Molecular characterization of porcine picobirnaviruses and development of a specific reverse transcription-PCR assay

Journal of Clinical Microbiology

Volumn 46, Issue 7, 2008, Pages 2402-2405

  Carruyo, Gabriela M ^a,b   Mateu, Guaniri ^a   Martínez, Laura C ^c   Pujol, Flor H ^a   Nates, Silvia V ^c   Liprandi, Ferdinando ^a   Ludert, Juan E ^a,d  

^a Instituto Venezolano de Investigaciones Cientificas Centro de Microbiologia y Biologia Celular   (Venezuela)

^b UNIVERSIDAD DEL ZULIA   (Venezuela)

^c FACULTAD DE CIENCIAS MÉDICAS   (Argentina)

^d DEPARTAMENTO DE FÍSICA   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARGENTINA; ARTICLE; FECES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PICOBIRNAVIRUS; PIGLET; POLYACRYLAMIDE GEL ELECTROPHORESIS; PORCINE PICOBIRNAVIRUS; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VENEZUELA; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN; ANIMAL; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR GENETICS; RNA VIRUS INFECTION; SEQUENCE HOMOLOGY; SWINE; SWINE DISEASE; VIROLOGY;

PICOBIRNAVIRUS; SUS;

VIRUS RNA;

ANIMALS; ARGENTINA; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FECES; MOLECULAR SEQUENCE DATA; PHYLOGENY; PICOBIRNAVIRUS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA VIRUS INFECTIONS; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SWINE; SWINE DISEASES; VENEZUELA;

EID: 49049121664     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.00655-08     Document Type: Article

References (30)

