Novel pathogen-specific primers for the detection of Agrobacterium vitis and Agrobacterium tumefaciens

Vitis - Journal of Grapevine Research

Volumn 47, Issue 3, 2008, Pages 181-189

  Bini, F ^a   Kuczmog, A ^b   Putnoky, P ^b   Otten, L ^c   Bazzi, C ^a   Burr, T J ^d   Szegedi, E ^e  

^a UNIVERSITY OF BOLOGNA   (Italy)

^b UNIVERSITY OF PÉCS   (Hungary)

^c INST DE BIOL MOLEC DES PLANTES   (France)

^d Department of Obstetrics Gynecology   (United States)

^e FVM Szoleszeti es Boraszati Kutatointezete Kecskemet   (Hungary)

Author keywords

Grapevine; Oncogenes; Opine types; Polymerase chain reaction; Ti plasmids; Virulence genes

Indexed keywords

AGROBACTERIUM; AGROBACTERIUM TUMEFACIENS; AGROBACTERIUM VITIS; RHIZOBIUM; VITACEAE; VITIS;

EID: 48649085718     PISSN: 00427500     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (41)

1. ABOLMAATY, A.; VU, C.; OLIVER, J.; LEVIN, R. E.; 2000: Development of a new lysis solution for releasing genomic DNA from bacterial cells for DNA amplification by polymerase chain reaction. Microbios 101, 181-189.
2. BAZZI C.; MINARDI P.; BURR T. J.; KATZ B. H.; BISHOP A. L.; BLANCHARD L. M.; 1988: Monoclonal and polyclonal antibodies in a comparative serological study of Agrobacterium Conn. biovars. Phytopathol. mediterr. 27, 51-56.
3. BAZZI C.; PIAZZA C.; BURR T. J.; 1987: Detection of Agrobacterium tumefaciens in grapevine cuttings. EPPO Bull. 17, 105-112.
4. BIEN, E.; LORENZ, D.; EICHHORN, K.; PLAPP, R.; 1990: Isolation and characterization of Agrobacterium tumefaciens from the German vine region Rheinpfalz. J. Plant. Dis. Prot. 97, 313-322.
5. BURR, T. J.; BAZZI, C.; SÜLE, S.; OTTEN, L.; 1998: Crown gall of grape: Biology of Agrobacterium vitis and the development of disease control strategies. Plant Dis. 82, 1288-1297.
6. BURR, T. J.; OTTEN, L.; 1999: Crown gall of grape: biology and disease management. Annu. Rev. Phytopathol. 37, 53-80.
7. BURR, T. J.; REID, C. I.; TAGLIATI, E.; BAZZI, C.; SÜLE, S.; 1997: Biological control of grape crown gall by strain F2/5 is not associated with agrocin production or competition for attachment sites on grape cells. Phytopathology 87, 706-711.
8. CANADAY, J.; GERARD, J. C.; CROUZET, P.; OTTEN, L.; 1992: Organization and functional analysis of three T-DNAs from the vitopine Ti plasmid pTiS4. Mol. Gen. Genet. 235, 292-303.
9. EASTWELL, K. C.; WILLIS, L. G.; CAVILEER, T. D.; 1995: A rapid and sensitive method to detect Agrobacterium vitis in grapevine cuttings using the polymerase chain reaction. Plant Dis. 79, 822-827.
10. GARFINKEL, D. J.; SIMPSON, R. B.; REAM, W.; WHITE, F. F.; GORDON, M. P.; NESTER, E. W. ; 1981: Genetic analysis of crown gall: fine structure map of the T-DNA by site-directed mutagenesis. Cell 27, 143-153.
11. GENOV, I.; ATANASSOV, I.; TSVETKOV, I.; ATANASSOV, A.; 2006 a: Isolation and characterization of Agrobacterium strains from grapevines in Bulgarian vineyards and wild grapes, V. vinifera spp. silvestris. Vitis 45, 97-101.
