메뉴 건너뛰기




Volumn 18, Issue 5, 2008, Pages 815-820

Application of rDNA-PCR amplificafion and DGGE fingerprinting for detection of microbial diversity in a Malaysian crude oil

Author keywords

16S rDNA; 18S rDNA; Crude oil; DGGE; Microbial diversity

Indexed keywords

DNA 16S; DNA 18S; PETROLEUM; RIBOSOME DNA;

EID: 50249125804     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (8)

References (32)
  • 1
    • 33744962980 scopus 로고    scopus 로고
    • Analysis of bacterial diversity and community structure in forest soils contaminated with fuel hydrocarbon
    • Ahn, J. H., M. S. Kim, M. C. Kim, J. S. Lim, G. T. Lee, J. K. Yun, T. Kim, T. Kim, and J. O. Ka. 2006. Analysis of bacterial diversity and community structure in forest soils contaminated with fuel hydrocarbon. J. Microbiol. Biotechnol. 16: 704-715.
    • (2006) J. Microbiol. Biotechnol , vol.16 , pp. 704-715
    • Ahn, J.H.1    Kim, M.S.2    Kim, M.C.3    Lim, J.S.4    Lee, G.T.5    Yun, J.K.6    Kim, T.7    Kim, T.8    Ka, J.O.9
  • 2
    • 4644280496 scopus 로고    scopus 로고
    • Anaerobic hydrocarbon biodegradation in deep subsurface oil reservoirs
    • Aitken, C. M., D. M. Jones, and S. R. Larter. 2004. Anaerobic hydrocarbon biodegradation in deep subsurface oil reservoirs. Nature 431: 291-294.
    • (2004) Nature , vol.431 , pp. 291-294
    • Aitken, C.M.1    Jones, D.M.2    Larter, S.R.3
  • 4
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59: 143-169.
    • (1995) Microbiol. Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 5
    • 0001480888 scopus 로고
    • Hydrocarbon biodegradation and oil-spill remediation
    • Atlas, R. M. and R. Bartha. 1992. Hydrocarbon biodegradation and oil-spill remediation. Adv. Microb. Ecol. 12: 287-338.
    • (1992) Adv. Microb. Ecol , vol.12 , pp. 287-338
    • Atlas, R.M.1    Bartha, R.2
  • 6
    • 51249174563 scopus 로고
    • Response of microbial populations to environmental disturbance
    • Atlas, R. M., A. Horowitz, M. Krichevsky, and A. K. Bej. 1991. Response of microbial populations to environmental disturbance. Microb. Ecol. 22: 249-256.
    • (1991) Microb. Ecol , vol.22 , pp. 249-256
    • Atlas, R.M.1    Horowitz, A.2    Krichevsky, M.3    Bej, A.K.4
  • 8
    • 21644438217 scopus 로고    scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons by soil fungi
    • Clemente, A. R., T. A. Anazawa, and L. R. Durrant. 2001. Biodegradation of polycyclic aromatic hydrocarbons by soil fungi. Brazilian J. Microbiol. 32: 255-261.
    • (2001) Brazilian J. Microbiol , vol.32 , pp. 255-261
    • Clemente, A.R.1    Anazawa, T.A.2    Durrant, L.R.3
  • 9
    • 0033946822 scopus 로고    scopus 로고
    • Hydrocarbon utilization in yeast isolates found to grow in association with petroleum in a polluted ultisol of Midwestern Nigeria
    • Ekundayo, E. O. and C. O. Obuekwe. 2000. Hydrocarbon utilization in yeast isolates found to grow in association with petroleum in a polluted ultisol of Midwestern Nigeria. Environ Monit. Assess. 63: 381-387.
    • (2000) Environ Monit. Assess , vol.63 , pp. 381-387
    • Ekundayo, E.O.1    Obuekwe, C.O.2
  • 10
    • 27944437511 scopus 로고    scopus 로고
    • Microbial diversity: Application of microorganisms for the biodegradation of xenobiotics
    • Jain, R. K., M. Kapur, S. Labana, B. Lal, P. M. Sarma, D. Bhattacharya, and I. S. Thakur. 2005. Microbial diversity: Application of microorganisms for the biodegradation of xenobiotics. Curr. Sci. 89: 101-112.
    • (2005) Curr. Sci , vol.89 , pp. 101-112
    • Jain, R.K.1    Kapur, M.2    Labana, S.3    Lal, B.4    Sarma, P.M.5    Bhattacharya, D.6    Thakur, I.S.7
  • 11
    • 33750368884 scopus 로고    scopus 로고
    • Enrichment, performance, and microbial diversity of a thermophilic mediatorless microbial fuel cell
    • Jong, B. C., B. H. Kim, I. S. Chang, P. W. Y. Liew, Y. F. Choo, and G. S. Kang. 2006. Enrichment, performance, and microbial diversity of a thermophilic mediatorless microbial fuel cell. Environ. Sci. Technol. 40: 6449-6454.
    • (2006) Environ. Sci. Technol , vol.40 , pp. 6449-6454
    • Jong, B.C.1    Kim, B.H.2    Chang, I.S.3    Liew, P.W.Y.4    Choo, Y.F.5    Kang, G.S.6
  • 12
    • 0033884282 scopus 로고    scopus 로고
