-
1
-
-
0000536073
-
On the mechanism of the development of multiple-drug-resistant clones of Shigella
-
Akiba,T., Koyama,K., Ishiki,Y., Kimura,S. and Fukushima,T. (1960) On the mechanism of the development of multiple-drug-resistant clones of Shigella. Jpn. J. Microbiol., 4, 219-227.
-
(1960)
Jpn. J. Microbiol
, vol.4
, pp. 219-227
-
-
Akiba, T.1
Koyama, K.2
Ishiki, Y.3
Kimura, S.4
Fukushima, T.5
-
2
-
-
0026338873
-
Restriction and modification systems
-
Wilson,G.G. and Murray,N.E. (1991) Restriction and modification systems. Ann. Rev. Genet., 25, 585-627.
-
(1991)
Ann. Rev. Genet
, vol.25
, pp. 585-627
-
-
Wilson, G.G.1
Murray, N.E.2
-
3
-
-
0026087311
-
A family of regulatory genes associated with type II restriction-modification systems
-
Tao,T., Bourne,J.C. and Blumenthal,R.M. (1991). A family of regulatory genes associated with type II restriction-modification systems. J. Bacteriol., 173, 1367-1375.
-
(1991)
J. Bacteriol
, vol.173
, pp. 1367-1375
-
-
Tao, T.1
Bourne, J.C.2
Blumenthal, R.M.3
-
4
-
-
0026526202
-
Regulation of the Bam I restriction-modification system by a small intergenic open reading frame, bamHIC, in both Escherichia coli and Bacillus subtilis
-
Ives,C.L., Nathan,P.D. and Brooks,J.E. (1992) Regulation of the Bam I restriction-modification system by a small intergenic open reading frame, bamHIC, in both Escherichia coli and Bacillus subtilis. J. Bacteriol., 174, 7194-7201.
-
(1992)
J. Bacteriol
, vol.174
, pp. 7194-7201
-
-
Ives, C.L.1
Nathan, P.D.2
Brooks, J.E.3
-
5
-
-
0029030933
-
The eco721C gene specifies a trans-acting factor which influences expression of both DNA methyltransferase and endonuclease from the Eco721 restriction-modification system
-
Rimseliene,R., Vaisvila,R. and Janulaitis,A. (1995) The eco721C gene specifies a trans-acting factor which influences expression of both DNA methyltransferase and endonuclease from the Eco721 restriction-modification system. Gene, 157, 217-219.
-
(1995)
Gene
, vol.157
, pp. 217-219
-
-
Rimseliene, R.1
Vaisvila, R.2
Janulaitis, A.3
-
6
-
-
0033988985
-
Role and mechanism of action of C PvuII, a regulatory protein conserved among restriction-modification systems
-
Vijesurier,R.M., Carlock,L., Blumenthal,R.M. and Dunbar,J.C. (2000) Role and mechanism of action of C PvuII, a regulatory protein conserved among restriction-modification systems. J. Bacteriol., 182, 477-487.
-
(2000)
J. Bacteriol
, vol.182
, pp. 477-487
-
-
Vijesurier, R.M.1
Carlock, L.2
Blumenthal, R.M.3
Dunbar, J.C.4
-
7
-
-
0037437368
-
Esp1396I restriction-modification system: Structural organization and mode of regulation
-
Cesnaviciene,E., Mitkaite,G., Stankevicius,K., Janulaitis,A. and Lubys,A. (2003) Esp1396I restriction-modification system: structural organization and mode of regulation. Nucleic Acids Res. 31, 743-749.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 743-749
-
-
Cesnaviciene, E.1
Mitkaite, G.2
Stankevicius, K.3
Janulaitis, A.4
Lubys, A.5
-
8
-
-
11844250013
-
Nature of the promoter activated by CPvuII, an unusual regulatory protein conserved among restriction-modification systems
-
Knowle,D., Lintner,R.E., Touma,Y.M. and Blumenthal,R.M. (2005) Nature of the promoter activated by CPvuII, an unusual regulatory protein conserved among restriction-modification systems. J. Bacteriol., 187, 488-97.
