulation Winter Simulation Conference, Monterey, pp. 1637-1645.
  • 3
    • 33846205068 scopus 로고    scopus 로고
    • Available from, Last accessed date November 30, 2007
    • Conrad,E. (2006) Oscill8. Available from http://oscill8.sf.net/ (Last accessed date November 30, 2007).
    • (2006) Oscill8
    • Conrad, E.1
  • 4
    • 0004064853 scopus 로고    scopus 로고
    • Prentice-Hall, Inc, Upper Saddle River, NJ, USA
    • Dorf,R. and Bishop,R. (2007) Modern Control Systems. Prentice-Hall, Inc., Upper Saddle River, NJ, USA.
    • (2007) Modern Control Systems
    • Dorf, R.1    Bishop, R.2
  • 5
    • 38349167535 scopus 로고    scopus 로고
    • The SBML discrete stochastic models test suite
    • Evans,T. et al. (2007) The SBML discrete stochastic models test suite. Bioinformatics, 24, 285-286.
    • (2007) Bioinformatics , vol.24 , pp. 285-286
    • Evans, T.1
  • 7
    • 33845368513 scopus 로고    scopus 로고
    • COPASI - a COmplex PAthway SImulator
    • Hoops,S. et al. (2006) COPASI - a COmplex PAthway SImulator. Bioinformatics, 22, 3067-3074.
    • (2006) Bioinformatics , vol.22 , pp. 3067-3074
    • Hoops, S.1
  • 8
    • 0037342537 scopus 로고    scopus 로고
    • The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
    • Hucka,M. et al. (2003) The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 19, 524-531.
    • (2003) Bioinformatics , vol.19 , pp. 524-531
    • Hucka, M.1
  • 9
    • 50549101376 scopus 로고    scopus 로고
    • Köhn,D. and Le Novère,N. (2007) MIASE - Minimum Information About a Simulation Experiment. Available from http://www.ebi.ac.uk/ compneur-srv/miase/ (Last accessed date November 21, 2007).
    • Köhn,D. and Le Novère,N. (2007) MIASE - Minimum Information About a Simulation Experiment. Available from http://www.ebi.ac.uk/ compneur-srv/miase/ (Last accessed date November 21, 2007).
  • 10
    • 33644877164 scopus 로고    scopus 로고
    • BioModels Database: A free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
    • Le Novère,N. et al. (2006) BioModels Database: A free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res., 34, 689-691.
    • (2006) Nucleic Acids Res , vol.34 , pp. 689-691
    • Le Novère, N.1
  • 11
    • 33745631242 scopus 로고    scopus 로고
    • SBMI ODE Solver library: A command-line tool and library for numerical analysis of reaction networks
    • Machné,R. et al. (2006) SBMI ODE Solver library: A command-line tool and library for numerical analysis of reaction networks. Bioinformatics, 22, 1406-1407.
    • (2006) Bioinformatics , vol.22 , pp. 1406-1407
    • Machné, R.1
  • 12
    • 50549093551 scopus 로고    scopus 로고
    • Novell Inc, Available from, Last accessed date August 31, 2007
    • Novell Inc. (2005) The Mono Project. Available from http://www.mono-project.com/ (Last accessed date August 31, 2007).
    • (2005) The Mono Project
  • 13
    • 33845387962 scopus 로고    scopus 로고
    • JSIM: Free software package for teaching physiological modeling and research
    • Raymond,G, et al. (2003) JSIM: Free software package for teaching physiological modeling and research. Exper Biol., 280, 102.
    • (2003) Exper Biol , vol.280 , pp. 102
    • Raymond, G.1
  • 15
    • 50549104066 scopus 로고    scopus 로고
    • SBML.org. (2008) SBML Software Guide. Available from http://sbml.org/ SBML_Software_Guide (Last accessed date May 30, 2008).
    • SBML.org. (2008) SBML Software Guide. Available from http://sbml.org/ SBML_Software_Guide (Last accessed date May 30, 2008).
  • 16
    • 8844269072 scopus 로고    scopus 로고
    • MathSBML: A package for manipulating SBML-based biological models
    • Shapiro,B. et al. (2004) MathSBML: A package for manipulating SBML-based biological models. Bioinformatics, 20, 2829-2831.
    • (2004) Bioinformatics , vol.20 , pp. 2829-2831
    • Shapiro, B.1
  • 17
    • 50549083819 scopus 로고    scopus 로고
    • Available from, Last accessed date May 30, 2008
    • VCell Web (2008) SBMLFeature ToolMatrix. Available from http://ntcnp.org/ twiki/bin/view/VCell/SBMLFeatureToolMatrix (Last accessed date May 30, 2008).
    • (2008) SBMLFeature ToolMatrix
    • VCell Web1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.