Characterization of highly purified photosystem I complexes from the chlorophyll d-dominated cyanobacterium Acaryochloris marina MBIC 11017

Journal of Biological Chemistry

Volumn 283, Issue 26, 2008, Pages 18198-18209

  Tomo, Tatsuya ^a   Kato, Yuki ^b   Suzuki, Takehiro ^c   Akimoto, Seiji ^d   Okubo, Tatsunori ^e   Noguchi, Takumi ^e   Hasegawa, Koji ^f   Tsuchiya, Tohru ^a   Tanaka, Kazunori ^d   Fukuya, Michitaka ^d   Dohmae, Naoshi ^c   Watanabe, Tadashi ^b   Mimuro, Mamoru ^a  

^a KYOTO UNIVERSITY   (Japan)

^b INSTITUTE OF INDUSTRIAL SCIENCE   (Japan)

^c RIKEN   (Japan)

^d KOBE UNIVERSITY   (Japan)

^e UNIVERSITY OF TSUKUBA   (Japan)

^f ADVANCESOFT CORPORATION   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPHYLL; DENSITY FUNCTIONAL THEORY; FOURIER TRANSFORMS; INFRARED SPECTROSCOPY; KETONES; MARINAS; OPTICAL PROPERTIES; PORPHYRINS; PURIFICATION; SPECTROELECTROCHEMISTRY;

A DENSITIES; CYANOBACTERIUM; ELECTRON ACCEPTORS; FOURIER TRANSFORM INFRARED DIFFERENCE SPECTROSCOPIES; HIGHER PLANTS; I COMPLEXES; LIGHT ENERGIES; PARTIAL LOCALIZATIONS; PHOTOSYSTEM; PHYLLOQUINONE; PRIMARY ELECTRON DONORS; PROTEIN MATRIXES; REDOX POTENTIALS; SMALL SUBUNITS;

ABSORPTION SPECTROSCOPY;

ALPHA CAROTENE; CHLOROPHYLL; CHLOROPHYLL D; PHYTOMENADIONE; PROTEIN SUBUNIT; PROTEIN SUBUNIT PSA27; PROTEIN SUBUNIT PSAK1; PROTEIN SUBUNIT PSAK2; UNCLASSIFIED DRUG;

ACARYOCHLORIS MARINA MBIC 11017; ARTICLE; COMPLEX FORMATION; CYANOBACTERIUM; DENSITY FUNCTIONAL THEORY; ELECTROCHEMISTRY; ELECTRON TRANSPORT; INFRARED SPECTROSCOPY; NONHUMAN; OXIDATION REDUCTION REACTION; PHOTOSYSTEM I; PRIORITY JOURNAL; PROTEIN PURIFICATION; AMINO ACID SEQUENCE; BIOLOGICAL MODEL; CHEMICAL STRUCTURE; DIMERIZATION; ELECTRON; LIGHT; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; PHOTOSYNTHESIS; PROTEIN TERTIARY STRUCTURE; SPECTROPHOTOMETRY;

ACARYOCHLORIS MARINA MBIC11017; CYANOBACTERIA; EMBRYOPHYTA;

AMINO ACID SEQUENCE; CHLOROPHYLL; CYANOBACTERIA; DIMERIZATION; ELECTRONS; LIGHT; MODELS, BIOLOGICAL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PHOTOSYNTHESIS; PHOTOSYSTEM I PROTEIN COMPLEX; PROTEIN STRUCTURE, TERTIARY; SPECTROPHOTOMETRY; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 49649125678     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M801805200     Document Type: Article

References (78)

