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Volumn 105, Issue 32, 2008, Pages 11116-11121

Structure of a small-molecule inhibitor of a DNA polymerase sliding clamp

Author keywords

Antibiotic target; Crystallography; Fluorescence anisotropy; Rational drug design

Indexed keywords

DNA DIRECTED DNA POLYMERASE ALPHA; DNA DIRECTED DNA POLYMERASE GAMMA; DNA POLYMERASE; ESCHERICHIA COLI PROTEIN; PROTEIN BETA CLAMP;

EID: 49649087259     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0804754105     Document Type: Article
Times cited : (90)

References (27)
  • 1
    • 22244478079 scopus 로고    scopus 로고
    • Cellular DNA replicases: Components and dynamics at the replication fork
    • Johnson A, O'Donnell M (2005) Cellular DNA replicases: Components and dynamics at the replication fork. Annu Rev Biochem 74:283-315.
    • (2005) Annu Rev Biochem , vol.74 , pp. 283-315
    • Johnson, A.1    O'Donnell, M.2
  • 3
    • 0141677891 scopus 로고    scopus 로고
    • Chromosomal replicases as asymmetric dimers: Studies of subunit arrangement and functional consequences
    • McHenry CS (2003) Chromosomal replicases as asymmetric dimers: Studies of subunit arrangement and functional consequences. Mol Microbiol 49:1157-1165.
    • (2003) Mol Microbiol , vol.49 , pp. 1157-1165
    • McHenry, C.S.1
  • 4
    • 0026717535 scopus 로고
    • Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: A sliding DNA clamp
    • Kong XP, Onrust R, O'Donnell M, Kuriyan J (1992) Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: A sliding DNA clamp. Cell 69:425-437.
    • (1992) Cell , vol.69 , pp. 425-437
    • Kong, X.P.1    Onrust, R.2    O'Donnell, M.3    Kuriyan, J.4
  • 5
    • 0028618183 scopus 로고
    • Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
    • Krishna TS, Kong XP, Gary S, Burgers PM, Kuriyan J (1994) Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA. Cell 79:1233-1243.
    • (1994) Cell , vol.79 , pp. 1233-1243
    • Krishna, T.S.1    Kong, X.P.2    Gary, S.3    Burgers, P.M.4    Kuriyan, J.5
  • 6
    • 0035107856 scopus 로고    scopus 로고
    • Crystal structure of an archaeal DNA sliding clamp: Proliferating cell nuclear antigen from Pyrococcus furiosus
    • Matsumiya S, Ishino Y, Morikawa K (2001) Crystal structure of an archaeal DNA sliding clamp: Proliferating cell nuclear antigen from Pyrococcus furiosus. Protein Sci 10:17-23.
    • (2001) Protein Sci , vol.10 , pp. 17-23
    • Matsumiya, S.1    Ishino, Y.2    Morikawa, K.3
  • 7
    • 0032031972 scopus 로고    scopus 로고
    • PCNA binding through a conserved motif
    • Warbrick E (1998) PCNA binding through a conserved motif. BioEssays 20:195-199.
    • (1998) BioEssays , vol.20 , pp. 195-199
    • Warbrick, E.1
  • 8
    • 0030592544 scopus 로고    scopus 로고
    • Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA
    • Gulbis JM, Kelman Z, Hurwitz J, O'Donnell M, Kuriyan J (1996) Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA. Cell 87:297-306.
    • (1996) Cell , vol.87 , pp. 297-306
    • Gulbis, J.M.1    Kelman, Z.2    Hurwitz, J.3    O'Donnell, M.4    Kuriyan, J.5
  • 9
    • 2442507194 scopus 로고    scopus 로고
    • Inhibition of protein interactions with the beta 2 sliding clamp of Escherichia coli DNA polymerase III by peptides from beta 2-binding proteins
    • Wijffels G, et al. (2004) Inhibition of protein interactions with the beta 2 sliding clamp of Escherichia coli DNA polymerase III by peptides from beta 2-binding proteins. Biochemistry 43:5661-5671.
    • (2004) Biochemistry , vol.43 , pp. 5661-5671
    • Wijffels, G.1
  • 10
    • 0346654081 scopus 로고    scopus 로고
    • Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competition between replicative and translesion DNA polymerases
    • Burnouf DY, et al. (2004) Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competition between replicative and translesion DNA polymerases. J Mol Biol 335:1187-1197.
    • (2004) J Mol Biol , vol.335 , pp. 1187-1197
    • Burnouf, D.Y.1
  • 11
    • 0035943399 scopus 로고    scopus 로고
    • Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III
    • Jeruzalmi D, et al. (2001) Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell 106:417-428.
    • (2001) Cell , vol.106 , pp. 417-428
    • Jeruzalmi, D.1
  • 12
    • 0242389787 scopus 로고    scopus 로고