    • Bioremediation of high molecular weight polycyclic aromatic hydrocarbons: A review of the microbial degradation of benzo [a]pyrene
    • Juhasz, A. L. and R. Naidu. 2000. Bioremediation of high molecular weight polycyclic aromatic hydrocarbons: A review of the microbial degradation of benzo [a]pyrene. Int. Biodeter. Biodegrad. 45: 57-88.
    • (2000) Int. Biodeter. Biodegrad , vol.45 , pp. 57-88
    • Juhasz, A.L.1    Naidu, R.2
  • 13
    • 12544249618 scopus 로고    scopus 로고
    • Bacterial community dynamics during in-situ bioremediation of petroleum waste sludge in landfarming sites
    • Katsivela, E., E. R. B. Moore, D. Maroukli, C. Strömpl, D. Pieper, and N. Kalogerakis. 2005. Bacterial community dynamics during in-situ bioremediation of petroleum waste sludge in landfarming sites. Biodegradation 16: 169-180.
    • (2005) Biodegradation , vol.16 , pp. 169-180
    • Katsivela, E.1    Moore, E.R.B.2    Maroukli, D.3    Strömpl, C.4    Pieper, D.5    Kalogerakis, N.6
  • 14
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitution through comparatis studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitution through comparatis studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
    • (1980) J. Mol. Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 16
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionaiy genetics analysis and sequence alignment
    • Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for molecular evolutionaiy genetics analysis and sequence alignment. Brief. Bioinfor. 5: 150-163.
    • (2004) Brief. Bioinfor , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 17
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. E. Stackebrandt and M. Goodfellow eds, John Wiley & Sons, Chichester
    • Lane, D. J. 1991. 16S/23S rRNA sequencing, pp. 115-175. In E. E. Stackebrandt and M. Goodfellow (eds.), Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons, Chichester.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 18
    • 14744283310 scopus 로고    scopus 로고
    • Ecological study of the fungal populations of the acidic Tinto River in southwestern Spain
    • López-Archilla, A. I., A. E. González, M. C. Terrón, and R. Amils. 2004. Ecological study of the fungal populations of the acidic Tinto River in southwestern Spain. Can. J. Microbiol. 50: 923-934.
    • (2004) Can. J. Microbiol , vol.50 , pp. 923-934
    • López-Archilla, A.I.1    González, A.E.2    Terrón, M.C.3    Amils, R.4
  • 19
    • 0036889682 scopus 로고    scopus 로고
    • Assessment of fungal diversity using terminal restriction fragment (TRF) pattern analysis: Comparison of 18S and ITS ribosomal regions
    • Lord, N. S., C. W. Kaplan, P. Shank, C. L. Kitts, and S. L. Elrod. 2002. Assessment of fungal diversity using terminal restriction fragment (TRF) pattern analysis: Comparison of 18S and ITS ribosomal regions. FEMS Microbiol. Ecol. 42: 327-337.
    • (2002) FEMS Microbiol. Ecol , vol.42 , pp. 327-337
    • Lord, N.S.1    Kaplan, C.W.2    Shank, P.3    Kitts, C.L.4    Elrod, S.L.5
  • 20
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., E. C. de Waal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59: 695-700.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 21
    • 0032905977 scopus 로고    scopus 로고
    • Effect of crude oil and chemical additives on metabolic activity of mixed microbial populations in fresh marsh soils
    • Nyman, J. A. 1999. Effect of crude oil and chemical additives on metabolic activity of mixed microbial populations in fresh marsh soils. Microb. Ecol. 37: 152-162.
    • (1999) Microb. Ecol , vol.37 , pp. 152-162
    • Nyman, J.A.1
  • 22
    • 33751042574 scopus 로고    scopus 로고
    • Characterization of the microbial diversity in a Korean solar saltern by 16S rRNA gene analysis
    • Park, S. J., C. H. Kang, and S. K. Rhee. 2006. Characterization of the microbial diversity in a Korean solar saltern by 16S rRNA gene analysis. J. Microbiol. Biotechnol. 16: 1640-1645.
    • (2006) J. Microbiol. Biotechnol , vol.16 , pp. 1640-1645
    • Park, S.J.1    Kang, C.H.2    Rhee, S.K.3
  • 23
    • 0031967067 scopus 로고    scopus 로고
    • 2-Ketocyclohexanecarboxyl coenzyme A hydrolase, the ring cleavage enzyme required for anaerobic benzoate degradation by Rhodopseudomonas palustris
