-
1
-
-
23844434593
-
Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data
-
16420732
-
Boutros PC Okey AB Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data Brief Bioinform 2005, 6(4):331-343 16420732
-
(2005)
Brief Bioinform
, vol.6
, Issue.4
, pp. 331-343
-
-
Boutros, P.C.1
Okey, A.B.2
-
2
-
-
33748765218
-
Computational Biology: Toward Deciphering Gene Regulatory Information in Mammalian Genomes
-
16984301
-
Ji H Wong WH Computational Biology: Toward Deciphering Gene Regulatory Information in Mammalian Genomes Biometrics 2006, 62(19):645-663 16984301
-
(2006)
Biometrics
, vol.62
, Issue.19
, pp. 645-663
-
-
Ji, H.1
Wong, W.H.2
-
3
-
-
0037339264
-
Clustering of time-course gene expression data using a mixed-effects model with B-splines
-
12611802
-
Luan Y Li H Clustering of time-course gene expression data using a mixed-effects model with B-splines Bioinformatics 2003, 19(4):474-482 12611802
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 474-482
-
-
Luan, Y.1
Li, H.2
-
4
-
-
33747890494
-
A Mixture model with random-effects components for clustering correlated gene-expression profiles
-
16675467
-
Ng SK Mclachlan GJ Wang K Jones LBT Ng SW A Mixture model with random-effects components for clustering correlated gene-expression profiles Bioinformatics 2006, 22(14):1745-1752 16675467
-
(2006)
Bioinformatics
, vol.22
, Issue.14
, pp. 1745-1752
-
-
Ng, S.K.1
Mclachlan, G.J.2
Wang, K.3
Jones, L.B.T.4
Ng, S.W.5
-
5
-
-
22544444517
-
Dynamic model-based clustering for time-course gene expression data
-
16078363
-
Wu FX Zhang WJ Kusalik AJ Dynamic model-based clustering for time-course gene expression data J Bioinform Comput Biol 2005, 3(4):821-836 16078363
-
(2005)
J Bioinform Comput Biol
, vol.3
, Issue.4
, pp. 821-836
-
-
Wu, F.X.1
Zhang, W.J.2
Kusalik, A.J.3
-
6
-
-
33645507298
-
A quantitative study of gene regulation involved in the immune response of Anopheline mosquitoes: An application of Bayesian hierarchical clustering of curves
-
Heard NA Holmes CC Stephens DA A quantitative study of gene regulation involved in the immune response of Anopheline mosquitoes: An application of Bayesian hierarchical clustering of curves Journal of the American Statistical Association 2006, 101(473):18-29
-
(2006)
Journal of the American Statistical Association
, vol.101
, Issue.473
, pp. 18-29
-
-
Heard, N.A.1
Holmes, C.C.2
Stephens, D.A.3
-
7
-
-
0037667290
-
Clustering gene expression data with repeated measurements
-
156590 12734014
-
Yeung KY Medvedovic M Bumgarner RE Clustering gene expression data with repeated measurements Genome Biology 2003, 4(5):R34 156590 12734014
-
(2003)
Genome Biology
, vol.4
, Issue.5
-
-
Yeung, K.Y.1
Medvedovic, M.2
Bumgarner, R.E.3
-
8
-
-
33750021210
-
Evaluation and comparison of gene clustering methods in microarray analysis
-
16882653
-
Thalamuthu A Mukhopadhyay I Zheng X Tseng GC Evaluation and comparison of gene clustering methods in microarray analysis Bioinformatics 2006, 22(19):2405-2412 16882653
-
(2006)
Bioinformatics
, vol.22
, Issue.19
, pp. 2405-2412
-
-
Thalamuthu, A.1
Mukhopadhyay, I.2
Zheng, X.3
Tseng, G.C.4
-
9
-
-
0742306126
-
Enhanced Model-Based Clustering, Density Estimation, and Discriminant Analysis Software: MCLUST
-
Fraley C Raftery AE Enhanced Model-Based Clustering, Density Estimation, and Discriminant Analysis Software: MCLUST Journal of Classification 2003, 20(2):263-286
-
(2003)
Journal of Classification
, vol.20
, Issue.2
, pp. 263-286
-
-
Fraley, C.1
Raftery, A.E.2
-
10
-
-
27744518228
-
Modelling gene expression data over time: Curve clustering with informative prior distributions
-
Wakefield J Zhou C Self G Modelling gene expression data over time: Curve clustering with informative prior distributions Bayesian Statistics 2003
-
(2003)
Bayesian Statistics
-
-
Wakefield, J.1
Zhou, C.2
Self, G.3
-
11
-
-
0032269108
-
How Many Clusters? Which Clustering Method? Answers Via Model-Based Cluster Analysis
-
Fraley C Raftery AE How Many Clusters? Which Clustering Method? Answers Via Model-Based Cluster Analysis The Computer Journal 1998, 41(8):578-588
