Phylogenetic analysis of human coronavirus NL63 circulating in Italy

Journal of Clinical Virology

Volumn 43, Issue 1, 2008, Pages 114-119

  Minosse, C ^a   Selleri, M ^a   Zaniratti, M S ^a   Cappiello, G ^b   Spano A ^b   Schifano, E ^a   Lauria, F N ^a   Gualano, G ^a   Puro, V ^a   Campanini, G ^c   Gerna, G ^c   Capobianchi, M R ^a  

^a NATIONAL INSTITUTE FOR INFECTIOUS DISEASES L SPALLANZANI   (Italy)

^b SANDRO PERTINI HOSPITAL   (Italy)

^c FONDAZIONE IRCCS POLICLINICO SAN MATTEO   (Italy)

Author keywords

HCoV NL63; Human coronaviruses; Lower respiratory tract infection; Phylogenetic analysis

Indexed keywords

ADULT; AGED; ARTICLE; CLINICAL EVALUATION; CONTROLLED STUDY; CORONAVIRUS; FEMALE; GENE CLUSTER; HOSPITALIZATION; HUMAN; ITALY; LOWER RESPIRATORY TRACT; MAJOR CLINICAL STUDY; MALE; NUCLEOTIDE SEQUENCE; PHYLOGENY; PREVALENCE; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RESPIRATORY TRACT DISEASE; VIRUS STRAIN;

ADOLESCENT; ADULT; AGED; AGED, 80 AND OVER; CORONAVIRUS; CORONAVIRUS INFECTIONS; FEMALE; GENES, VIRAL; HUMANS; ITALY; MALE; MIDDLE AGED; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

EID: 49749141443     PISSN: 13866532     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jcv.2008.04.015     Document Type: Article

References (29)

