Conservation genetics of endangered Brasenia schreberi based on RAPD and AFLP markers

Journal of Plant Biology

Volumn 51, Issue 4, 2008, Pages 260-268

  Kim, Changkyun ^a   Na, Hye Ryun ^a   Choi, Hong Keun ^a  

^a Ajou University   (South Korea)

Author keywords

AFLP; Brasenia schreberi; Conservation; Endangered species; Genetic diversity; RAPD

Indexed keywords

BRASENIA SCHREBERI;

EID: 48649093274     PISSN: 12269239     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF03036125     Document Type: Article

References (60)

1. Archak S, Gaiwad AB, Gautam D, Rao EWB, Swamy KRM, Karihaloo JL (2003) Comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, and AFLP) for genetic analysis of cashew (Anacardium occidental L.) accessions of India. Genome 46: 362-369
2. Aston, HI (1977) Aquatic Plants of Australia. Melbourne University Press, Australia, pp 46-48
3. Bertin Rl (1993) Incidence of monoecy and dichogamy in relation to self-fertilization in angiosperms. Amer J Bot 80: 557-560
4. Chen D-H, Ronald PC (1999) A rapid DNA minipreparation method suitable for AFLP and other PCR applications. Plant Mol Biol Rep 17: 53-57
5. Chen J, Gituru WR, Liu X, Wang Q (2007) Genetic diversity in Isoetes yunguiensis, a rare and endangered endemic fern in China. Front Biol China 2: 46-49
6. Chen Y-Y, Li X-L, Yin L-Y, Li W (2008) Genetic diversity of the threatened aquatic plant Ottelia alismoides in Yangtze River. Aquat Bot 88: 10-16
7. Choi H-K (2007) Cabombaceae Rich ex A Rich, In C-w Park et al., eds, The Genera of Vascular Plants of Korea. Academy Publishing Co. Press, Seoul, p 163
8. Chrysler MA (1938) The winter buds of Brasenia. Bull Torrey Bot Club 65: 277-283
9. Dong Y-H, Chen J-M, Gituru RW, Wang Q-F (2007) Gene flow in populations of the endangered aquatic fern Ceratopteris pteridoides in China as revealed by ISSR. Aquat Bot 87: 69-74
10. Elakovich SD, Wooten JW (1987) An examination of the phytotoxicity of the water shield, Brasenia schreberi. J Chem Ecol 13: 1935-1940
11. Excoffier L (1993) Analysis of Molecular Variance (AMOVA), ver. 1.55. Genetics and Biometry Laboratory, University of Geneva, Switzerland
12. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variation inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131: 479-491
13. Fischer M, Husi R, Prati D, Peintinger M, Kleunen M, Schmid B (2000) RAPD variation among and within small and large populations of the rare clonal plant Ranunculus reptans (Ranunculaceae). Amer J Bot 87: 1128-1137
14. Griffin SR, Mavrganis K, Eckert CG (2000) Experimental analysis of protogyny in Aquilegia canadensis (Ranunculaceae). Amer J Bot 87: 1246-1256
15. Hartl DL, Clark AG (1997) Principles of Population Genetics, 3rd ed. Sinauer Associates, Sunderland, MA, USA
16. Holsinger KE, Lewis PO (2005) Hickory: A Package for Analysis of Population Genetic Data, ver. 1.0.4. Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
17. Holsinger KE, Lewis PO, Dey DK (2002) A Bayesian approach to inferring population structure from dominant markers. Mol Ecol 11: 1157-1164
18. Kang M, Ye Q, Huang H (2005) Genetic consequence of restricted habitat and population decline in endangered Isoetes sinensis (Isoetaceae). Ann Bot-London 96: 1265-1274
19. Keiper FJ, McConchie R (2000) An analysis of genetic variation in natural populations of Sticherus flabellatus [R. Br. (St John)] using amplified fragment length polymorphism (AFLP) markers. Mol Ecol 9: 571-581
20. Kim C, Na HR, Choi H-K (2008) Genetic diversity and population structure of endangered Isoetes coreana in South Korea based on RAPD analysis. Aquat Bot 89: 43-49
21. Kim Y-D (1996) Characterization of water and sediment environment in water shield (Brasenia schreberi) habitats. Kor J Ecol 19: 209-216
22. Koga K, Kadono Y, Setoguchi H (2007) The genetic structure of populations of the vulnerable aquatic macrophyte Ranunculus nipponicus (Ranunculaceae). J Plant Res 120: 167-174
23. Lee H-W, Choung H-L, Roh T-H, Kwon Y-H, Kim CH, Hyun J-O, Chang IS (2005) Categorization and Conservation of the Threatened Plant Species in Environmental Impact Assessment. Korea Environment Institute, Seoul
24. Lee NS, Yean SH, Park JO, Roh MS (2006) Molecular evidence for hybridization of Ilex × wandonensis (Aquifoliaceae) by RAPD analysis. J Plant Biol 49: 491-497
25. Lee S, Ma S, Lim Y, Choi H-K, Shin H (2004) Genetic diversity and its implications in the conservation of endangered Zostera japonica in Korea. J Plant Biol 47: 275-281
26. Lesica P, Leary RF, Allendorf FW, Bilderback DE (1988) Lack of genetic diversity within and among populations of an endangered plant, Howellia aquatilis. Conserv Biol 2: 275-282
27. Li W, Xia L-Q, Li J-Q, Wang G-X (2004) Genetic diversity of Potamogeton maackianus in the Yangtze River. Aquat Bot 80: 227-240
28. Liu R Yang YS, Hao CY, Guo WD (2007) Ecological risk assessment using RAPD and distribution pattern of a rare and endangered species. Chemosphere 68: 1497-1505
