Interaction of the TFIIB zinc ribbon with RNA polymerase II

Biochemical Society Transactions

Volumn 36, Issue 4, 2008, Pages 595-598

  Elsby, Laura M ^a   Roberts, Stefan G E ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

Pre initiation complex (PIC); Promoter; RNA polymerase II; Transcription; Transcription factor IIB (TFIIB); Zinc ribbon

Indexed keywords

RNA POLYMERASE II; TRANSCRIPTION FACTOR IIB;

AMINO TERMINAL SEQUENCE; ARTICLE; CATALYSIS; GENE MUTATION; GENETIC TRANSCRIPTION; HUMAN; MODEL; MUTANT; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN INTERACTION; PROTEIN MOTIF;

HUMANS; MUTATION; PROTEIN BINDING; RNA POLYMERASE II; TRANSCRIPTION FACTOR TFIIB; TRANSCRIPTION, GENETIC; ZINC;

EID: 49349103104     PISSN: 03005127     EISSN: None     Source Type: Journal    
DOI: 10.1042/BST0360595     Document Type: Article

References (35)

1. Butler, J.E. and Kadonaga, J.T. (2002) The RNA polymerase II core promoter: a key component in the regulation of gene expression. Genes Dev. 16, 2583-2592
2. Hahn, S. (2004) Structure and mechanism of the RNA polymerase II transcription machinery. Nat. Struct. Mol. Biol. 11, 394-403
3. Orphanides, G. and Reinberg, D. (2002) A unified theory of gene expression. Cell 108, 439-451
4. Deng, W. and Roberts, S.G.E. (2007) TFIIB and the regulation of transcription by RNA polymerase II. Chromosoma 116, 417-429
5. Deng, W. and Roberts, S.G.E. (2005) A core promoter element downstream of the TATA box that is recognized by TFIIB. Gene Dev. 19, 2418-2423
6. Lagrange, T., Kapanidis, A.N., Tang, H., Reinberg, D. and Ebright, R.H. (1998) New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB. Genes Dev. 12, 34-44
7. Evans, R., Fairley, J.A. and Roberts, S.G.E. (2001) Activator-mediated disruption of sequence-specific DNA contacts by the general transcription factor TFIIB. Genes Dev. 15, 2945-2949
8. Qureshi, S.A. and Jackson, S.P. (11998) Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strength. Mol Cell. 1, 389-400
9. Gill, G. (2001) Regulation of the initiation of eukaryotic transcription. Essays Biochem. 37, 33-43
10. Lee, T.I. and Young, R.A. (2000) Transcription of eukaryotic protein-coding genes. Annu. Rev. Genet. 34, 77-137
11. Bagby, S., Kim, S., Maldonado, E., Tong, K.I., Reinberg, D. and Ikura, M. (1995) Solution structure of the C-terminal core domain of human TFIIB: similarity to cyclin A and interaction with TATA-binding protein. Cell 82, 857-867
12. Zhu, W., Zeng, Q., Colangelo, C.M., Lewis, M., Summers, M.F. and Scott, R.A. (1996) The N-terminal domain of TFIIB from Pyrococcus furiosus forms a zinc ribbon. Nat. Struct. Biol. 3, 122-124
13. 2+ binding effects on the zinc ribbon of general transcription factor TFIIB. Biochem. J. 378, 317-324
14. Nikolov, D., Chen, B.H., Halay, F.D., Usheva, A.A., Hisatake, K., Lee, D.K., Roeder, R.G. and Burley, S.K. (1995) Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature 377, 119-128
15. Tsai, F.T. and Sigler, P.B. (2000) Structural basis of preinitiation complex assembly on human pol II promoters. EMBO J. 19, 25-36
16. Bushnell, D.A., Westover, K.D., Davis, R.E. and Komberg, R.D. (2004) Structural basis of transcription: an RNA Polymerase II-TFIIB cocrystal at 4.5 Angstroms, Science 303, 983-988
17. Chen, H.-T. and Hahn, S. (2003) Binding of TFIIB to RNA polymerase II: Mapping the binding site for the TFIIB zinc ribbon domain within the preinitiation complex. Mol. Cell 12, 437-447
