Sircah: A tool for the detection and visualization of alternative transcripts

Bioinformatics

Volumn 24, Issue 17, 2008, Pages 1959-1960

  Harrington, Eoghan D ^a   Bork, Peer ^a,b  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^b MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; COMPUTER PROGRAM; DATA ANALYSIS SOFTWARE; EXON; GENETIC DATABASE; GENETIC MODEL; GENETIC TRANSCRIPTION; IMAGE PROCESSING; IMAGE QUALITY; INTRON; POLYADENYLATION; PRIORITY JOURNAL; RNA SPLICING; TRANSCRIPTION INITIATION;

ALGORITHMS; BASE SEQUENCE; COMPUTER GRAPHICS; MOLECULAR SEQUENCE DATA; RNA SPLICE SITES; SEQUENCE ANALYSIS, DNA; SOFTWARE; TRANSCRIPTION FACTORS; USER-COMPUTER INTERFACE;

EID: 50549085304     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn361     Document Type: Article

References (6)

1. Bollina,D. et al. (2006) Asgs: An alternative splicing graph web service. Nucleic Acids Res., 34 (Web Server issue), W444-W447.
2. Emrich,S.J. et al. (2007) Gene discovery and annotation using lcm-454 transcriptome sequencing. Genome Res., 17, 69-73.
3. Heber,S. et al. (2002) Splicing graphs and est assembly problem. Bioinformatics, 18 (Suppl. 1), S181-S188.
4. Kelso,J. et al. (2003) evoc: A controlled vocabulary for unifying gene expression data. Genome Res., 13, 1222-1230.
5. Kim,N. et al. (2006) The asap ii database: Analysis and comparative genomics of alternative splicing in 15 animal species. Nucleic Acids Res., 35 (Database Issue), D93-D98.
6. Stamm,S. et al. (2006) Asd: A bioinformatics resource on alternative splicing. Nucleic Acids Res., 34 (Database issue), D46-D55.