메뉴 건너뛰기




Volumn 4921 LNCS, Issue , 2008, Pages 34-45

On the approximability of comparing genomes with duplicates

Author keywords

Adjacencies; APX Hardness; Breakpoints; Common intervals; Conserved intervals; Duplicates; Genome rearrangement

Indexed keywords

IMAGE RETRIEVAL; IMAGE SEGMENTATION; KETONES;

EID: 50049128860     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-77891-2_4     Document Type: Conference Paper
Times cited : (12)

References (17)
  • 1
    • 0001657065 scopus 로고    scopus 로고
    • Some APX-completeness results for cubic graphs
    • Alimonti, P., Kann, V.: Some APX-completeness results for cubic graphs. Theoretical Computer Science 237(1-2), 123-134 (2000)
    • (2000) Theoretical Computer Science , vol.237 , Issue.1-2 , pp. 123-134
    • Alimonti, P.1    Kann, V.2
  • 2
    • 34250375663 scopus 로고    scopus 로고
    • A general framework for computing rearrangement distances between genomes with duplicates
    • Angibaud, S., Fertin, G., Rusu, I., Vialette, S.: A general framework for computing rearrangement distances between genomes with duplicates. Journal of Computational Biology 14(4), 379-393 (2007)
    • (2007) Journal of Computational Biology , vol.14 , Issue.4 , pp. 379-393
    • Angibaud, S.1    Fertin, G.2    Rusu, I.3    Vialette, S.4
  • 3
    • 0028899657 scopus 로고
    • Sorting by reversals: Genome rearrangements in plant organelles and evolutionary history of X chromosome
    • Bafna, V., Pevzner, P.: Sorting by reversals: genome rearrangements in plant organelles and evolutionary history of X chromosome. Molecular Biology and Evolution, 239-246 (1995)
    • (1995) Molecular Biology and Evolution , vol.239-246
    • Bafna, V.1    Pevzner, P.2
  • 4
    • 26844563692 scopus 로고    scopus 로고
    • Conserved interval distance computation between non-trivial genomes
    • Wang, L, ed, COCOON 2005, Springer, Heidelberg
    • Blin, G., Rizzi, R.: Conserved interval distance computation between non-trivial genomes. In: Wang, L. (ed.) COCOON 2005. LNCS, vol. 3595, pp. 22-31. Springer, Heidelberg (2005)
    • (2005) LNCS , vol.3595 , pp. 22-31
    • Blin, G.1    Rizzi, R.2
  • 6
    • 33746598990 scopus 로고    scopus 로고
    • Genomes containing duplicates are hard to compare
    • Alexandrov, V.N, van Albada, G.D, Sloot, P.M.A, Dongarra, J.J, eds, ICCS, Springer, Heidelberg
    • Chauve, C., Fertin, G., Rizzi, R., Vialette, S.: Genomes containing duplicates are hard to compare. In: Alexandrov, V.N., van Albada, G.D., Sloot, P.M.A., Dongarra, J.J. (eds.) ICCS 2006. LNCS, vol. 3992, pp. 783-790. Springer, Heidelberg (2006)
    • (2006) LNCS , vol.3992 , pp. 783-790
    • Chauve, C.1    Fertin, G.2    Rizzi, R.3    Vialette, S.4
  • 7
    • 37749034336 scopus 로고    scopus 로고
    • Non-breaking similarity of genomes with gene repetitions
    • CPM, Springer, Heidelberg
    • Chen, Z., Fu, B., Xu, J., Yang, B., Zhao, Z., Zhu, B.: Non-breaking similarity of genomes with gene repetitions. In: CPM 2007. LNCS, vol. 4580, pp. 119-130. Springer, Heidelberg (2007)
    • (2007) LNCS , vol.4580 , pp. 119-130
    • Chen, Z.1    Fu, B.2    Xu, J.3    Yang, B.4    Zhao, Z.5    Zhu, B.6
  • 8
    • 33746238850 scopus 로고    scopus 로고