12. GENOV, I.; ATANASSOV, I.; YORDANOV, Y.; TSVETKOV, I.; ATANASSOV, A.; 2006 b: Genetic diversity of Agrobacterium vitis strains, isolated from grapevines and wild grapes in Bulgaria, assessed by Cleaved Amplified Polymorphic Sequences analysis of 16S-23S rDNA. Vitis 45, 125-130.
13. GERARD, J. C.; CANADAY, J.; SZEGEDI, E.; DELASALLE, H.; OTTEN, L.; 1992: Physical map of the vitopine Ti plasmid pTiS4. Plasmid 28, 146-156.
14. HAAS, J. H.; MOORE, L. W.; REAM, W.; MANULIS, S.; 1995: Universal PCR primers for detection of phytopathogenic Agrobacterium strains. Appl. Environ. Microbiol. 61, 2879-2884.
15. HOOYKAAS, P. J. J.; DEN DULK-RAS, H.; OOMS, G.; SCHILPEROORT, R. A.; 1980: Interactions between octopine and nopaline plasmids in Agrobacterium tumefaciens. J. Bacteriol. 143, 1295-1306.
16. IRELAN, N. A.; MEREDITH, C. P.; 1996: Genetic analysis of Agrobacterium tumefaciens and A. vitis using randomly amplified polymorphic DNA. Am. J. Enol. Vitic. 47, 145-151.
17. KAWAGUCHI, A.; SAWADA, H.; INOUE, K.; NASU, H.; 2005: Multiplex PCR for the identification of Agrobacterium biovar 3 strains. J. Gen. Plant Pathol. (Japan) 71, 54-59.
18. KOMARI, T.; HALPERIN, W.; NESTER, E. W.; 1986: Physical and functional map of supervirulent Agrobacterium tumefaciens tumor inducing plasmid pTiBo542. J. Bacteriol. 166, 88-94.
19. LLOP, P.; LASTRA, B.; MARSAL, H.; MURILLO, J.; LÓPEZ, M. M.; 2003: Tracking Agrobacterium strains by a RAPD system to identify single colonies from plant tumors. Eur. J. Plant Pathol. 109, 381-389.
20. LOUWS, F. J.; RADEMAKER, J. L. W.; DE BRUIJN, F. J.; 1999: The three ds of PCR-based genomic analysis of phytobacteria: diversity, detection and disease diagnosis. Annu. Rev. Phytopathol. 37, 81-125.
21. MILLER, K.; GORE, R. S.; JOHSON, R.; BENESI, A. J.; REINHOLD, V. N.; 1990: Cell-associated oligosaccharides of Bradyrhizobium spp. J. Bacteriol. 172, 136-142.
22. MOMOL, E. A.; BURR, T. J.; REID, C. L.; MOMOL, M. T.; OTTEN, L.; 1998: Genetic diversity of Agrobacterium vitis as determined by DNA fingerprints of the 5' end of the 23S rRNA gene and Random Amplified Polymorphic DNA. J. Appl. Microbiol. 85, 685-692.
23. OTTEN, L.; DE RUFFRAY, P.; 1994: Agrobacterium vitis nopaline Ti plasmid pTiAB4: Relationship to other Ti plasmids and T-DNA structure. Mol. Gen. Genet. 245, 493-505.
24. OTTEN, L.; DE RUFFRAY, P.; MOMOL, E. A.; MOMOL, M. T.; BURR, T. J.; 1996: Phylogenic relationships between Agrobacterium vitis isolates and their Ti plasmids. Mol. Plant-Microbe Interact. 9, 782-786.
25. PAULUS, F.; HUSS, B.; BONNARD, G.; RIDÉ, M.; SZEGEDI, E.; TEMPÉ, J.; PETIT, A.; OTTEN, L.; 1989: Molecular systematics of biotype III Ti plasmids of Agrobacterium tumefaciens. Mol. Plant-Microbe Interact. 2, 64-74.
26. PAULUS, F.; CANADAY, J.; VINCENT, E; BONNARD, G.; KARES, C.; OTTEN, L.; 1991: Sequence of the iaa and ipt region of different Agrobacterium tumefaciens biotype III octopine strains: reconstruction of octopine Ti plasmid evolution. Plant Mol. Biol. 16, 601-614.
