-
1
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman, S. B. and Wunsch, C. D. (1970). A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48, 443-453.
-
(1970)
J. Mol. Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W. R. and Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85, 2444-2448.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
5
-
-
0029115481
-
A sequence property approach to searching protein databases
-
Hobohm, U. and Sander, C. (1995). A sequence property approach to searching protein databases. J. Mol. Biol. 251, 390-399.
-
(1995)
J. Mol. Biol
, vol.251
, pp. 390-399
-
-
Hobohm, U.1
Sander, C.2
-
6
-
-
0034308142
-
Practical limits of function prediction
-
Devos, D. and Valencia, A. (2000). Practical limits of function prediction. Proteins 41, 98-107.
-
(2000)
Proteins
, vol.41
, pp. 98-107
-
-
Devos, D.1
Valencia, A.2
-
7
-
-
0020820579
-
Classification of proteins into groups based on amino acid composition and other characters. I. Angular distribution
-
Nishikawa, K., Kubota, Y. and Ooi, T. (1983). Classification of proteins into groups based on amino acid composition and other characters. I. Angular distribution. J. Biochem. (Tokyo) 94, 981-995.
-
(1983)
J. Biochem. (Tokyo)
, vol.94
, pp. 981-995
-
-
Nishikawa, K.1
Kubota, Y.2
Ooi, T.3
-
8
-
-
0020817034
-
Classification of proteins into groups based on amino acid composition and other characters. II. Grouping into four types
-
Nishikawa, K., Kubota, Y. and Ooi, T. (1983). Classification of proteins into groups based on amino acid composition and other characters. II. Grouping into four types. J. Biochem. (Tokyo) 94, 997-1007.
-
(1983)
J. Biochem. (Tokyo)
, vol.94
, pp. 997-1007
-
-
Nishikawa, K.1
Kubota, Y.2
Ooi, T.3
-
9
-
-
0028239038
-
Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies
-
Nakashima, H. and Nishikawa, K. (1994). Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies. J. Mol. Biol. 238, 54-61.
-
(1994)
J. Mol. Biol
, vol.238
, pp. 54-61
-
-
Nakashima, H.1
Nishikawa, K.2
-
10
-
-
0031588694
-
Relation between amino acid composition and cellular location of proteins
-
Cedano, J., Aloy, P., Pérez-Pons, J. A. and Querol, E. (1997). Relation between amino acid composition and cellular location of proteins. J. Mol. Biol. 266, 594-600.
-
(1997)
J. Mol. Biol
, vol.266
, pp. 594-600
-
-
Cedano, J.1
Aloy, P.2
Pérez-Pons, J.A.3
Querol, E.4
-
11
-
-
3242877807
-
ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST
-
Bhasin, M. and Raghava, G. P. S. (2004). ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST. Nucleic Acids Res. 32, W414-419.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bhasin, M.1
Raghava, G.P.S.2
-
12
-
-
0032940342
-
Protein subcellular location prediction
-
Chou, K.-C. and Elrod, D. W. (1999). Protein subcellular location prediction. Protein Eng. 12, 107-118.
-
(1999)
Protein Eng
, vol.12
, pp. 107-118
-
-
Chou, K.-C.1
Elrod, D.W.2
-
13
-
-
33646852452
-
Prediction of mitochondrial proteins using support vector machine and hidden Markov model
-
Kumar, M., Verma, R. and Raghava, G. P. S. (2006). Prediction of mitochondrial proteins using support vector machine and hidden Markov model. J. Biol. Chem. 281, 5357-5363.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 5357-5363
-
-
Kumar, M.1
Verma, R.2
Raghava, G.P.S.3
-
14
-
-
3843117638
-
Predicting protein structural class by functional domain composition
-
Chou, K.-C. and Cai, Y.-D. (2004). Predicting protein structural class by functional domain composition. Biochem. Biophys. Res. Commun. 321 1007-1009.
-
(2004)
Biochem. Biophys. Res. Commun
, vol.321
, pp. 1007-1009
-
-
Chou, K.-C.1
Cai, Y.-D.2
-
15
-
-
0033406884
-
Prediction of protein secondary structure content
-
Liu, W.-m. and Chou, K.-C. (1999). Prediction of protein secondary structure content. Protein Eng. 12, 1041-1050.
-
(1999)
Protein Eng
, vol.12
, pp. 1041-1050
-
-
Liu, W.-M.1
Chou, K.-C.2
-
16
-
-
0035874091
-
Prediction of protein cellular attributes using pseudo-amino acid composition
-
Chou, K.-C. (2001). Prediction of protein cellular attributes using pseudo-amino acid composition. Proteins 43, 246-255.