-
(2005)
J. Bacteriol
, vol.187
, pp. 488-497
-
-
Knowle, D.1
Lintner, R.E.2
Touma, Y.M.3
Blumenthal, R.M.4
-
9
-
-
13444269482
-
DNA footprinting and biophysical characterisation of the controller protein C.AhdI suggests the basis of a genetic switch
-
Streeter,S.D., Papapanagiotou,I., McGeehan,J.E. and Kneale,G.G. (2004) DNA footprinting and biophysical characterisation of the controller protein C.AhdI suggests the basis of a genetic switch. Nucleic Acids Res., 32, 6445-6453.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 6445-6453
-
-
Streeter, S.D.1
Papapanagiotou, I.2
McGeehan, J.E.3
Kneale, G.G.4
-
10
-
-
33646105382
-
Cooperative binding of the C.Ahdl controller protein to the C/R promoter and its role in endonuclease gene expression
-
McGeehan,J.E., Papapanagiotou,I., Streeter,S.D. and Kneale,G.G. (2006). Cooperative binding of the C.Ahdl controller protein to the C/R promoter and its role in endonuclease gene expression. J. Mol. Biol., 358, 523-531.
-
(2006)
J. Mol. Biol
, vol.358
, pp. 523-531
-
-
McGeehan, J.E.1
Papapanagiotou, I.2
Streeter, S.D.3
Kneale, G.G.4
-
11
-
-
13844281073
-
High-resolution crystal structure of the restriction-modification controller protein C.Ahdl from Aeromonas hydrophila
-
McGechan,J. E., Streeter,S., Papapanagiotou,I., Fox,G.C. and Kneale,G.G. (2005) High-resolution crystal structure of the restriction-modification controller protein C.Ahdl from Aeromonas hydrophila. J. Mol. Biol. 346, 689-701.
-
(2005)
J. Mol. Biol
, vol.346
, pp. 689-701
-
-
McGechan, J.E.1
Streeter, S.2
Papapanagiotou, I.3
Fox, G.C.4
Kneale, G.G.5
-
12
-
-
41149103531
-
Transcription regulation of the type II restriction-modification system AhdI
-
Bogdanova,E., Djordjevic,M., Papapanagiotou,I., Heyduk,T., Kneale,G. and Severinov,K. (2008) Transcription regulation of the type II restriction-modification system AhdI. Nucleic Acids Res., 36 1429-1442.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1429-1442
-
-
Bogdanova, E.1
Djordjevic, M.2
Papapanagiotou, I.3
Heyduk, T.4
Kneale, G.5
Severinov, K.6
-
13
-
-
36749088056
-
Regulatory circuit based on autogenous activation-repression: Roles of C-boxes and spacer sequences in control of the PvuII restriction-modification system
-
Mruk,I., Rajesh,P. and Blumenthal,R.M. (2007) Regulatory circuit based on autogenous activation-repression: Roles of C-boxes and spacer sequences in control of the PvuII restriction-modification system. Nucleic Acids Res., 35, 6935-6952.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6935-6952
-
-
Mruk, I.1
Rajesh, P.2
Blumenthal, R.M.3
-
14
-
-
43349095997
-
Real-time kinetics of restriction modification gene expression after entry into a new host cell
-
Mruk,I. and Blumenthal,R.M. (2008) Real-time kinetics of restriction modification gene expression after entry into a new host cell. Nucleic Acids Res., 36, 2581-2593.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2581-2593
-
-
Mruk, I.1
Blumenthal, R.M.2
-
15
-
-
34250312038
-
DNA structural deformations in the interaction of the controller protein C.AhdI with its operator sequence
-
Papapanagiotou,I., Streeter,S.D., Cary,P.D. and Kneale,G.G. (2007) DNA structural deformations in the interaction of the controller protein C.AhdI with its operator sequence. Nucleic Acids Res., 35, 2643-2650.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 2643-2650
-
-
Papapanagiotou, I.1
Streeter, S.D.2
Cary, P.D.3
Kneale, G.G.4
-
16
-
-
0026439782
-
SRY, like HMG1, recognizes sharp angles in DNA
-
Ferrari,S., Harley,V.R., Pontiggia,A., Goodfellow,P.N., Lovell-Badge, R. and Bianchi,M.E. (1992) SRY, like HMG1, recognizes sharp angles in DNA. EMBO J., 11, 4497-4506.
-
(1992)
EMBO J
, vol.11
, pp. 4497-4506
-
-
Ferrari, S.1
Harley, V.R.2
Pontiggia, A.3
Goodfellow, P.N.4
Lovell-Badge, R.5
Bianchi, M.E.6
-
17
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch,W. (1993) Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Cryst., 26, 795-800.