1. Chitnis, P. R., Xu, Q., Chitnis, V. P., and Nechushtai, R. (1995) Photosynth. Res. 44, 23-40
2. Fromme, P., Jordan, P., and Krauss, N. (2001) Biochim. Biophys. Acta 1507, 5-31
3. Brettel, K., and Leibl, W. (2001) Biochim. Biophys. Acta 1507, 100-114
4. Jordan, P., Fromme, P., Witt, H. T., Klukas, O., Saenger, W., and Krauss, N. (2001) Nature 411, 909-917
5. Golbeck, J. H. (1992) Annu. Rev. Plant Physiol. Plant Mol. Biol. 43, 293-324
6. Ramesh, V. M., Gibasiewicz, K., Lin, S., Bingham, S. E., and Webber, A. N. (2007) Biochim. Biophys. Acta 1767, 151-160
7. Muhiuddin, I. P., Heathcote, P., Carter, S., Purton, S., Rigby, S. E. J., and Evans, M. C. W. (2001) FEBS Lett. 503, 56-61
8. Cohen, R. O., Shen, G., Golbeck, J. H., Xu, W., Chitnis, P. R., Valieva, A. I., van der Est, A., Pushkar, Y., and Stehlik, D. (2004) Biochemistry 43, 4741-4754
9. Guergova-Kuras, M., Boudreaux, B., Joliot, A., Joliot, P., and Redding, K. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 4437-4442
10. Holzwarth, A. R., Müller, M. G., Niklas, J., and Lubitz, W. (2006) Biophys. J. 90, 552-565
11. Miyashita, H., Ikemoto, H., Kurano, N., Adachi, K., Chihara, M., and Miyachi, S. (1996) Nature 383, 402
12. Murakami, A., Miyashita, H., Iseki, M., Adachi, K., and Mimuro, M. (2004) Science 303, 1633
13. Miller, S. R., Augustine, S., Olson, T. L., Blankenship, R. E., Selker, J., and Wood, A. M. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 850-855
14. Kühl, M., Chen, M., Ralph, P. J., Schreiber, U., and Larkum, A. W. D. (2005) Nature 433, 820
15. Swingley, W. D., Chen, M., Cheung, P. C., Conrad, A. L., Dejesa, L. C., Hao, J., Honchak, B. M., Karbach, L. E., Kurdoglu, A., Lahiri, S., Mastrian, S. D., Miyashita, H., Page, L., Ramakrishna, P., Satoh, S., Sattley, W. M., Shimada, Y., Taylor, H. L., Tomo, T., Tsuchiya, T., Wang, Z. T., Raymond, J., Mimuro, M., Blankenship, R. E., and Touchman, J. W. (2008) Proc. Natl. Acad. Sci. U. S. A. 105, 2005-2010
16. Mimuro, M., Akimoto, S., Gotoh, T., Yokono, M., Akiyama, M., Tsuchiya, T., Miyashita, H., Kobayashi, M., and Yamazaki, I. (2004) FEBS Lett. 556, 95-98
17. Manning, W. M., and Strain, H. H. (1943) J. Biol. Chem. 151, 1-19
18. Tomo, T., Suzuki, T., Hirano, E., Tsuchiya, T., Miyashita, H., Dohmae, N., and Mimuro, M. (2006) Chem. Phys. Lett. 423, 282-287
19. Miyachi, S., Strassdat, K., Miyashita, H., and Senger, H. (1997) Z. Naturforsch. C Biosci. 52, 636-638
20. Hu, Q., Miyashita, H., Iwasaki, I., Kurano, N., Miyachi, S., Iwaki, M., and Itoh, S. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 13319-13323
21. Sivakumar, V., Wang, R., and Hastings, G. (2003) Biophys. J. 85, 3162-3172
22. Nakamura, A., Suzawa, T., Kato, Y., and Watanabe, T. (2005) FEBS Lett. 579, 2273-2276
23. Kato, Y., Nakamura, A., Suzawa, T., and Watanabe, T. (2008) in Photosynthesis Energy from the Sun (Allen, J., Gantt, E., Golbeck, J., and Osmond, B., eds) Springer-Verlag Inc., New York, in press
24. Ke, B. (2002) Photosynthesis Photobiochemistry and Photobiophysics, pp. 463-478, Kluwer Academic Publishers, Dordrecht, The Netherlands
25. Benjamin, B., Finazzi, G., Benson, S., Barber, J., Rappaport, F., and Telfer, A. (2007) Photosynth. Res. 91, 155
26. Telfer, A., Pascal, A., Barber, J., Schenderlein, M., Schlodder, E., and Cetin, M. (2007) Photosynth. Res. 91, 143
27. Miyashita, H., Adachi, K., Kurano, N., Ikemoto, H., Chihara, M., and Miyachi, S. (1997) Plant Cell Physiol. 38, 274-281