27. PETIT, A.; TEMPÉ, J.; 1985: The function of T-DNA in nature. In: VAN VLOTEN-DOTING, L.; GROOT, G. S. P.; HALL, T. C. (Eds): Molecular form and function of the plant genome, 625-636. Plenum Press, New York and London
28. PIONNAT, S.; KELLER, H.; HERICHER, D.; BETTACHINI, A.; DESSAUX Y.; NESMÉ, X.; PONCET, C.; 1999: Ti plasmids from Agrobacterium characterize rootstock clones that initiated a spread of crown gall disease in mediterranean countries. Appl. Environ. Microbiol. 65, 4197-4206.
29. PULAWSKA, J.; SOBICZEWSKI, P. 2005: Development of a semi-nested PCR based method for sensitive detection of tumorigenic Agrobacterium in soil. J. Appl. Microbiol. 98, 710-721.
30. RIDÉ, M.; RIDÉ, S.; PETIT, A.; BOLLET, C.; DESSAUX, Y.; GARDAN, L.; 2000: Characterization of plasmid borne and chromosome encoded traits of Agrobacterium biovar 1, 2 and 3 strains from France. Appl. Environ. Microbiol. 66, 1818-1825.
31. SAWADA, H.; IEKI, H.; MATSUDA, I.; 1995: PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains. Appl. Environm. Microbiol. 61, 828-831.
32. SCHRAMMEIJER, B.; HEMELAAR, J.; HOOYKAAS P. J. J.; 1998: The presence and characterization of virF gene on Agrobacterium tumefaciens Ti plasmids. Mol. Plant-Microbe Interact. 11, 429-433.
33. SCHULZ, T. F.; LORENZ, D.; EICHHORN, K. W.; OTTEN, L.; 1993: Amplification of different marker sequences for identification of Agrobacterium vitis strains. Vitis 32, 179-182.
34. STAPHORST, J. L.; VAN ZYL F. G. H.; STRIJDOM, B. W.; GROENEWOLD, Z. E.; 1985: Agrocin-producing pathogenic and non-pathogenic biotype 3 strains of Agrobacterium tumefaciens active against biotype 3 pathogens. Curr. Microbiol. 12, 45-52.
35. STOVER, E. W.; SWARZ, H. J.; BURR, T. J.; 1997: Susceptibility of a diverse collection of Vitis genotypes to crown gall caused by Agrobacterium vitis. J. Am. Soc. Enol. Vitic. 48, 26-32.
36. SZEGEDI, E.; 2003: Opines in naturally infected grapevine crown gall tumors. Vitis 42, 39-41.
37. SZEGEDI, E.; CZAKÓ, M.; OTTEN, L.; KONCZ, CS.; 1988: Opines in crown gall tumours induced by biotype 3 isolates of Agrobacterium tumefaciens. Physiol. Mol. Plant Pathol. 32, 237-247.
38. SZEGEDI, E.; CZAKÓ, M.; OTTEN, L.; 1996: Further evidence that the vitopine-type pTi's of Agrobacterium vitis represent a novel group of Ti plasmids. Mol. Plant-Microbe Interact. 9, 139-143.
39. SZEGEDI, E.; BOTTKA, S.; 2002: Detection of Agrobacterium vitis by polymerase chain reaction in grapevine bleeding sap after isolation on a semiselective medium. Vitis 41, 37-42.
40. SZEGEDI, E.; BOTTKA, S.; MIKULÁS, J.; OTTEN, L.; SÖLE, S.; 2005: Characterization of Agrobacterium tumefaciens strains isolated from grapevine. Vitis 44, 49-54.
41. TZFIRA, T.; VAIDYA, M.; CITOVSKY, V.; 2004: Involvement of targeted proteolysis in plant genetic transformation by Agrobacterium. Nature 431, 87-92.