29. Liu Y, Wang Y, Huang H (2006) High interpopulation genetic differentiation and unidirectional linear migration patterns in Myricaria laxiflora (Tamaricaceae), and endemic riparian plant in the Three Gorges Valley of the Yangtze River. Amer J Bot 93: 206-215.
30. Lopez-Pujol J, Font J, Simon J, Blanche C (2007) Can the preservation of historical relicts permit the conservation of endangered plant species? The case of Silene sennenii (Caryophyllaceae). Conserv Genet 8: 903-912
31. Loveless MD, Hamrick JL (1984) Ecological determinants of genetic structure in populations. Annu Rev Ecol Syst 15: 65-95
32. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220
33. Miller MP (1997) Tools for Population Genetics Analysis (TFGPA). A Windows Program for the Analysis of Allozyme and Molecular Population Genetic Data, ver. 1.3. Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
34. Miller MP (1998) AMOVA-PRER A Program for the Preparation of Input Files from Dominant-marker Row Data, ver. 1.01. Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
35. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590
36. Oh MJ, Na H-R, Choi H-K, Liu JR, Kim SW (2008) High frequency plant regeneration from zygotic-embryo-derived embryogenic cell suspension cultures of watershield (Brasenia schreberi). Plant Biotechnol Rep 2: 87-92
37. Osborn JM, Schneider EL (1988) Morphological studies of the Nymphaceae sensu lato. XVI. The floral biology of Brasenia schreberi. Ann Mo Bot Gard 75: 778-794
38. Palacios C, Gonzalez-Candelas F (1999) AFLP analysis of the critically endangered Limonium cavanillesii (Plumbaginaceae). J Hered 90: 485-489
39. Perez T, Albornoz J, Dominguez A (1998) An evaluation of RAPD fragment reproducibility and nature. Mol Ecol 7: 1347-1357
40. Prentis PJ, Mather PB (2008) Fine-scale patterns of genetic variation indicate non-equilibrium gene frequency divergence in the stream lily, Helmholtzia glaberrima. Freshwater Biol 53: 973-980
41. Raymond M, Dansereau P (1953) The geographical distribution of the bipolar Nymphaceae, Nymphaea tetragona, and Brasenia schreberi. Proc Pacific Sci Congr 5: 122-131
42. Rossetto M, Weaver PK, Dixon KW (1995) Use of RAPD analysis in devising conservation strategies for the rare and endangered Grevillea scapigera (Proteaceae). Mol Ecol 4: 357-364
43. SAS Institute Inc (1999) SAS Proprietary Software, release 8.01. SAS Institute Inc., Cary, NC, USA
44. Schneller JJ, Holderegger R (1996) Genetic variation in small, isolated fern populations. J Veg Sci 7: 113-120
45. Sehgal D, Raina SN (2005) Genotyping safflower (Carthamus tinctorius) cultivars by DNA fingerprints. Euphytica 146: 67-76
46. Shannon CE, Weaver W (1949) The Mathematical Theory of Communication. University of Illinois Press, Urbana, IL, USA
47. Slatkin M (1987) Gene flow and geographic structure of natural populations. Science 236: 787-792
48. Spiegelhalter DJ, Best NG, Carlin BP van der Linde A (2002) Bayesian measures of model complexity and fit. J R Stat Soc [Ser. B] 64: 483-489
49. Swofford DL (1998) PAUR Phylogenetic Analysis Using Parsimony and Other Methods, ver. 4.02. Sinauer Associates Inc., Sunderland, MA, USA
50. Tang S, Bin X, Li W, Zhong Y (2006) Genetic diversity and population structure of yellow camellia (Camellia nitidissima) in China as revealed by RAPD and AFLP markers. Biochem Genet 44: 449-461
51. Taylor ML, Osborn JM (2006) Pollen ontogeny in Brasenia (Cabombaceae, Nymphaeales). Amer J Bot 93: 344-356
52. Tero N, Aspi J, Siikamaki P, Jakalaniemi A, Tuomi J (2003) Genetic structure and gene flow in a metapopulation of an endangered plant species, Silene tatarica. Mol Ecol 12: 2073-2085
53. Uehara K, Tanaka N, Momohara A, Zhou Z-K (2006) Genetic diversity of an endangered aquatic plant, Potamogeton lucens subspecies sinicus. Aquat Bot 85: 350-354
54. Vos R Hogers R, Bleeker M, van de Lee T, Homes M, Fritgers A, Pot J, Pelemon J, Kuiper M, Zabeau M (1995) AFLP: A new technique for DNA fingerprinting. Nucl Acids Res 23: 4407-4414
55. Waycott M, Barnes PAG (2001) AFLP diversity within and between populations of the Caribbean seagrass Thalassia testudinum (Hydrocharitaceae). Mar Biol 139: 1021-1028
56. Wright S (1951) The genetical structure of populations. Ann Eugen 15:323-354
57. Xue J, Zhuo L, Zhou S (2006) Genetic diversity and geographic pattern of wild lotus (Nelumbo nucifera) in Heilongjiang Province. Chin Sci Bull 51: 421-432
58. Yeh F, Yang RC, Boyle T (1997) POPGENE. A User-friendly Shareware for Population Genetic Analysis, ver. 1.31. Molecular and Biotechnology Center, University of Alberta, Edmonton, Alberta, Canada
59. Zawko G, Krauss SL, Dixon KW, Sivasithamparam K (2001) Conservation genetics of the rare and endangered Leucopogon obtectus (Ericaceae). Mol Ecol 10: 2389-2396
60. Zhang D, Chen S, Chen S, Zhang D, Gao Q (2007) Patterns of genetic variation in Swertia przewalskii, an endangered species of the Qinghai-Tibet Plateau. Biochem Genet 45: 33-50