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Volumn 36, Issue 14, 2008, Pages

A protein-DNA docking benchmark

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; COMPLEX FORMATION; COMPUTER PREDICTION; DNA MODIFICATION; DNA STRUCTURE; GENE REARRANGEMENT; INFORMATION PROCESSING; MOLECULAR DOCKING; PRIORITY JOURNAL; PROTEIN DATA BANK; PROTEIN DNA BINDING; PROTEIN DNA DOCKING; PROTEIN DNA INTERACTION; PROTEIN STRUCTURE; QUALITY CONTROL; STRUCTURE ANALYSIS; ALGORITHM; CHEMICAL STRUCTURE; CHEMISTRY; CLASSIFICATION; CONFORMATION; EVALUATION; PROTEIN BINDING; PROTEIN CONFORMATION;

EID: 49249118038     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn386     Document Type: Article
Times cited : (61)

References (13)
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    • (2005) FEBS J , vol.272 , pp. 293-312
    • van Dijk, A.D.1    Boelens, R.2    Bonvin, A.M.3
  • 2
    • 36749006582 scopus 로고    scopus 로고
    • The targets of CAPRI rounds 6-12
    • Janin,J. (2007) The targets of CAPRI rounds 6-12. Proteins, 69 699-703.
    • (2007) Proteins , vol.69 , pp. 699-703
    • Janin, J.1
  • 3
    • 33746285812 scopus 로고    scopus 로고
    • Information-driven protein-DNA docking using HADDOCK: It is a matter of flexibility
    • van Dijk,M., van Dijk,A.D., Hsu,V., Boelens,R. and Bonvin,A.M. (2006) Information-driven protein-DNA docking using HADDOCK: It is a matter of flexibility. Nucleic Acids Res., 34, 3317-3325.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3317-3325
    • van Dijk, M.1    van Dijk, A.D.2    Hsu, V.3    Boelens, R.4    Bonvin, A.M.5
  • 7
    • 33846036096 scopus 로고    scopus 로고
    • The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data
    • Berman,H., Henrick,K., Nakamura,H. and Markley,J.L. (2007) The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data. Nucleic Acids Res., 35, 301-303.
    • (2007) Nucleic Acids Res , vol.35 , pp. 301-303
    • Berman, H.1    Henrick, K.2    Nakamura, H.3    Markley, J.L.4
  • 8
    • 9944251424 scopus 로고    scopus 로고
    • Deja vu all over again: Finding and analyzing protein structure similarities
    • Sierk,M.L. and Kleywegt,G.J. (2004) Deja vu all over again: Finding and analyzing protein structure similarities. Structure, 12, 2103-2111.
    • (2004) Structure , vol.12 , pp. 2103-2111
    • Sierk, M.L.1    Kleywegt, G.J.2
  • 9
    • 0242396923 scopus 로고    scopus 로고
    • 3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
    • Lu,X.J. and Olson,W.K. (2003) 3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids Res., 31, 5108-5121.
    • (2003) Nucleic Acids Res , vol.31 , pp. 5108-5121
    • Lu, X.J.1    Olson, W.K.2
  • 13
    • 0037442962 scopus 로고    scopus 로고
    • HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
    • Dominguez,C., Boelens,R. and Bonvin,A.M. (2003) HADDOCK: A protein-protein docking approach based on biochemical or biophysical information. J. Am. Chem. Soc., 125, 1731-1737.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 1731-1737
    • Dominguez, C.1    Boelens, R.2    Bonvin, A.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.