    • Structural basis for recruitment of translesion DNA polymerase Pol IV/DinB to the beta-clamp
    • Bunting KA, Roe SM, Pearl LH (2003) Structural basis for recruitment of translesion DNA polymerase Pol IV/DinB to the beta-clamp. EMBO J 22:5883-5892.
    • (2003) EMBO J , vol.22 , pp. 5883-5892
    • Bunting, K.A.1    Roe, S.M.2    Pearl, L.H.3
  • 13
    • 2542440567 scopus 로고    scopus 로고
    • Error-prone replication for better or worse
    • Tippin B, Pham P, Goodman MF (2004) Error-prone replication for better or worse. Trends Microbiol 12:288-295.
    • (2004) Trends Microbiol , vol.12 , pp. 288-295
    • Tippin, B.1    Pham, P.2    Goodman, M.F.3
  • 14
    • 0033003760 scopus 로고    scopus 로고
    • A simple statistical parameter for use in evaluation and validation of high throughput screening assays
    • Zhang JH, Chung TD, Oldenburg KR (1999) A simple statistical parameter for use in evaluation and validation of high throughput screening assays. J Biomol Screen 4:67-73.
    • (1999) J Biomol Screen , vol.4 , pp. 67-73
    • Zhang, J.H.1    Chung, T.D.2    Oldenburg, K.R.3
  • 16
    • 20444420519 scopus 로고    scopus 로고
    • A bipartite polymerase-processivity factor interaction: Only the internal beta binding site of the alpha subunit is required for processive replication by the DNA polymerase III holoenzyme
    • Dohrmann PR, McHenry CS (2005) A bipartite polymerase-processivity factor interaction: Only the internal beta binding site of the alpha subunit is required for processive replication by the DNA polymerase III holoenzyme. J Mol Biol 350:228-239.
    • (2005) J Mol Biol , vol.350 , pp. 228-239
    • Dohrmann, P.R.1    McHenry, C.S.2
  • 18
    • 0030070111 scopus 로고    scopus 로고
    • A molecular switch in a replication machine defined by an internal competition for protein rings
    • Naktinis V, Turner J, O'Donnell M (1996) A molecular switch in a replication machine defined by an internal competition for protein rings. Cell 84:137-145.
    • (1996) Cell , vol.84 , pp. 137-145
    • Naktinis, V.1    Turner, J.2    O'Donnell, M.3
  • 19
    • 9144264274 scopus 로고    scopus 로고
    • Defining the position of the switches between replicative and bypass DNA polymerases
    • Fujii S, Fuchs RP (2004) Defining the position of the switches between replicative and bypass DNA polymerases. EMBO J 23:4342-4352.
    • (2004) EMBO J , vol.23 , pp. 4342-4352
    • Fujii, S.1    Fuchs, R.P.2
  • 21
    • 23044493331 scopus 로고    scopus 로고
    • Conserved interactions in the Staphylococcus aureus DNA PolC chromosome replication machine
    • Bruck I, Georgescu RE, O'Donnell M (2005) Conserved interactions in the Staphylococcus aureus DNA PolC chromosome replication machine. J Biochem 280:18152-18162.
    • (2005) J Biochem , vol.280 , pp. 18152-18162
    • Bruck, I.1    Georgescu, R.E.2    O'Donnell, M.3
  • 22
    • 0034714299 scopus 로고    scopus 로고
    • Cross-utilization of the beta sliding clamp by replicative polymerases of evolutionary divergent organisms
    • Klemperer N, Zhang D, Skangalis M, O'Donnell M (2000) Cross-utilization of the beta sliding clamp by replicative polymerases of evolutionary divergent organisms. J Biochem 275:26136-26143.
    • (2000) J Biochem , vol.275 , pp. 26136-26143
    • Klemperer, N.1    Zhang, D.2    Skangalis, M.3    O'Donnell, M.4
  • 24
    • 3543012707 scopus 로고    scopus 로고
    • Crystallography and NMR system: A new software suite for macromolecular structure determination
    • Brunger AT, et al. (1998) Crystallography and NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr 54:905-921.
    • (1998) Acta Crystallogr , vol.54 , pp. 905-921
    • Brunger, A.T.1
  • 25
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones TA, Zou JY, Cowan SW, Kjeldgaard M (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47(Pt 2):110-119.
    • (1991) Acta Crystallogr A , vol.47 , Issue.PART 2 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 26
    • 0029742925 scopus 로고    scopus 로고
    • Fluorometric assay for DNA polymerases and reverse transcriptase
    • Seville M, West AB, Cull MG, McHenry CS (1996) Fluorometric assay for DNA polymerases and reverse transcriptase. BioTechniques 21:664-672.
    • (1996) BioTechniques , vol.21 , pp. 664-672
    • Seville, M.1    West, A.B.2    Cull, M.G.3    McHenry, C.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.