-
(1993)
J. Appl. Cryst
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
18
-
-
23844546311
-
Likelihood-enhanced fast translation functions
-
McCoy,A.J., Grosse-Kunstleve,R.W., Storoni,L.C. and Read,R.J. (2005) Likelihood-enhanced fast translation functions. Acta Crystallog. D Biol. Crystallogr., 61, 458-464.
-
(2005)
Acta Crystallog. D Biol. Crystallogr
, vol.61
, pp. 458-464
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Storoni, L.C.3
Read, R.J.4
-
19
-
-
0028103275
-
The CCP4 suite: Programs for crystallography
-
4
-
CCP4 (1994) The CCP4 suite: Programs for crystallography. Acta Crystallogr. D Biol. Crystallogr., 50, 760-763.
-
(1994)
Acta Crystallogr. D Biol. Crystallogr
, vol.50
, pp. 760-763
-
-
CCP1
-
20
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley,P. and Cowtan,K. (2004) Coot: Model-building tools for molecular graphics. Acta Crystallog. D Biol. Crystallogr., 60, 2126-2132.
-
(2004)
Acta Crystallog. D Biol. Crystallogr
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
21
-
-
11844301261
-
Recent developments in the PHENIX software for automated crystallographic structure determination
-
Adams,P.D., Gopal,K., Grosse-Kunstleve,R.W., Hung,L.W., Ioerger,T.R., McCoy,A.J., Moriarty,N.W., Pai,R.K., Read,R.J., Romo,T.D. et al. (2004) Recent developments in the PHENIX software for automated crystallographic structure determination. J. Synchrotron Radiat., 11, 53-55.
-
(2004)
J. Synchrotron Radiat
, vol.11
, pp. 53-55
-
-
Adams, P.D.1
Gopal, K.2
Grosse-Kunstleve, R.W.3
Hung, L.W.4
Ioerger, T.R.5
McCoy, A.J.6
Moriarty, N.W.7
Pai, R.K.8
Read, R.J.9
Romo, T.D.10
-
22
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov,G.N., Vagin,A.A. and Dodson,E.J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr., 53, 240-255.
-
(1997)
Acta Crystallogr. D Biol. Crystallogr
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
23
-
-
0024058085
-
The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
-
Lavery,R. and Sklenar,H.J. (1988) The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct. Dyn., 6, 63-91.
-
(1988)
J. Biomol. Struct. Dyn
, vol.6
, pp. 63-91
-
-
Lavery, R.1
Sklenar, H.J.2
-
24
-
-
0028184697
-
Measuring the geometry of DNA grooves
-
Stofer,E. and Lavery,R. (1994) Measuring the geometry of DNA grooves. Biopolymers, 34, 337-346.
-
(1994)
Biopolymers
, vol.34
, pp. 337-346
-
-
Stofer, E.1
Lavery, R.2
-
25
-
-
0031574026
-
NUCPLOT: A program to generate schematic diagams of protein-DNA interactions
-
Luscombe,N.M., Laskowski,R.A. and Thornton,J.M. (1997) NUCPLOT: A program to generate schematic diagams of protein-DNA interactions. Nucleic Acids Res., 25, 4940-4945.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4940-4945
-
-
Luscombe, N.M.1
Laskowski, R.A.2
Thornton, J.M.3
-
27
-
-
0028186679
-
Improved plasmid vectors for the analysis of protein-induced DNA bending
-
Zwieb,C. and Adhya,S. (1994) Improved plasmid vectors for the analysis of protein-induced DNA bending. Methods Mol. Biol., 30, 281-294.
-
(1994)
Methods Mol. Biol
, vol.30
, pp. 281-294
-
-
Zwieb, C.1
Adhya, S.2
-
28
-
-
28844494799
-
Crystal structure of the restriction-modification system control element C.BclI and mapping of its binding site
-
Sawaya,M., Zhu,Z., Mersha,F., Chan,S., Dabur,R., Xu,S. and Balendiran,G. (2005) Crystal structure of the restriction-modification system control element C.BclI and mapping of its binding site. Structure, 13 1837-1847.
