Analysis of genetic diversity in Portuguese Ceratonia siliqua L. cultivars using RAPD and AFLP markers

Scientia Horticulturae

Volumn 118, Issue 3, 2008, Pages 189-199

  Barracosa, P ^a   Lima, M B ^b   Cravador, A ^c,d  

^a POLYTECHNIC INSTITUTE OF VISEU   (Portugal)

^b Estacao Agronomica Nacional   (Portugal)

^c UNIVERSITY OF ALGARVE   (Portugal)

^d UNIVERSITY OF TRÁS OS MONTES AND ALTO DOURO   (Portugal)

Author keywords

AFLP; Carob; Ceratonia siliqua; Genetic diversity; Leguminosae; RAPD

Indexed keywords

AGROINDUSTRY; COMPARATIVE STUDY; CULTIVAR; EVERGREEN TREE; FRUIT; GENETIC MARKER; GENETIC VARIATION; LEGUME; MORPHOLOGY; POLYMORPHISM;

ALGARVE; EURASIA; EUROPE; PORTUGAL; SOUTHERN EUROPE;

CERATONIA SILIQUA; FABACEAE; LEPTOSPIRA;

EID: 50549101361     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2008.06.020     Document Type: Article

References (31)

1. Alali F.Q., Tawaha K., El-Elimat T., Syouf M., El-Fayad M., Abulaila K., Nielsen S.J., Wheaton W.D., Falkinham III J.O., and Oberlies N.H. Antioxidant activity and total phenolic content of aqueous and methanolic extracts of Jordanian plants: an ICBG project. Nat. Product Res. 21 12 (2007) 1121-1131
2. Battle I., and Tous J. Carob Tree. Ceratonia siliqua L. Promoting the Conservation and Use of Underutilized and Neglected Crops (1997), Institute of Plant Genetics and Crop Plant Research, International Plant Genetic Resources Institute, Rome, Italy
3. Barracosa, P., Graça, J., 2006. Fichas de caracterização - Alfarrobeira. In: Caracterização de variedades regionais Portuguesas. Ministério da Agricultura, do Desenvolvimento Rural e Pescas. Direcção-Geral de Protecção das Culturas, Oeiras, Portugal, pp. 1-16.
4. Barracosa P., Osório J., and Cravador A. Evaluation of fruit and seed diversity and characterization of carob (Ceratonia siliqua L.) cultivars in Algarve region. Sci. Horticult. 114 (2007) 250-257
5. Batista M.T., Amaral M.T., and Proença Da Cunha A. Carob fruits as source of natural oxidants. Communication in 3rd International carob symposium. Tavira, Portugal, 19-23 June (1996)
6. Brito de Carvalho J.H. Criteria for evaluation of carob varieties. Proceedings of the II International Carob Symposium. Valencia, Spain, September 29-October 1 (1988) 558-566
7. Capo-chichi L.J.A., Weaver D.B., and Morton C.M. AFLP assessment of genetic variability among velvetbean (Mucuna sp.) accessions. Theor. Appl. Genet. 103 (2001) 1180-1188
8. Graça, J., Custódio, S., 2000. Caracterização da Fileira da Alfarroba. In: Sistemas Agrários Tradicionais no Algarve, Contributos para o seu Estudo. Direcção Regional de Agricultura do Algarve, Faro, Portugal, pp. 99-157.
9. Gower J.C. Some distance properties of latent root and vector methods used in multivariate analysis. Iometrika 53 (1966) 325-338
10. Lin J.J., Kuo J., Ma J., Saunders J.A., Beard H.S., Macdonald M.H., Kenworthy W., Ude G.N., and Matthews B.F. Identification of molecular markers in soybean comparing RFLP, RAPD and AFLP DNA mapping techniques. Plant Mol. Biol. Rep. 14 (1996) 156-169
11. Makrem A., Najed B.F., Laarbi K.M., and Boussaid M. Genetic diversity in Tunisian Ceratonia siliqua L. (Caesalpinioideae) natural populations. Genet. Resour. Crop Evol. 53 (2006) 1501-1511
12. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res. 27 (1967) 209-220
13. Makris D., and Kefalas P. Carob pods (Ceratonia siliqua L.) as a source of polyphenolic antioxidants. Food Technol. Biotechnol. 42 2 (2004) 105-108
14. Nienhuis J., Slocum M.K., De Vos D.A., and Muren R. Genetic similarity among Brassica oleraceae genotypes as measured by restriction fragment lenght polymorphisms. J. Am. Soc. Horticult. Sci. 118 (1993) 298-303
15. O'Neill N.R., van Berkum P., Lin J.J., Kuo J., Ude G.N., Kenworthy W., and Saunders J.A. Application of amplified restriction fragment length polymorphism for genetic characterization of Colletotrichum pathogens of Alfalfa. Phytopathology 87 (1997) 745-750
16. Pavlicek A., Hrda S., and Flegr J. Freetree - Freeware program for construction of phylogenetic trees on the basis of distance data and bootstrap/jackknife analysis of the tree robustness. Application in the RAPD analysis of the genus Frenkelia. Folia Biol. (Praha) 45 (1999) 97-99
17. Pejic I., Ajmone-Marsan P., and Morgante M. Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs and AFLPs. Theor. Appl. Genet. 97 (1998) 1248-1255
18. Powell W., Morgante M., Andre C., Hanafey M., Vogel J., Tingey S., and Rafalasky A. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed 3 (1996) 225-238
19. Rohlf F.J. NTSYS-pc Numerical Taxonomy and Multivariate Analysis System. vers. 2. 02f Exeter Software (1998), Setauket, New York, USA
20. Russel J.R., Fuller J.D., Macaulay M., Hatz B.G., Jahoor A., Powell W., and Waugh R. Direct comparison of the levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs. Theor. Appl. Genet. 95 (1997) 714-722
21. Sneath P.H.A., and Sokal R.R. Numerical Taxonomy (1973), Freeman, London
22. Talhouk S.N., Breugel P., Zurayk R., Al-Khatib A., Estephan J., Ghalayini A., Debian N., and Lychaa D. Status and prospects for the conservation of remant semi-natural carob Ceratonia siliqua L. populations in Lebanon. Forest Ecol. Manage. 206 (2005) 49-59
23. Tous J., Olarte C., Truco M.J., and Arús P. Isozyme polymorphisms in carob cultivars. Hortscience 27 3 (1992) 257-258
24. Tous J., and Battle I. El Algarrobo (1990), Ed. Mundi-Prensa, Madrid, Spain
25. Ude G.N., Devine T.E., Kuykendall L.D., Mathews B.F., Saunders J.A., Kenworthy W., and Lin J.J. Molecular mapping of the soybean nodulation gene, Rj4. Symbiosis 26 (1999) 101-110
26. Ude G., Pillay M., Ogundiwin E., and Tenkouano A. Genetic diversity in an Africain plantain core collection using AFLP and RAPD markers. Theor. Appl. Genet. 107 2 (2003) 248-255
27. Zabeau, M., Vos, P., 1993. Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Application 924026 2.7. Publication number 0534858A1.
28. Zohary, M., 1973. Geobotanical Foundations of the Middle East, 2 vols. Stuttgart.
29. Vourdoubas, J., Makris, P., Kefalas, J., Kaliakatsos, G., 2002. In: Proceedings of the 12th National Conference and Technology Exhibition on Biomass for Energy, Industry and Climate Protection, Amsterdam, pp. 489-493.
30. Williams J.G.K., Kubelik A.R., Liva K.J., Rafalsky J.A., and Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic. Acids Res. 18 (1990) 6531-6535
31. Winer N. The potential of the carob (Ceratonia siliqua). Int. Tree Crops J. 1 (1980) 15-26