    • Pelletier, D. A. and C. S. Harwood. 1998. 2-Ketocyclohexanecarboxyl coenzyme A hydrolase, the ring cleavage enzyme required for anaerobic benzoate degradation by Rhodopseudomonas palustris. J. Bacteriol. 180: 2330-2336.
    • (1998) J. Bacteriol , vol.180 , pp. 2330-2336
    • Pelletier, D.A.1    Harwood, C.S.2
  • 24
    • 17144470783 scopus 로고    scopus 로고
    • The microbiology of hydrocarbon degradation in subsurface petroleum reservoirs: Perspectives and prospects
    • Röling, W. F. M., I. M. Head, and S. R. Larter. 2003. The microbiology of hydrocarbon degradation in subsurface petroleum reservoirs: Perspectives and prospects. Res. Microbiol. 154: 321-328.
    • (2003) Res. Microbiol , vol.154 , pp. 321-328
    • Röling, W.F.M.1    Head, I.M.2    Larter, S.R.3
  • 25
    • 33745893787 scopus 로고    scopus 로고
    • Presence of opportunistic oil-degrading microorganisms operating at the initial steps of oil extraction and handling
    • Sánchez, O., I. Ferrera, N. Vigués, T. G. de Oteyza, J. O. Grimalt, and J. Mas. 2006. Presence of opportunistic oil-degrading microorganisms operating at the initial steps of oil extraction and handling. Int. Microbiol. 9: 119-124.
    • (2006) Int. Microbiol , vol.9 , pp. 119-124
    • Sánchez, O.1    Ferrera, I.2    Vigués, N.3    de Oteyza, T.G.4    Grimalt, J.O.5    Mas, J.6
  • 26
    • 0019021371 scopus 로고
    • Anatomy of an oil spill: Long-term effects from the grounding of the barge Florida off West Falmouth, Massachusetts
    • Sanders, H. L., J. F. Grassle, G. R. Hampson, L. S. Morse, S. Garner-Price, and C. C. Jones. 1980. Anatomy of an oil spill: Long-term effects from the grounding of the barge Florida off West Falmouth, Massachusetts. J. Mar. Res. 38: 265-380.
    • (1980) J. Mar. Res , vol.38 , pp. 265-380
    • Sanders, H.L.1    Grassle, J.F.2    Hampson, G.R.3    Morse, L.S.4    Garner-Price, S.5    Jones, C.C.6
  • 27
    • 19544367285 scopus 로고    scopus 로고
    • Hydrocarbon contamination changes the bacterial diversity of soil from around Scott Base, Antartica
    • Saul, D. J., J. M. Aislabie, C. E. Brown, L. Harris, and J. M. Foght. 2005. Hydrocarbon contamination changes the bacterial diversity of soil from around Scott Base, Antartica. FEMS Microbiol. Ecol. 53: 141-155.
    • (2005) FEMS Microbiol. Ecol , vol.53 , pp. 141-155
    • Saul, D.J.1    Aislabie, J.M.2    Brown, C.E.3    Harris, L.4    Foght, J.M.5
  • 28
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic. Acids Res. 22: 4673-4680.
    • (1994) Nucleic. Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 29
    • 0042417135 scopus 로고    scopus 로고
    • Intrinsic aromatic hydrocarbon biodegradation for groundwater remediation
    • Tiehm, A. and S. Schulze. 2003. Intrinsic aromatic hydrocarbon biodegradation for groundwater remediation. Oil Gas Sci. Technol. Rev. IFP 58: 449-462.
    • (2003) Oil Gas Sci. Technol. Rev. IFP , vol.58 , pp. 449-462
    • Tiehm, A.1    Schulze, S.2
  • 30
    • 0033506585 scopus 로고    scopus 로고
    • Cometabolic oxidation of phenanthrene to phenanthrene trans-9, 10-dihydrodiol by Mycobacterium strain S1 growing on anthracene in the presence of phenanthrene
    • Tongpim, S. and M. A. Pickard. 1999. Cometabolic oxidation of phenanthrene to phenanthrene trans-9, 10-dihydrodiol by Mycobacterium strain S1 growing on anthracene in the presence of phenanthrene. Can. J. Microbiol. 45: 369-376.
    • (1999) Can. J. Microbiol , vol.45 , pp. 369-376
    • Tongpim, S.1    Pickard, M.A.2
  • 31
    • 33846384691 scopus 로고    scopus 로고
    • Co-variations of bacterial composition and catabolic genes related to PAH degradation in a produced water treatment system consisting of successive anoxic and aerobic units
    • Wang, Z., J. Li, A. F. L. Hesham, S. He, Y. Zhang, Z. Wang, and M. Yang. 2007. Co-variations of bacterial composition and catabolic genes related to PAH degradation in a produced water treatment system consisting of successive anoxic and aerobic units. Sci. Total Environ. 373: 356-362.
    • (2007) Sci. Total Environ , vol.373 , pp. 356-362
    • Wang, Z.1    Li, J.2    Hesham, A.F.L.3    He, S.4    Zhang, Y.5    Wang, Z.6    Yang, M.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.