Rapid extraction of 3D regions of interest from digital holograms

Oceans Conference Record (IEEE)

Volumn , Issue , 2007, Pages

  Li, Weichang ^a   Loomis, Nick ^b   Hu, Qiao ^a   Davis, Cabell ^a  

^a WOODS HOLE OCEANOGRAPHIC INSTITUTION   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; BOOLEAN FUNCTIONS; COMPUTER NETWORKS; D REGION; DATA REDUCTION; DEGREES OF FREEDOM (MECHANICS); DIGITAL ARITHMETIC; ELECTRON HOLOGRAPHY; HOLOGRAMS; IMAGE ENHANCEMENT; IMAGE PROCESSING; IMAGE RECONSTRUCTION; IMAGE SEGMENTATION; IONOSPHERE; LITHOGRAPHY; OCEAN HABITATS; REPAIR; RESTORATION; SIGNAL DETECTION; STATISTICAL METHODS;

DIGITAL HOLOGRAMS; FOCUS DETECTION; REGIONS OF INTEREST;

OBJECT RECOGNITION;

EID: 50449085070     PISSN: 01977385     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/OCEANS.2007.4449369     Document Type: Conference Paper

References (26)

1. N. Loomis, J. Dominguez-Caballero, W. Li, Q. Hu, C. Davis, J. Milgram, and G. Barbastathis, "A compact, low-power digital holographic imaging system for automated plankton taxonomical classification," in Fourth International Zooplankton Symposium, May 28, 2007, Hiroshima, Japan, 2007.
2. S. K. Jericho, J. Garcia-Sucerquia, W. Xu, M. H. Jericho, and H. J. Kreuzer, "Submersible digital in-line holographic microscope," Rev. Sci. Instrum., vol. 77, p. 043706, 2006.
3. W. B. Xu, M. H. Jericho, I. A. Meinertzhagen, and H. J. Kreuzer, "Digital in-line holography for biological applications," Proc. Natl. Acad. Sci. U.S.A, vol. 98, pp. I 1 301- 11 305, 2001.
4. E. Malkiel, J. N. Abras, E. A. Widder, and J. Katz, "On the spatial distribution and nearest neighbor distance between particles in the water column determined from in situ holographic measurements," J. Plankton Res., vol. 28, no. 2, pp. 149-170, Feb. 2006.
5. E. Malkiel, J. Sheng, J. Katz, and J. Strickler, "The three dimensional flow field generated by a feeding calanoid copepod measured using digital holography," J. Exp. Biol., vol. 206, pp. 3657-3666, 2003.
6. O. Malkiel, E.and Alquaddoomi and J. Katz, "Measurements of plankton distribution in the ocean using submersible holography," Meas. Sci. Technol., vol. 10, pp. 1142-1152, 1999.
7. D. Pfitsch, E. Malkiel, Y. Ronzhes, S. King, J. Sheng, and J. Katz, "Development of a free-drifting submersible digital holographic imaging system," in OCEANS, 2005. Proceedings of MTSIIEEE, Jan. 2005, pp. 690- 696 Vol. 1-690- 696 Vol. 1.
8. J. Sheng, E. Malkiel, and J. Katz, "Digital holographic microscope for measuring three- dimensional particle distributions and motions," Appl. Optics, vol. 41, pp. 3893-3901, 2006.
9. J. H. Milgram and W. Li, "Computational Reconstruction of Images from Holograms," Applied Optics, vol. 41, no. 5, pp. 853-864, Jan. 2002.
10. J. Watson, H. Sun, D. Hendry, and M. Player, "Optical configurations for oceanographic applications of eHolography," in Oceans 2005 - Europe, vol. 2, Jan. 2005, pp. 1214- 1219 Vol. 2-1214- 1219 Vol. 2.
11. J. Watson, M. Player, H. Sun, D. Hendry, and H. Dong, "eHoloCam - an electronic holographic camera for subsea analysis," in OCEANS '04. MTSIIEEE TECHNO-OCEAN '04, vol. 3, Jan. 2004, pp. 1248- 1254 Vol.3-1248- 1254 Vol.3.
12. J. Watson, S. Alexander, V. Chalvidan, G. Craig, A. Diard, G. Foresti, S. Gentili, D. Hendry, P. Hobson, R. Lampitt, H. Nareid, J. Nebrensky, A. Pescetto, G. Pieroni, M. Player, K. Saw, S. Serpico, K. Tipping, and A. Trucco, "A holographic system for subsea recording and analysis of plankton and other marine particles (HOLOMAR)," in OCEANS 2003. Proceedings, vol. 2, Jan. 2003, pp. 830- 837 Vol.2-830- 837 Vol.2.