28. Tomo, T., Okubo, T., Akimoto, S., Yokono, M., Miyashita, H., Tsuchiya, T., Noguchi, T., and Mimuro, M. (2007) Proc. Natl. Acad. Sci. U. S. A. 104, 7283-7288
29. Kumazaki, S., Abiko, K., Ikegami, I., Iwaki, M., and Itoh, S. (2002) FEBS Lett. 530, 153-157
30. Ikeuchi, M., and Inoue, Y. (1988) Plant Cell Physiol. 29, 1233-1239
31. Ikeuchi, M., and Inoue, Y. (1988) FEBS Lett. 241, 99-104
32. Akiyama, M., Miyashita, H., Kise, H., Watanabe, T., Miyachi, S., and Kobayashi, M. (2001) Anal. Sci. 17, 205-208
33. Tomo, T., Hirano, E., Nagata, J., and Nakazato, K. (2005) Photosynth. Res. 84, 77-83
34. Watanabe, T., Hongu, A., and Honda, K. (1984) Anal. Chem. 56, 251-256
35. French, C. S. (1960) in Handbuch der Pflanzenphysiologie (Pirson, A., ed) Vol. 5, pp. 252-272, Springer-Verlag, Heidelberg, Germany
36. Britton, G. (1995) in Carotenoids (Britton, G., Liaaen-Jensen, S., and Pfander, H., eds) Vol. 1B, pp. 13-62, Birkhauser Verlag, Basel
37. Patzlaff, J. S., and Barry, B. A. (1996) Biochemistry 35, 7802-7811
38. Mimuro, M., Akimoto, S., Yamazaki, I., Miyashita, H., and Miyachi, S. (1999) Biochim. Biophys. Acta 1412, 37-46
39. Savitzky, A., and Golay, M. J. E. (1964) Anal. Chem. 36, 1627-1639
40. Sun, J., Ke, A., Jin, P., Chitnis, V. P., and Chitnis, P. R. (1998) Methods Enzymol. 297, 124-139
41. Okubo, T., Tomo, T., Sugiura, M., and Noguchi, T. (2007) Biochemistry 46, 4390-4397
42. Nakamura, A., Suzawa, T., and Watanabe, T. (2004) Chem. Lett. 33, 688-689
43. Nakamura, A., Akai, M., Yoshida, E., Taki, T., and Watanabe, T. (2003) Eur. J. Biochem. 270, 2446-2458
44. Akimoto, S., Yokono, M., Ohmae, M., Yamazaki, I., Nagata, N., Tanaka, R., Tanaka, A., and Mimuro, M. (2005) Chem. Phys. Lett. 409, 167-171
45. O'Connor, D. V., and Phillips, D. (1984) Time-correlated Single Photon Counting, Academic Press, London
46. Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., Montgomery, J. A., Jr., Vreven, T., Kudin, K. N., Burant, J. C., Millam, J. M., Iyengar, S. S., Tomasi, J., Barone, V., Mennucci, B., Cossi, M., Scalmani, G., Rega, N., Petersson, G. A., Nakatsuji, H., Hada, M., Ehara, M., Toyota, K., Fukuda, R., Hasegawa, J., Ishida, M., Nakajima, T., Honda, Y., Kitao, O., Nakai, H., Klene, M., Li, X., Knox, J. E., Hratchian, H. P., Cross, J. B., Bakken, V., Adamo, C., Jaramillo, J., Gomperts, R., Stratmann, R. E., Yazyev, O., Austin, A. J., Cammi, R., Pomelli, C., Ochterski, J. W., Ayala, P. Y., Morokuma, K., Voth, G. A., Salvador, P., Dannenberg, J. J., Zakrzewski, V. G., Dapprich, S., Daniels, A. D., Strain, M. C., Farkas, O., Malick, D. K., Rabuck, A. D., Raghavachari, K., Foresman, J. B., Ortiz, J. V., Cui, Q., Baboul, A. G., Clifford, S., Cioslowski, J., Stefanov, B. B., Liu, G., Liashenko, A., Piskorz, P., Komaromi, I., Martin, R. L., Fox, D. J., Keith, T., Al-Laham, M. A., Peng, C. Y., Nanayakkara, A., Challacombe, M., Gill, P. M. W., Johnson, B., Chen, W., Wong, M. W., Gonzalez, C., and Pople, J. A. (2004) Gaussian 03 revision C.02, Gaussian Inc., Wallingford, CT
47. Cancès, E., Mennucci, B., and Tomasi, J. (1997) J. Chem. Phys. 107,3032-3041
48. Mennucci, B., and Tomasi, J. (1997) J. Chem. Phys. 106, 5151-5158
49. Lorković, Z. J., Schröder, W. P., Pakrasi, H. B., Irrgang, K.-D., Herrmann, R. G., and Oelmüller, R. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 8930-8934