18. Chen, H.-T. and Hahn, S. (2004) Mapping the location of TFIIB within the RNA polymerase II transcription preinitiation complex: a model for the structure of the PIC. Cell 119, 169-180
19. Fairley, J.A., Evans, R., Hawkes, N.A. and Roberts, S.G.E. (2002) Core promoter-dependent TFIIB conformation and a role for TFIIB conformation in transcription start site selection. Mol. Cell. Biol. 22, 6697-6705
20. Faitar, S.L., Brodie, S.A. and Ponticelli, A.S. (2001) Promoter-specific shifts in transcription initiation conferred by yeast TFIIB mutations are determined by the sequence in the immediate vicinity of the start sites. Mol. Cell. Biol. 21, 4427-4440
21. Hawkes, N.A. and Roberts, S.G.E. (1999) The role of human TFIIB in transcription start site selection in vitro and in vivo. J. Biol. Chem. 274, 14337-14343
22. Pardee, T.S., Bangur, C.S. and Ponticelli, A.S. (1998) The N-terminal region of yeast TFIIB contains two adjacent functional domains involved in stable RNA polymerase II binding and transcription start site selection. J. Biol. Chem. 273, 17859-17864
23. Pinto, I., Ware, D.E. and Hampsey, M. (1992) The yeast SUA7 gene encodes a homolog of human transcription factor TFIIB and is required for normal start site selection in vivo. Cell 68, 977-988
24. Pinto, I., Wu, W.-H., Na, J.G. and Hampsey, M. (1994) Characterization of suo7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast. J. Biol. Chem. 269, 30569-30573
25. Barberis, A., Muller, C.W., Harrison, S.C. and Ptashne, M. (1993) Delineation of two functional regions of transcription factor TFIIB. Proc. Natl. Acad. Sci. U.S.A. 90, 5628-5632
26. Buratowski, S. and Zhou, H. (1993) Functional domains of transcription factor TFIIB. Proc. Natl. Acad. Sci. U.S.A. 90, 5633-5637
27. Ha, I., Roberts, S., Maldonado, E., Sun, X., Kim, L.-U., Green, M.R. and Reinberg, D. (1993) Multiple functional domains of general transcription factor IIB: distinct interactions with two general transcription factors and RNA polymerase II. Genes Dev. 7, 1021-1032
28. Flsby, L.M., O'Donnell, A.J.M., Green, L.M., Sharrocks, A.D. and Roberts, S.G.E. (2006) Assembly of TFIIB at a promoter in vivo requires contact with RNA polymerase II. EMBO Rep. 7, 898-903
29. Tubon, T.C., Tansey, W.P. and Herr, W. (2004) A nonconserved surface of the TFIIB zinc ribbon domain plays a direct role in RNA polymerase II recruitment. Mol. Cell. Biol. 24, 2863-2874
30. Malik, S., Lee, D.K. and Roeder, R.G. (1993) Potential RNA polymerase II-induced interactions of transcription factor TFIIB. Mol. Cell. Biol. 13, 6253-6259
31. Glossop, J.A., Dafforn, T.R. and Roberts, S.G.E. (20DA) A conformational change in TFIIB is required for activator-mediated assembly of the preinitiation complex. Nucleic Acids Res. 32, 1829-1835
32. Pal, M., Ponticelli, A.S. and Luse, D.S (2005) The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II. Mol. Cell 19, 101-110
33. Hawkes, N.A., Evans, R. and Roberts, S.G.E. (2000) The conformation of TFIIB modulates the response to transcriptional activators in vivo. Curr. Biol. 10, 273-276
34. Carpenter, B., Hill, K.J., Chairalambous, M., Wagner, K.J., Lahin, D., James, D.I., Anderson, J.S., Schumacher, V., Royer-Pokora, B., Mann, M. et al. (2004) BASP1 is a transcriptional cosuppressor for the Wilms' tumour suppressor protein WT1. Mol. Cell. Biol. 24, 537-549
35. McKay, L.M., Carpenter, B. and Roberts, S.G.E. (1999) Regulation of the Wilms' tumour suppressor protein transcriptional activation domain. Oncogene 18, 6546-6554