13. P. Hobson, V. Chalvidan, G. Craig, G. Foresti, S. Gentili, R. Lampitt, B. Lucas-Leclin, H. Nareid, J. Nebrensky, A. Pescetto, G. Pieroni, M. Player, S. Serpico, K. Tipping, A. Trucco, and J. Watson, "A camera to record underwater particles using simultaneous in-line and off-axis hologrammetry and its associated replay facility," in Lasers and Electro-Optics Europe, 2000. Conference Digest. 2000 Conference on, Jan. 2000, pp. 1 pp.-1 pp.
14. V. Chalvidan, J. Chambard, G. Craig, A. Diard, G. Foresti, B. Forre, S. Gentili, P. Hobson, R. Lampitt, P. Maine, J. Malmo, H. Nareid, A. Pescetto, G. Pieroni, S. Serpico, K. Tipping, and A. Trucco, "High-resolution in situ holographic recording and analysis of marine organisms and particles (HOLOMAR)," in OCEANS '98 Conference Proceedings, vol. 3, Jan. 1998, pp. 1599-1603 vol.3-1599-1603 vol.3.
15. P. R. Hobson and J. Watson, "The principles and practice of holographic recording of plankton," J. Opt. A: Pure Appl. Opt., vol. 4, pp. 34-49, 2002.
16. M. Benfield, P. Grosjean, P. Culverhouse, X. Irigoien, M. Sieracki, A. Lopez-Urrutia, H. Dam, Q. Hu, C. Davis, A. Hansen, C. Pilskaln, E. Riseman, H. Schultz, P. Utgoff, and G. Gorsky, "RAPID: Research on Automated Plankton Identification," Oceanography, vol. 20, no. 2, pp. 12-26, June 2007.
17. S. Yeom, I. Moon, and B. Javidi, "Real-time 3-D sensing, visualization and recognition of dynamic biological microorganisms," Proceedings of the IEEE, vol. 94, no. 3, pp. 550- 566-550- 566, Jan. 2006.
18. J. Fessler and S. Sotthivirat, "Simplified digital holographic reconstruction using statistical methods," in Image Processing, 2004. ICIP '04. 2004 International Conference on, vol. 4, Jan. 2004, pp. 2435- 2438 Vol. 4-2435- 2438 Vol. 4.
19. S. Sotthivirat and J. Fessler, "Reconstruction from digital holograms by statistical methods," in Signals, Systems and Computers, 2003. Conference Record of the Thirty-Seventh Asilomar Conference on, vol. 2, Jan. 2003, pp. 1928- 1932 Vol.2-1928- 1932 Vol.2.
20. S. Sotthivirat and J. A. Fessler, "Penalized-likelihood image reconstruction for digital holography," J. Opt. Soc. Am. A, vol. 21, no. 5, pp. 737-750, Jan. 2004.
21. E Soulez, L. Denis, C. Fournier, ric Thibaut, and C. Goepfert, "Inverseproblem approach for particle digital holography: accurate location based on local optimization," J. Opt. Soc. Am. A, vol. 24, no. 4, pp. 1164-1171, Jan. 2007.
22. M. Liebling, T. Blu, E. Cuche, P. Marquet, C. Depeursinge, and M. Unser, "A novel non-diffractive reconstruction method for digital holographic microscopy," in Biomedical Imaging, 2002. Proceedings. 2002 IEEE International Symposium on, Jan. 2002, pp. 625- 628-625-628.
23. W. Li, N. Loomis, Q. Hu, and C. Davis, "Focus detection from digital in-line holograms based on spectral 11 norm," Journal of the Optical Society of America, A., to appear, 2007.
24. J. W. Goodman, Introduction to Fourier Optics. McGraw-Hill, 1968.
25. W. Li, "Computational Reconstruction of Images From Optical Holograms," Master's thesis, Massachusetts Institute of Technology, 2002.
26. E Dubois, C. Schockaert, N. Callens, and C. Yourassowsky, "Focus plane detection criteria in digital holography microscopy by amplitude analysis," Optics Express, vol. 14, pp. 5895-5908, 2006.