-
(1998)
The Computer Journal
, vol.41
, Issue.8
, pp. 578-588
-
-
Fraley, C.1
Raftery, A.E.2
-
12
-
-
0041862449
-
Minimum distance procedures
-
Beran R Minimum distance procedures Handbook of Statistics 1984, 4:741-754
-
(1984)
Handbook of Statistics
, vol.4
, pp. 741-754
-
-
Beran, R.1
-
13
-
-
0035419755
-
Parametric statistical modeling by minimum integrated square error
-
Scott DW Parametric statistical modeling by minimum integrated square error Technometrics 2001, 43(3):274-285
-
(2001)
Technometrics
, vol.43
, Issue.3
, pp. 274-285
-
-
Scott, D.W.1
-
14
-
-
15044346962
-
Tight Clustering: A Resampling-Based Approach for Identifying Stable and Tight Patterns in Data
-
15737073
-
Tseng GC Wong WH Tight Clustering: A Resampling-Based Approach for Identifying Stable and Tight Patterns in Data Biometrics 2005, 61:10-16 15737073
-
(2005)
Biometrics
, vol.61
, pp. 10-16
-
-
Tseng, G.C.1
Wong, W.H.2
-
16
-
-
33644855951
-
A data-driven clustering method for time course gene expression data
-
1388097 16510852
-
Ma P Castillo-Davis CI Zhong W Liu JS A data-driven clustering method for time course gene expression data Nucleic Acids Research 2006, 34(4):1261-1269 1388097 16510852
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.4
, pp. 1261-1269
-
-
Ma, P.1
Castillo-Davis, C.I.2
Zhong, W.3
Liu, J.S.4
-
17
-
-
32144435583
-
An approach for clustering gene expression data with error information
-
1360687 16409635
-
Tjaden B An approach for clustering gene expression data with error information BMC Bioinformatics 2006, 7:17 1360687 16409635
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 17
-
-
Tjaden, B.1
-
18
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
10802651
-
Ashburner M Ball CA Blake JA Botstein D Butler H Cherry JM Davis AP Dolinski K Dwight SS Eppig JT Harris MA Hill DP Issel-Tarver L Kasarskis A Lewis S Matese JC Richardson JE Ringwald M Rubin GM Sherlock G Gene ontology: Tool for the unification of biology Nat Genet 2000, 25:25-29 10802651
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
19
-
-
0001473437
-
On the estimation of a probability density function and mode
-
Parzen E On the estimation of a probability density function and mode Annals of Mathematical Statistics 1962, 33:1065-1076
-
(1962)
Annals of Mathematical Statistics
, vol.33
, pp. 1065-1076
-
-
Parzen, E.1
-
21
-
-
33847624973
-
Minimum distance estimation of stationary and non-stationary ARFIMA processes
-
Mayoral L Minimum distance estimation of stationary and non-stationary ARFIMA processes The Econometrics Journal 2007, 10:124-148
-
(2007)
The Econometrics Journal
, vol.10
, pp. 124-148
-
-
Mayoral, L.1
-
22
-
-
0038801353
-
Comparing Analysis Methods for Mutation-Accumulation Data: A Simulation Study
-
1462587 12807799
-
Garcia-Dorado A Gallego A Comparing Analysis Methods for Mutation-Accumulation Data: A Simulation Study Genetics 2003, 164(2):807-819 1462587 12807799
-
(2003)
Genetics
, vol.164
, Issue.2
, pp. 807-819
-
-
Garcia-Dorado, A.1
Gallego, A.2
-
25
-
-
0001640740
-
Robust and efficient estimation by minimising a density power divergence
-
Basu A Harris I Hjort N Jones M Robust and efficient estimation by minimising a density power divergence Biometrika 1998, 85:549-559
-
(1998)
Biometrika
, vol.85
, pp. 549-559
-
-
Basu, A.1
Harris, I.2
Hjort, N.3
Jones, M.4
-
26
-
-
0034782618
-
Model-based clustering and data transformations for gene expression data
-
11673243
-
Yeung K Fraley C Murua A Raftery A Ruzzo W Model-based clustering and data transformations for gene expression data Bioinformatics 2001, 17(10):977-987 11673243
-
(2001)
Bioinformatics
, vol.17
, Issue.10
, pp. 977-987
-
-
Yeung, K.1
Fraley, C.2
Murua, A.3
Raftery, A.4
Ruzzo, W.5
-
27
-
-
84972893020
-
A dendrite method for cluster analysis
-
Calinski T Harabasz J A dendrite method for cluster analysis Comm Statist 1974, 3:1-27
-
(1974)
Comm Statist
, vol.3
, pp. 1-27
-
-
Calinski, T.1
Harabasz, J.2
-
29
-
-
3042686005
-