1. Atmar, R. L., and M. K. Estes. 2001. Diagnosis of noncultivable gastrointesinal viruses. The human calicivirus. Clin. Microbiol. Rev. 14:15-37.
2. Bányai, K., F. Jakab, G. Reuter, J. Bene, M. Új, B. Melegh, and G. Szücs. 2003. Sequence heterogeneity among human picobirnaviruses detected in a gastroenteritis outbreak. Arch. Virol. 148:2281-2291.
3. Bányai, K., V. Martella, A. Bogdán, P. Forgách, F. Jakab, E. Meleg, H. Bíró, B. Melegh, and G. Szücs. 2008. Genogroup I picobirnaviruses in pigs: evidence for genetic diversity and relatedness to human strains. J. Gen. Virol. 89:534-539.
4. Bhattacharya, R., G. C. Sahoo, M. K. Nayak, D. R. Saha, D. Sur, T. N. Naik, S. K. Bhattacharya, and T. Krishnan. 2006. Molecular epidemiology of human picobirnaviruses among children of slum community in Kolkata, India. Infect. Genet. Evol. 6:453-458.
5. Bhattacharya, R., G. C. Sahoo, M. K. Nayak, K. Rajendran, P. Dutta, U. Mitra, M. K. Bhattacharya, T. N. Naik, S. K. Bhattacharya, and T. Krishnan. 2007. Detection of genogroup I and II human picobirnaviruses showing small genomic RNA profile causing watery diarrhoea among children in Kolkata, India. Infect. Genet. Evol. 7:229-238.
6. Bruenn, J. A. 1991. Relationships among the positive strand and double-stranded RNA viruses as viewed through their RNA-dependent-RNA polymerases. Nucleic Acids Res. 19:217-226.
7. Buzinaro, M. G., P. P. Freitas, J. J. Kisiellus, M. Ueda, and J. A. Jerez. 2003. Identification of a bisegmented double-stranded RNA virus (picobirnavirus) in calf faeces. Vet. J. 166:185-187.
8. Cascio, A., M. Bosco, E. Vizzi, A. Giammanco, D. Ferraro, and S. Arista. 1996. Identification of picobirnavirus from faeces of Italian children suffering from acute diarrhea. Eur. J. Epidemiol. 12:545-547.
9. Chasey, D. 1990. Porcine picobirnavirus in UK. Vet. Record. 126:465.
10. Gallimore, C., H. Appleton, D. Lewis, J. Green, and D. W. Brown. 1995. Detection and characterisation of bisegmented double-stranded RNA viruses (Picobirnavirus) in human faecal specimens. J. Med. Virol. 45:135-140.
11. Gallimore, C., D. Lewis, and D. W. Brown. 1993. Detection and characterization of a novel bisegmented double-stranded RNA virus (picobirnavirus) from rabbit faeces. Arch. Virol. 133:63-73.
12. Gatti, M. S., A. Pestana de Castro, and M. Ferraz. 1989. Viruses with bisegmented double-stranded RNA in pig faeces. Res. Vet. Sci. 47:397-398.
13. Giordano, M., L. Martínez, D. Rinaldi, C. Espul, N. Martínez, M. Isa, A. Depetris, S. Medeot, and S. Nates. 1999. Diarrhea and enteric emerging viruses in HIV-infected patients. AIDS Res. Hum. Retrovir. 15:1427-1432.
14. Green, J., C. I. Gallimore, J. P. Clewley, and D. W. Brown. 1999. Genomic characterisation of the large segment of a rabbit picobirnavirus and comparison with the atypical picobirnavirus of Cryptosporidium parvum. Arch. Virol. 144:2457-2465.
15. Grohmann, G., R. I. Glass, H. G. Pereira, S. S. Monroe, A. W. Hightower, R. Weber, and R. T. Bryan. 1993. Enteric viruses and diarrhea in HIV-infected patients. N. Engl. J. Med. 329:14-20.
16. Haga, I. R., S. S. Martins, S. T. Hosomi, F. Vicentini, H. Tanaka, and M. S. Gatti. 1999. Identification of bisegmented double-stranded RNA virus (Picobirnavirus) in faeces of giant anteaters (Myrmecophaga tridactyla). Vet. J. 158:234-236.
17. Iturriza-Gomara, M., J. Green, D. W. Brown, U. Desselberger, and J. J. Gray. 1999. Comparison of specific and random priming in the reverse transcriptase polymerase chain reaction for genotyping group A rotaviruses. J. Virol. Methods 78:93-103.
18. Jiang, X., P. W. Huang, W. M. Zhong, T. Farkas, D. W. Cubitt, and D. O. Matson. 1999. Design and evaluation of a primer pair that detects both Norwalk-and Sapporo-like caliciviruses by RT-PCR. J. Virol. Methods 83:145-154.
19. Leite, J. P. G., S. P. Monteiro, A. M. Fialho, and H. G. Pereira. 1990. A novel avian virus with trisegmented double-stranded RNA and further observations on previously described similar viruses with bisegmented genome. Virus Res. 16:119-126.
20. Ludert, J. E., and F. Liprandi. 1993. Identification of viruses with bi- and trisegmented double stranded RNA genome in faeces of children with gastroenteritis. Res. Virol. 144:219-224.
21. Ludert, J. E., M. Hidalgo, F. Gil, and F. Liprandi. 1991. Identification in porcine faeces of a novel virus with a bisegmented double stranded RNA genome. Arch. Virol. 117:97-107.
22. Ludert, J. E., L. Abdul-Latif, and F. Liprandi. 1995. Identification of picobirnavirus, viruses with double-stranded RNA in rabbits faeces. Res. Vet. Sci. 59:222-225.
23. Martínez, L. C., M. O. Giordano, M. B. Isa, L. Alvarado, J. V. Pavan, D. Rinaldi, and S. V. Nates. 2003. Molecular diversity of partial-length genomic segment 2 of human picobirnavirus. Intervirology 46:207-213.
24. Masachessi, G., L. C. Martínez, M. O. Giordano, P. A. Barril, B. M. Isa, L. Ferreyra, D. Villareal, M. Carello, C. Asis, and S. V. Nates. 2007. Picobirnavirus (PBV) natural hosts in captivity and virus excretion pattern in infected animals. Arch. Virol. 152:989-998.
25. Novikova, N. A., N. V. Epifanova, O. F. Fedorova, L. N. Golitsyna, and N. V. Kupriyanova. 2003. Detection of picobirnavirus by electrophoresis of RNA in polyacrylamide gel. Vopr. Virusol. 48:41-43.
26. Pongsuwanna, Y., K. Taniguchi, M. Chiwakul, T. Urasawa, F. Wakasugi, C. Jayavasu, and S. Urasawa. 1996. Serological and genomic characterization of porcine rotaviruses in Thailand: detection of a G10 porcine rotavirus. J. Clin. Microbiol. 34:1050-1057.
27. Rosen, B. I., Z. Y. Fang, R. I. Glass, and S. S. Monroe. 2000. Cloning of human picobirnavirus genomic segments and development of an RT-PCR detection assay. Virology 277:316-329.
28. Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
29. Wakuda, M., Y. Pongsuwanna, and K. Taniguchi. 2005. Complete nucleotide sequences of two RNA segments of human picobirnavirus. J. Virol. Methods 126:165-169.
30. Wang, Y., X. Tu, C. Humphrey, H. McClure, X. Jiang, C. Qin, R. I. Glass, and B. Jiang. 2007. Detection of viral agents in fecal specimens of monkeys with diarrhea. J. Med. Primatol. 36:101-107.