-
(2001)
Proteins
, vol.43
, pp. 246-255
-
-
Chou, K.-C.1
-
17
-
-
21244494076
-
Using pseudo amino acid composition to predict protein subcellular location: Approached with Lyapunov index, Bessel function, and Chebyshev filter
-
Gao, Y., Shao, S., Xiao, X., Ding, Y., Huang, Y., Huang, Z. and Chou, K.-C. (2005). Using pseudo amino acid composition to predict protein subcellular location: Approached with Lyapunov index, Bessel function, and Chebyshev filter. Amino Acids 28, 373-376.
-
(2005)
Amino Acids
, vol.28
, pp. 373-376
-
-
Gao, Y.1
Shao, S.2
Xiao, X.3
Ding, Y.4
Huang, Y.5
Huang, Z.6
Chou, K.-C.7
-
18
-
-
12744279642
-
Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
-
Chou, K.-C. (2005). Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics 21, 10-19.
-
(2005)
Bioinformatics
, vol.21
, pp. 10-19
-
-
Chou, K.-C.1
-
19
-
-
33748287103
-
Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network
-
Chen, C., Zhou, X., Tian, Y., Zou, X. and Cai, P. (2006). Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network. Anal. Biochem. 357, 116-121.
-
(2006)
Anal. Biochem
, vol.357
, pp. 116-121
-
-
Chen, C.1
Zhou, X.2
Tian, Y.3
Zou, X.4
Cai, P.5
-
20
-
-
33747880465
-
Ensemble classifier for protein fold pattern recognition
-
Shen, H.-B. and Chou, K.-C. (2006). Ensemble classifier for protein fold pattern recognition. Bioinformatics 22, 1717- 1722.
-
(2006)
Bioinformatics
, vol.22
, pp. 1717-1722
-
-
Shen, H.-B.1
Chou, K.-C.2
-
21
-
-
33749596030
-
Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification
-
Mondal, S., Bbavna, R., Mohan Babu, R. and Ramakumar, S. (2006). Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification. J. Theor. Biol. 243, 252-260.
-
(2006)
J. Theor. Biol
, vol.243
, pp. 252-260
-
-
Mondal, S.1
Bbavna, R.2
Mohan Babu, R.3
Ramakumar, S.4
-
22
-
-
13444301472
-
PSORTdb: A protein subcellular localization database for bacteria
-
Rey, S., Acab, M., Gardy, J. L., Laird, M. R., deFays, K., Lambert, C. and Brinkman, F. S. L. (2005). PSORTdb: A protein subcellular localization database for bacteria. Nucleic Acids Res. 33, D164-168.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Rey, S.1
Acab, M.2
Gardy, J.L.3
Laird, M.R.4
deFays, K.5
Lambert, C.6
Brinkman, F.S.L.7
-
23
-
-
33846093379
-
eSLDB: Eukaryotic subcellular localization database
-
Pierleoni, A., Martelli, P. L., Fariselli, P. and Casadio, R. (2007). eSLDB: Eukaryotic subcellular localization database. Nucleic Acids Res. 35, D208-212.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Pierleoni, A.1
Martelli, P.L.2
Fariselli, P.3
Casadio, R.4
-
24
-
-
0035072551
-
Clustering of highly homologous sequences to reduce the size of large protein databases
-
Li, W., Jaroszewski, L. and Godzik, A. (2001). Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics 17, 282-283.
-
(2001)
Bioinformatics
, vol.17
, pp. 282-283
-
-
Li, W.1
Jaroszewski, L.2
Godzik, A.3
-
25
-
-
33646510075
-
Predicting rRNA, RNA-, and DNA-binding proteins from primary structure with support vector machines
-
Yu, X., Cao, J., Cai, Y., Shi, T. and Li, Y. (2006). Predicting rRNA, RNA-, and DNA-binding proteins from primary structure with support vector machines. J. Theor. Biol. 240, 175-184.
-
(2006)
J. Theor. Biol
, vol.240
, pp. 175-184
-
-
Yu, X.1
Cao, J.2
Cai, Y.3
Shi, T.4
Li, Y.5
-
26
-
-
0034843744
-
Support vector machine approach for protein subcellular localization prediction
-
Hua, S. and Sun, Z. (2001). Support vector machine approach for protein subcellular localization prediction. Bioinformatics 17, 721-728.
-
(2001)
Bioinformatics
, vol.17
, pp. 721-728
-
-
Hua, S.1
Sun, Z.2
-
27
-
-
0032077533
-
Using neural networks for prediction of the subcellular location of proteins
-
Reinhardt, A. and Hubbard, T. (1998). Using neural networks for prediction of the subcellular location of proteins. Nucleic Acids Res. 26, 2230-2236.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 2230-2236
-
-
Reinhardt, A.1
Hubbard, T.2
|