50. Fujimori, T., Hihara, Y., and Sonoike, K. (2005) J. Biol. Chem. 23, 22191-22197
51. Mi, D., Chen, M., Lin, S., Lince, M., Larkum, A. W. D., and Blankenship, R. E. (2003) J. Phys. Chem. B 107, 1452-1457
52. Mimuro, M., Tsuchiya, T., Inoue, H., Sakuragi, Y., Itoh, Y., Gotoh, T., Miyashita, H., Bryant, D. A., and Kobayashi, M. (2005) FEBS Lett. 579, 3493-3496
53. Lutz, M., and Mäntele, W. (1991) in Chlorophylls (Scheer, H., ed) pp. 855-902, CRC Press, Boca Raton, FL
54. Noguchi, T., Tomo, T., and Inoue, Y. (1998) Biochemistry 37, 13614-13625
55. Breton, J. (2001) Biochim. Biophys. Acta 1507, 180-193
56. Akiyama, M., Miyashita, H., Kise, H., Watanabe, T., Mimuro, M., Miyachi, S., and Kobayashi, M. (2002) Photosynth. Res. 74, 97-107
57. Akiyama, M., Gotoh, T., Kise, H., Miyashita, H., Mimuro, M., and Kobayashi, M. (2004) Jpn. J. Phycology 52, 67-72
58. Yamasaki, H., Nakamura, H., and Takano, Y. (2007) Chem. Phys. Lett. 447, 324-329
59. Ide, J. P., Klug, D. R., Kühlbrandt, W., Giorgi, L. B., and Porter, G. (1987) Biochim. Biophys. Acta 893, 349-364
60. Booth, P. J., Crystall, B., Giorgi, L. B., Barber, J., Klug, D. R., and Porter, G. (1990) Biochim. Biophys. Acta 1016, 141-152
61. Owens, T. G., Webb, S. P., Mets, L., Alberte, R. S., and Fleming, G. R. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 1532-1536
62. Mimuro, M., Akimoto, S., Tomo, T., Yokono, M., Miyashita, H., and Tsuchiya, T. (2007) Biochim. Biophys. Acta 1767, 327-334
63. Nakamura, Y., Kaneko, T., Sato, S., Mimuro, M., Miyashita, H., Tsuchiya, T., Sasamoto, S., Watanabe, A., Kawashima, K., Kishida, Y., Kiyokawa, C., Kohara, M., Matsumoto, M., Matsuno, M., Nakazaki, N., Shimpo, S., Takeuchi, C., Yamada, M., and Tabata, S. (2003) DNA Res. 10, 137-145
64. Inoue, H., Tsuchiya, T., Satoh, S., Miyashita, H., Kaneko, T., Tabata, S., Tanaka, A., and Mimuro, M. (2004) FEBS Lett. 578, 275-279
65. Marquardt, J., Senger, H., Miyashita, H., Miyachi, S., and Mörschel, E. (1997) FEBS Lett. 410, 428-432
66. Amunts, A., Drory, O., and Nelson, N. (2007) Nature 447, 58-63
67. Shevela, D., Nöring, B., Eckert, H.-J., Messinger, J., and Renger, G. (2006) Phys. Chem. Chem. Phys. 8, 3460-3466
68. Battistuzzi, G., Borsari, M., Loschi, L., Righi, F., and Sola, M. (1999) J. Am. Chem. Soc. 121, 501-506
69. Díaz-Quintana, A., Navarro, J. A., Hervás, M., Molina-Heredia, F. P., de la Cerda, B., and de la Rosa, M. A. (2003) Photosynth. Res. 75, 97-110
70. Hervás, M., Navarro, F., José, A., Sebastián, C., Díaz, A., Chávez, S., Florencio, F. J., and de la Rosa, M (1993) FEBS Lett. 319, 257-260
71. Sigfridsson, K., Hansson, O., Karksson, B. G., Baltzer, L., Nordling, M., and Lundberg, L. G. (1995) Biochim. Biophys. Acta 1228, 28-36
72. Sanderson, D., Anderson, L. B., and Gross, E. L. (1986) Biochim. Biophys. Acta 852, 269-278
73. Breton, J., Nabedryk, E., and Leibl, W. (1999) Biochemistry 38, 11585-11692
74. Webber, A. N., and Lubitz, W. (2001) Biochim. Biophys. Acta 1507, 61-79
75. Mino, H., Kawamori, A., Aoyama, D., Tomo, T., Iwaki, M., and Itoh, S. (2005) Chem. Phys. Lett. 411, 262-266
76. Schwede, T., Kopp, J., Guex, N., and Peitsch, M. C. (2003) Nucleic Acids Res. 31, 3381-3385
77. Hastings, G., Kleinherenbrink, F. A. M., Lin S., McHugh, T. J., and Blankenship, R. E. (1994) Biochemistry 33, 3193-3200
78. Itoh, S., Mino, H., Itoh, K., Shigenaga, T., Uzumaki, T., and Iwaki, M. (2007) Biochemistry 46, 12473-12481