    • Chen, Z., Fu, B., Zhu, B.: The approximability of the exemplar breakpoint distance problem. In: Cheng, S.-W., Poon, C.K. (eds.) AAIM 2006. LNCS, 4041, pp. 291-302. Springer, Heidelberg (2006)
    • Chen, Z., Fu, B., Zhu, B.: The approximability of the exemplar breakpoint distance problem. In: Cheng, S.-W., Poon, C.K. (eds.) AAIM 2006. LNCS, vol. 4041, pp. 291-302. Springer, Heidelberg (2006)
  • 9
    • 27144471879 scopus 로고    scopus 로고
    • Crochemore, M., Hermelin, D., Landau, G.M., Vialette, S.: Approximating the 2interval pattern problem. In: Brodal, G.S., Leonardi, S. (eds.) ESA 2005. LNCS, 3669, pp. 426-437. Springer, Heidelberg (2005)
    • Crochemore, M., Hermelin, D., Landau, G.M., Vialette, S.: Approximating the 2interval pattern problem. In: Brodal, G.S., Leonardi, S. (eds.) ESA 2005. LNCS, vol. 3669, pp. 426-437. Springer, Heidelberg (2005)
  • 10
    • 25844508722 scopus 로고    scopus 로고
    • Goldstein, A., Kolman, P., Zheng, Z.: Minimum common string partition problem: Hardness and approximations. In: Fleischer, R., Trippen, G. (eds.) ISAAC 2004. LNCS, 3341, pp. 473-484. Springer, Heidelberg (2004)
    • Goldstein, A., Kolman, P., Zheng, Z.: Minimum common string partition problem: Hardness and approximations. In: Fleischer, R., Trippen, G. (eds.) ISAAC 2004. LNCS, vol. 3341, pp. 473-484. Springer, Heidelberg (2004)
  • 11
    • 38149094111 scopus 로고    scopus 로고
    • Kolman, P., Waleń, T.: Reversal distance for strings with duplicates: Linear time approximation using hitting set. In: Erlebach, T., Kaklamanis, C (eds.) WAOA 2006. LNCS, 4368, pp. 279-289. Springer, Heidelberg (2007)
    • Kolman, P., Waleń, T.: Reversal distance for strings with duplicates: Linear time approximation using hitting set. In: Erlebach, T., Kaklamanis, C (eds.) WAOA 2006. LNCS, vol. 4368, pp. 279-289. Springer, Heidelberg (2007)
  • 12
    • 0035865239 scopus 로고    scopus 로고
    • Evolutionary analysis of the human genome
    • Li, W., Gu, Z., Wang, H., Nekrutenko, A.: Evolutionary analysis of the human genome. Nature (409), 847-849 (2001)
    • (2001) Nature , vol.409 , pp. 847-849
    • Li, W.1    Gu, Z.2    Wang, H.3    Nekrutenko, A.4
  • 15
    • 0033391532 scopus 로고    scopus 로고
    • Genome rearrangement with gene families
    • Sankoff, D.: Genome rearrangement with gene families. Bioinformatics 15(11), 909-917 (1999)
    • (1999) Bioinformatics , vol.15 , Issue.11 , pp. 909-917
    • Sankoff, D.1
  • 16
    • 33646140925 scopus 로고    scopus 로고
    • Sankoff, D., Haque, L.: Power boosts for cluster tests. In: McLysaght, A., Huson, D.H. (eds.) RECOMB 2005. LNCS (LNBI), 3678, pp. 121-130. Springer, Heidelberg (2005)
    • Sankoff, D., Haque, L.: Power boosts for cluster tests. In: McLysaght, A., Huson, D.H. (eds.) RECOMB 2005. LNCS (LNBI), vol. 3678, pp. 121-130. Springer, Heidelberg (2005)
  • 17
    • 35248841995 scopus 로고    scopus 로고
    • Tang, J., Moret, B.M.E.: Phylogenetic reconstruction from gene-rearrangement data with unequal gene content. In: Dehne, F., Sack, J.-R., Smid, M. (eds.) WADS 2003. LNCS, 2748, pp. 37-46. Springer, Heidelberg (2003)
    • Tang, J., Moret, B.M.E.: Phylogenetic reconstruction from gene-rearrangement data with unequal gene content. In: Dehne, F., Sack, J.-R., Smid, M. (eds.) WADS 2003. LNCS, vol. 2748, pp. 37-46. Springer, Heidelberg (2003)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.