1. Arden K.E., Nissen M.D., Sloots T.P., and Mackay I.M. New human coronavirus, HCoV-NL63, associated with severe lower respiratory tract disease in Australia. J Med Virol 75 March (3) (2005) 455-462
2. Bastien N., Anderson K., Hart L., Van Caeseele P., Brandt K., Milley D., et al. Human coronavirus NL63 infection in Canada. J Infect Dis 191 February 15 (4) (2005) 503-506 [Epub 2005 January 4]
3. Bastien N., Robinson J.L., Tse A., Lee B.E., Hart L., and Li Y. Human coronavirus NL-63 infections in children: a 1-year study. J Clin Microbiol 43 September (9) (2005) 4567-4573
4. Boivin G., Baz M., Côté S., Gilca R., Deffrasnes C., Leblanc E., et al. Infections by human coronavirus-NL in hospitalized children. Pediatr Infect Dis J 24 December (12) (2005) 1045-1048
5. Chiu S.S., Chan K.H., Chu K.W., Kwan S.W., Guan Y., Poon L.L., et al. Human coronavirus NL63 infection and other coronavirus infections in children hospitalized with acute respiratory disease in Hong Kong, China. Clin Infect Dis 40 January 15 (12) (2005) 1721-1729 [Epub 2005 May 10]
6. Ebihara T., Endo R., Ma X., Ishiguro N., and Kikuta H. Detection of human coronavirus NL63 in young children with bronchiolitis. J Med Virol 75 March (3) (2005) 463-465
7. Fauquet CM, editor. Virus taxonomy VIIIth report of the International Committee on taxonomy of viruses.
8. Fouchier R.A., Hartwig N.G., Bestebroer T.M., Niemeyer B., de Jong J.C., Simon J.H., and Osterhaus A.D. A previously undescribed coronavirus associated with respiratory disease in humans. Proc Natl Acad Sci USA 101 April 20 (16) (2004) 6212-6216 [Epub 2004 April 8]
9. Gagneur A., Sizun J., Vallet S., Legr M.C., Picard B., and Talbot P.J. Coronavirus-related nosocomial viral respiratory infections in a neonatal and paediatric intensive care unit: a prospective study. J Hosp Infect 51 May (1) (2002) 59-64
10. Garbino J., Crespo S., Aubert J.D., Rochat T., Ninet B., Deffernez C., et al. A prospective hospital-based study of the clinical impact of non-severe acute respiratory syndrome (Non-SARS)-related human coronavirus infection. Clin Infect Dis 43 October 15 (8) (2006) 1009-1015 [Epub 2006 September 13]
11. Gerna G., Campanini G., Rovida F., Percivalle E., Sarasini A., Marchi A., et al. Genetic variability of human coronavirus OC43-, 229E-, and NL63-like strains and their association with lower respiratory tract infections of hospitalized infants and immunocompromised patients. J Med Virol 78 July (7) (2006) 938-949
12. Han T.H., Chung J.Y., Kim S.W., and Hwang E.S. Human Coronavirus-NL63 infections in Korean children, 2004-2006. J Clin Virol 38 January (1) (2007) 27-31 [Epub 2006 November 29]
13. Kaiser L., Regamey N., Roiha H., Deffernez C., and Frey U. Human coronavirus NL63 associated with lower respiratory tract symptoms in early life. Pediatr Infect Dis J 24 November (11) (2005) 1015-1017
14. Koetz A., Nilsson P., Lindén M., van der Hoek L., and Ripa T. Detection of human coronavirus NL63, human metapneumovirus and respiratory syncytial virus in children with respiratory tract infections in south-west Sweden. Clin Microbiol Infect 12 November (11) (2006) 1089-1096
15. Kuypers J., Martin E.T., Heugel J., Wright N., Morrow R., and Englund J.A. Clinical disease in children associated with newly described coronavirus subtypes. Pediatrics 119 January (1) (2007) e70-e76 [Epub 2006 November 27]
16. Mäkelä M.J., Puhakka T., Ruuskanen O., Leinonen M., Saikku P., Kimpimäki M., et al. Viruses and bacteria in the etiology of the common cold. J Clin Microbiol 36 February (2) (1998) 539-542
17. Minosse C., Selleri M., Zaniratti M.S., Cappiello G., Longo R., Schifano E., et al. Frequency of detection of respiratory viruses in the lower respiratory tract of hospitalized adults. J Clin Virol March 13 (2008) [Epub ahead of print]
18. Moës E., Vijgen L., Keyaerts E., Zlateva K., Li S., Maes P., et al. A novel pancoronavirus RT-PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium. BMC Infect Dis 5 February (1) 1 (2005) 6
19. Peiris J.S., et al. Coronavirus as a possible cause of severe acute respiratory syndrome. Lancet 361 April 19 (9366) (2003) 1319-1325
20. Pene F., Merlat A., Vabret A., Rozenberg F., Buzyn A., Dreyfus F., et al. Coronavirus 229E-related pneumonia in immunocompromised patients. Clin Infect Dis 37 October 1 (7) (2003) 929-932 [Epub 2003 September 8]
21. Pyrc K., Berkhout B., and van der Hoek L. The novel human coronaviruses NL63 and HKU1. J Virol 81 April (7) (2007) 3051-3057 [Epub 2006 November 1]
22. Suzuki A., Okamoto M., Ohmi A., Watanabe O., Miyabayashi S., and Nishimura H. Detection of human coronavirus-NL63 in children in Japan. Pediatr Infect Dis J 24 July (7) (2005) 645-646
23. Vabret A., Mouthon F., Mourez T., Gouarin S., Petitjean J., and Freymuth F. Direct diagnosis of human respiratory coronaviruses 229E and OC43 by the polymerase chain reaction. J Virol Methods 97 September (1-2) (2001) 59-66
24. Vabret A., Mourez T., Dina J., van der Hoek L., Gouarin S., Petitjean J., et al. Human coronavirus NL63, France. Emerg Infect Dis 11 August (8) (2005) 1225-1229
25. van der Hoek L., Pyrc K., Jebbink M.F., Vermeulen-Oost W., Berkhout R.J., Wolthers K.C., et al. Identification of a new human coronavirus. Nat Med 10 April (4) (2004) 368-373 [Epub 2004 March 21]
26. van der Hoek L., Sure K., Ihorst G., Stang A., Pyrc K., Jebbink M.F., et al. Croup is associated with the novel coronavirus NL63. PLoS Med 2 August (8) (2005) e240 [Epub 2005 August 23]
27. van der Hoek L., Pyrc K., and Berkhout B. Human coronavirus NL63, a new respiratory virus. FEMS Microbiol Rev 30 September (5) (2006) 760-773
28. Woo P.C., Lau S.K., Chu C.M., Chan K.H., Tsoi H.W., Huang Y., et al. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J Virol 79 January (2) (2005) 884-895
29. Wu P.S., Chang L.Y., Berkhout B., van der Hoek L., Lu C.Y., Kao C.L., et al. Clinical manifestations of human coronavirus NL63 infection in children in Taiwan. Eur J Pediatr 167 January (1) (2008) 75-80 [Epub 2007 February 13]