-
(2005)
Structure
, vol.13
, pp. 1837-1847
-
-
Sawaya, M.1
Zhu, Z.2
Mersha, F.3
Chan, S.4
Dabur, R.5
Xu, S.6
Balendiran, G.7
-
29
-
-
0032499801
-
Three-dimensional structure of the Stat3β homodimer bound to DNA
-
Becker,S., Groner,B. and Muller,C.W. (1998) Three-dimensional structure of the Stat3β homodimer bound to DNA. Nature, 394, 145-151.
-
(1998)
Nature
, vol.394
, pp. 145-151
-
-
Becker, S.1
Groner, B.2
Muller, C.W.3
-
30
-
-
22544460537
-
Crystal structure of bacteriophage λcII and its DNA complex
-
Jain,D., Kim,Y., Maxwell,K.L., Beasley,S., Zhang,R., Gussin,G.N., Edwards,A.M. and Darst,S.A. (2005) Crystal structure of bacteriophage λcII and its DNA complex. Mol. Cell, 19, 259-269.
-
(2005)
Mol. Cell
, vol.19
, pp. 259-269
-
-
Jain, D.1
Kim, Y.2
Maxwell, K.L.3
Beasley, S.4
Zhang, R.5
Gussin, G.N.6
Edwards, A.M.7
Darst, S.A.8
-
31
-
-
36849085981
-
Three-dimensional intricacies in protein-DNA recognition and transcriptional control
-
Harrison,S.C. (2007) Three-dimensional intricacies in protein-DNA recognition and transcriptional control. Nat. Struct. Mol. Biol., 14, 1118-1119.
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 1118-1119
-
-
Harrison, S.C.1
-
32
-
-
0032584223
-
How Cro and lambda repressor distinguish between operators: The structural basis underlying a genetic switch
-
Albright,R.A. and Matthews,B.W. (1998) How Cro and lambda repressor distinguish between operators: The structural basis underlying a genetic switch. Proc. Natl Acad. Sci., 95, 3431-3436.
-
(1998)
Proc. Natl Acad. Sci
, vol.95
, pp. 3431-3436
-
-
Albright, R.A.1
Matthews, B.W.2
-
33
-
-
1342345189
-
Catabolite activator protein: DNA binding and transcription activation
-
Lawson,C.L., Swigo,D., Murakami,K.S., Darst,S.A., Berman,H.M. and Ebright,R.H. (2004). Catabolite activator protein: DNA binding and transcription activation. Curr. Opin. Struct. Biol., 14, 10-20.
-
(2004)
Curr. Opin. Struct. Biol
, vol.14
, pp. 10-20
-
-
Lawson, C.L.1
Swigo, D.2
Murakami, K.S.3
Darst, S.A.4
Berman, H.M.5
Ebright, R.H.6
-
34
-
-
35548931586
-
Functional specificity of a Hox protein mediated by the recognition of minor groove structure
-
Joshi,R., Passner,J.M., Rohs.,R., Jain,R., Sosinsky,A., Crickmore,M.A., Jacob,V., Aggarwal,A.K., Honig,B. and Mann,R.S. (2003) Functional specificity of a Hox protein mediated by the recognition of minor groove structure. Cell, 131, 530-543.
-
(2003)
Cell
, vol.131
, pp. 530-543
-
-
Joshi, R.1
Passner, J.M.2
Rohs, R.3
Jain, R.4
Sosinsky, A.5
Crickmore, M.A.6
Jacob, V.7
Aggarwal, A.K.8
Honig, B.9
Mann, R.S.10
-
35
-
-
0032522139
-
DNA bending: The prevalence of kinkiness and the virtues of normality
-
Dickerson,R.E. (1998) DNA bending: The prevalence of kinkiness and the virtues of normality. Nucleic Acids Res., 26, 1906-1926.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1906-1926
-
-
Dickerson, R.E.1
-
36
-
-
0030590260
-
How proteins recognize the TATA box
-
Juo,Z.S., Chiu,T.K., Leiberman,P.M., Baikalov,I., Berk,A.J. and Dickerson,R.E. (1996) How proteins recognize the TATA box. J. Mol. Biol., 261, 239-254.
-
(1996)
J. Mol. Biol
, vol.261
, pp. 239-254
-
-
Juo, Z.S.1
Chiu, T.K.2
Leiberman, P.M.3
Baikalov, I.4
Berk, A.J.5
Dickerson, R.E.6
|