Molecular Evolution of the HBII-52 snoRNA Cluster

Journal of Molecular Biology

Volumn 381, Issue 4, 2008, Pages 810-815

  Nahkuri, Satu ^a   Taft, Ryan J ^a   Korbie, Darren J ^a   Mattick, John S ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

imprinting; SmB; SmN; SNORD119; SNRPN

Indexed keywords

SEROTONIN RECEPTOR; SMALL NUCLEOLAR RNA;

ARTICLE; GENE CLUSTER; GENE CONSTRUCT; GENE DUPLICATION; GENE LOCATION; GENE LOCUS; GENOME ANALYSIS; GENOME IMPRINTING; HUMAN; INTRON; MARSUPIAL; MOLECULAR EVOLUTION; NONHUMAN; NUCLEIC ACID PROBE; ORTHOLOGY; PRIORITY JOURNAL; RNA ANALYSIS; RNA STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

EUTHERIA; METATHERIA;

EID: 48449103055     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2008.06.057     Document Type: Article

References (23)

1. Clouet d'Orval B., Bortolin M.L., Gaspin C., and Bachellerie J.P. Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp. Nucleic Acids Res. 29 (2001) 4518-4529
2. Kiss-Laszlo Z., Henry Y., Bachellerie J.P., Caizergues-Ferrer M., and Kiss T. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell 85 (1996) 1077-1088
3. Schmitt M.E., and Clayton D.A. Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae. Mol. Cell. Biol. 13 (1993) 7935-7941
4. Tycowski K.T., Shu M.D., and Steitz J.A. A mammalian gene with introns instead of exons generating stable RNA products. Nature 379 (1996) 464-466
5. Nam K., Lee G., Trambley J., Devine S.E., and Boeke J.D. Severe growth defect in a Schizosaccharomyces pombe mutant defective in intron lariat degradation. Mol. Cell. Biol. 17 (1997) 809-818
6. Bachellerie J.P., Cavaille J., and Huttenhofer A. The expanding snoRNA world. Biochimie 84 (2002) 775-790
7. Darzacq X., and Kiss T. Processing of intron-encoded box C/D small nucleolar RNAs lacking a 5′,3′-terminal stem structure. Mol. Cell. Biol. 20 (2000) 4522-4531
8. Villa T., Ceradini F., and Bozzoni I. Identification of a novel element required for processing of intron-encoded box C/D small nucleolar RNAs in Saccharomyces cerevisiae. Mol. Cell. Biol. 20 (2000) 1311-1320
9. Kishore S., and Stamm S. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 311 (2006) 230-232
10. Vitali P., Basyuk E., Le Meur E., Bertrand E., Muscatelli F., Cavaille J., and Huttenhofer A. ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs. J. Cell Biol. 169 (2005) 745-753
11. Flomen R., Knight J., Sham P., Kerwin R., and Makoff A. Evidence that RNA editing modulates splice site selection in the 5-HT2C receptor gene. Nucleic Acids Res. 32 (2004) 2113-2122
12. Cavaille J., Buiting K., Kiefmann M., Lalande M., Brannan C.I., Horsthemke B., et al. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. Proc. Natl Acad. Sci. USA 97 (2000) 14311-14316
13. Gray T.A., Smithwick M.J., Schaldach M.A., Martone D.L., Graves J.A., McCarrey J.R., and Nicholls R.D. Concerted regulation and molecular evolution of the duplicated SNRPB′/B and SNRPN loci. Nucleic Acids Res. 27 (1999) 4577-4584
14. Grimaldi K., Horn D.A., Hudson L.D., Terenghi G., Barton P., Polak J.M., and Latchman D.S. Expression of the SmN splicing protein is developmentally regulated in the rodent brain but not in the rodent heart. Dev. Biol. 156 (1993) 319-323
15. Ding F., Li H.H., Zhang S., Solomon N.M., Camper S.A., Cohen P., and Francke U. SnoRNA Snord116 (Pwcr1/MBII-85) deletion causes growth deficiency and hyperphagia in mice. PLoS ONE 3 (2008) e1709
16. Gallagher R.C., Pils B., Albalwi M., and Francke U. Evidence for the role of PWCR1/HBII-85 C/D box small nucleolar RNAs in Prader-Willi syndrome. Am. J. Hum. Genet. 71 (2002) 669-678
17. Ding F., Prints Y., Dhar M.S., Johnson D.K., Garnacho-Montero C., Nicholls R.D., and Francke U. Lack of Pwcr1/MBII-85 snoRNA is critical for neonatal lethality in Prader-Willi syndrome mouse models. Mamm. Genome 16 (2005) 424-431
18. Rogelj B., Hartmann C.E., Yeo C.H., Hunt S.P., and Giese K.P. Contextual fear conditioning regulates the expression of brain-specific small nucleolar RNAs in hippocampus. Eur. J. Neurosci. 18 (2003) 3089-3096
19. Yang J.H., Zhang X.C., Huang Z.P., Zhou H., Huang M.B., Zhang S., et al. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. Nucleic Acids Res. 34 (2006) 5112-5123
20. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
21. Rapkins R.W., Hore T., Smithwick M., Ager E., Pask A.J., Renfree M.B., et al. Recent assembly of an imprinted domain from non-imprinted components. PLoS Genet. 2 (2006) e182
22. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
23. Cavaille J., Seitz H., Paulsen M., Ferguson-Smith A.C., and Bachellerie J.P. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. Hum. Mol. Genet. 11 (2002) 1527-1538