Bayesian mixture model based clustering of replicated microarray data
-
14871871
-
Medvedovic M Yeung KY Bumgarner RE Bayesian mixture model based clustering of replicated microarray data Bioinformatics 2004, 20(8):1222-1232 14871871
-
(2004)
Bioinformatics
, vol.20
, Issue.8
, pp. 1222-1232
-
-
Medvedovic, M.1
Yeung, K.Y.2
Bumgarner, R.E.3
-
32
-
-
12244250138
-
Mining coherent gene clusters from gene-sample-time microarray data
-
New York, NY, USA: ACM Press
-
Jiang D Pei J Ramanathan M Tang C Zhang A Mining coherent gene clusters from gene-sample-time microarray data KDD '04: Proceedings of the tenth ACM SIGKDD international conference on Knowledge discovery and data mining New York, NY, USA: ACM Press 2004, 430-439
-
(2004)
KDD '04: Proceedings of the Tenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
, pp. 430-439
-
-
Jiang, D.1
Pei, J.2
Ramanathan, M.3
Tang, C.4
Zhang, A.5
-
33
-
-
33745257048
-
The clustering of regression models method with applications in gene expression data
-
16918917
-
Qin L Self SG The clustering of regression models method with applications in gene expression data Biometrics 2006, 62(2):526-533 16918917
-
(2006)
Biometrics
, vol.62
, Issue.2
, pp. 526-533
-
-
Qin, L.1
Self, S.G.2
-
34
-
-
28644452470
-
Clustering short time series gene expression data
-
15961453
-
Ernst J Nau GJ Bar-Joseph Z Clustering short time series gene expression data Bioinformatics 2005, 21(SUPPL. 1): 15961453
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Ernst, J.1
Nau, G.J.2
Bar-Joseph, Z.3
-
35
-
-
0032112293
-
A genome-wide transcriptional analysis of the mitotic cell cycle
-
9702192
-
Cho RJ Campbell MJ Winzeler EA Steinmetz L Conway A Wodicka L Wolfsberg TG Gabrielian AE Landsman D Lockhart DJ Davis RW A genome-wide transcriptional analysis of the mitotic cell cycle Molecular Cell 1998, 2:65-73 9702192
-
(1998)
Molecular Cell
, vol.2
, pp. 65-73
-
-
Cho, R.J.1
Campbell, M.J.2
Winzeler, E.A.3
Steinmetz, L.4
Conway, A.5
Wodicka, L.6
Wolfsberg, T.G.7
Gabrielian, A.E.8
Landsman, D.9
Lockhart, D.J.10
Davis, R.W.11
-
36
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
25624 9843569
-
Spellman P Sherlock G Zhang M Iyer V Anders K Eisen M Brown P Botstein D Futcher B Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization Mol Biol Cell 1998, 9(12):3273-97 25624 9843569
-
(1998)
Mol Biol Cell
, vol.9
, Issue.12
, pp. 3273-3297
-
-
Spellman, P.1
Sherlock, G.2
Zhang, M.3
Iyer, V.4
Anders, K.5
Eisen, M.6
Brown, P.7
Botstein, D.8
Futcher, B.9
-
38
-
-
0035998835
-
Model-Based Clustering, Discriminant Analysis, and Density Estimation
-
Fraley C Raftery A Model-Based Clustering, Discriminant Analysis, and Density Estimation Journal of the American Statistical Association 2002, 97(458):611-631
-
(2002)
Journal of the American Statistical Association
, vol.97
, Issue.458
, pp. 611-631
-
-
Fraley, C.1
Raftery, A.2
-
39
-
-
0033028596
-
Systematic determination of genetic network architecture
-
10391217
-
Tavazoie S Hughes J Campbell M Cho R Church G Systematic determination of genetic network architecture Nat Genet 1999, 22(3):281-285 10391217
-
(1999)
Nat Genet
, vol.22
, Issue.3
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.2
Campbell, M.3
Cho, R.4
Church, G.5
-
40
-
-
0001677717
-
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
-
Benjamini Y Hochberg Y Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing Journal of the Royal Statistical Society 1995, B 57:289-300
-
(1995)
Journal of the Royal Statistical Society
, vol.B57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
42
-
-
0035805255
-
Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network
-
11340206
-
Ideker T Thorsson V Ranish JA Christmas R Buhler J Eng JK Bumgarner R Goodlett DR Aebersold R Hood L Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network Science 2001, 292(5518):929-934 11340206
-
(2001)
Science
, vol.292
, Issue.5518
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.A.3
Christmas, R.4
Buhler, J.5
Eng, J.K.6
Bumgarner, R.7
Goodlett, D.R.8
Aebersold, R.9
Hood, L.10
|