Identification of a novel Vamp1 splice variant in the cochlear nucleus

Hearing Research

Volumn 243, Issue 1-2, 2008, Pages 105-112

  Friedland, David R ^a   Eernisse, Rebecca ^a   Popper, Paul ^a  

^a MEDICAL COLLEGE OF WISCONSIN   (United States)

Author keywords

Auditory; Cochlear nucleus; Splice variant; Synaptic vesicle; Vamp1

Indexed keywords

PHOSPHOTRANSFERASE; SNARE PROTEIN; SYNAPTOBREVIN 1;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ACOUSTIC NERVE FIBER; ANIMAL TISSUE; ARTICLE; BRAIN CORTEX; CARBOXY TERMINAL SEQUENCE; CEREBELLUM; COCHLEAR NUCLEUS; CONTROLLED STUDY; DNA LIBRARY; ENZYME PHOSPHORYLATION; FEMALE; GENE AMPLIFICATION; GENE EXPRESSION; MEDULLA OBLONGATA; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN VARIANT; RAT; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; THALAMUS; TISSUE DISTRIBUTION;

ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; COCHLEAR NUCLEUS; DNA PRIMERS; FEMALE; GENE EXPRESSION; HUMANS; MOLECULAR SEQUENCE DATA; PROTEIN ISOFORMS; RATS; RATS, INBRED BN; RNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TISSUE DISTRIBUTION; VESICLE-ASSOCIATED MEMBRANE PROTEIN 1;

EID: 49749109087     PISSN: 03785955     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.heares.2008.06.009     Document Type: Article

References (28)

1. Abril J.F., Castelo R., and Guigo R. Comparison of splice sites in mammals and chicken. Genome Res. 15 (2005) 111-119
2. Berglund L., Hoffmann H.J., Dahl R., and Petersen T.E. VAMP-1 has a highly variable C-terminus generated by alternative splicing. Biochem. Biophys. Res. Commun. 264 (1999) 777-780
3. Blackburn C.C., and Sachs M.B. Classification of unit types in the anteroventral cochlear nucleus: PST histograms and regularity analysis. J. Neurophysiol. 62 (1989) 1303-1329
4. Bowen M., and Brunger A.T. Conformation of the synaptobrevin transmembrane domain. Proc. Natl. Acad. Sci. USA 103 (2006) 8378-8383
5. Cant N.B., and Benson C.G. Parallel auditory pathways: projection patterns of the different neuronal populations in the dorsal and ventral cochlear nuclei. Brain Res. Bull. 60 (2003) 457-474
6. Elferink L.A., Trimble W.S., and Scheller R.H. Two vesicle-associated membrane protein genes are differentially expressed in the rat central nervous system. J. Biol. Chem. 264 (1989) 11061-11064
7. Friedland D.R., Popper P., Eernisse R., and Cioffi J.A. Differentially expressed genes in the rat cochlear nucleus. Neuroscience 142 (2006) 753-768
8. Friedland D.R., Eernisse R., and Popper P. Potassium channel gene expression in the rat cochlear nucleus. Hear. Res. 228 (2007) 31-43
9. Isenmann S., Khew-Goodall Y., Gamble J., Vadas M., and Wattenberg B.W. A splice-isoform of vesicle-associated membrane protein-1 (VAMP-1) contains a mitochondrial targeting signal. Mol. Biol. Cell 9 (1998) 1649-1660
10. Jacobsson G., Piehl F., and Meister B. VAMP-1 and VAMP-2 gene expression in rat spinal motoneurones: differential regulation after neuronal injury. Eur. J. Neurosci. 10 (1998) 301-316
11. Li J.Y., Edelmann L., Jahn R., and Dahlstrom A. Axonal transport and distribution of synaptobrevin I and II in the rat peripheral nervous system. J. Neurosci. 16 (1996) 137-147
12. Mandic R., Trimble W.S., and Lowe A.W. Tissue-specific alternative RNA splicing of rat vesicle-associated membrane protein-1 (VAMP-1). Gene 199 (1997) 173-179
13. Marchiori F., Meggio F., Marin O., Borin G., Calderan A., Ruzza P., and Pinna L.A. Synthetic peptide substrates for casein kinase 2. Assessment of minimum structural requirements for phosphorylation. Biochim. Biophys. Acta 971 (1988) 332-338
14. Nielander H.B., Onofri F., Valtorta F., Schiavo G., Montecucco C., Greengard P., and Benfenati F. Phosphorylation of VAMP/synaptobrevin in synaptic vesicles by endogenous protein kinases. J. Neurochem. 65 (1995) 1712-1720
15. Oleskevich S., Youssoufian M., and Walmsley B. Presynaptic plasticity at two giant auditory synapses in normal and deaf mice. J. Physiol. 560 (2004) 709-719
16. Pyle R.A., Schivell A.E., Hidaka H., and Bajjalieh S.M. Phosphorylation of synaptic vesicle protein 2 modulates binding to synaptotagmin. J. Biol. Chem. 275 (2000) 17195-17200
17. Raptis A., Torrejon-Escribano B., Gomez de Aranda I., and Blasi J. Distribution of synaptobrevin/VAMP 1 and 2 in rat brain. J. Chem. Neuroanat. 30 (2005) 201-211
18. Rhode W.S., and Smith P.H. Encoding timing and intensity in the ventral cochlear nucleus of the cat. J. Neurophysiol. 56 (1986) 261-286
19. Risinger C., and Bennett M.K. Differential phosphorylation of syntaxin and synaptosome-associated protein of 25 kDa (SNAP-25) isoforms. J. Neurochem. 72 (1999) 614-624
20. Rossetto O., Gorza L., Schiavo G., Schiavo N., Scheller R.H., and Montecucco C. VAMP/synaptobrevin isoforms 1 and 2 are widely and differentially expressed in nonneuronal tissues. J. Cell Biol. 132 (1996) 167-179
21. Sakaba T., Stein A., Jahn R., and Neher E. Distinct kinetic changes in neurotransmitter release after SNARE protein cleavage. Science 309 (2005) 491-494
22. Schoch S., Deak F., Konigstorfer A., Mozhayeva M., Sara Y., Sudhof T.C., and Kavalali E.T. SNARE function analyzed in synaptobrevin/VAMP knockout mice. Science 294 (2001) 1117-1122
23. Siddiqui T.J., Vites O., Stein A., Heintzmann R., Jahn R., and Fasshauer D. Determinants of synaptobrevin regulation in membranes. Mol. Biol. Cell 18 (2007) 2037-2046
24. Snyder D.A., Kelly M.L., and Woodbury D.J. SNARE complex regulation by phosphorylation. Cell Biochem. Biophys. 45 (2006) 111-123
25. Stabler S.E., Palmer A.R., and Winter I.M. Temporal and mean rate discharge patterns of single units in the dorsal cochlear nucleus of the anesthetized guinea pig. J. Neurophysiol. 76 (1996) 1667-1688
26. Sudhof T.C. The synaptic vesicle cycle. Annu. Rev. Neurosci. 27 (2004) 509-547
27. Thiagarajan T.C., Piedras-Renteria E.S., and Tsien R.W. alpha- and betaCaMKII. Inverse regulation by neuronal activity and opposing effects on synaptic strength. Neuron 36 (2002) 1103-1114
28. Trimble W.S., Gray T.S., Elferink L.A., Wilson M.C., and Scheller R.H. Distinct patterns of expression of two VAMP genes within the rat brain. J. Neurosci. 10 (1990) 1380-1387