Structural effects of nogalamycin, an antibiotic antitumour agent, on DNA

Biochemical and Biophysical Research Communications

Volumn 374, Issue 2, 2008, Pages 264-268

  Banerjee, T ^a   Mukhopadhyay, R ^a  

^a DEPARTMENT OF MATERIALS SCIENCE   (India)

Author keywords

Anthracyclin; Antibiotic; Antitumour; Atomic force microscopy (AFM); DNA; DNA drug interaction; Intercalation; Nogalamycin; Plectonemic coiling; Single molecule

Indexed keywords

NOGALAMYCIN; PLASMID DNA;

ANTINEOPLASTIC ACTIVITY; ARTICLE; ATOMIC FORCE MICROSCOPY; CIRCULAR DICHROISM; CROSSING OVER; DNA BINDING; DNA DRUG COMPLEX; DNA HELIX; DNA STRUCTURE; DNA SUPERCOILING; DRUG DNA BINDING; DRUG STRUCTURE; INCUBATION TEMPERATURE; INCUBATION TIME; INTERCALATION COMPLEX; PRIORITY JOURNAL; ULTRAVIOLET SPECTROSCOPY;

ANTIBIOTICS, ANTINEOPLASTIC; DNA, SUPERHELICAL; MICROSCOPY, ATOMIC FORCE; NOGALAMYCIN; NUCLEIC ACID CONFORMATION; PLASMIDS;

EID: 48349123224     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2008.07.053     Document Type: Article

References (19)

1. Li L.H., Kuentzel S.L., Murch L.L., Pschigoda L.M., and Krueger W.C. Comparative biological and biochemical effects of nogalamycin and its analogs on L1210 leukemia. Cancer Res. 39 (1979) 4816-4822
2. Gao Y., Liaw Y., Robinson H., and Wang A.H.J. Binding of the antitumour drug nogalamycin and its derivatives to DNA: structural comparison. Biochemistry 29 (1990) 10307-10316
3. Williams L.D., Egli M., Gao Q., Bash P., Marel G.A.V., Boom J.H.V., Rich A., and Frederick C.A. Structure of nogalamycin bound to a DNA hexamer. PNAS 87 (1990) 2225-2229
4. Cruse W.B.T., Saludjian P., Leroux Y., Leger G., Manouni D.E., and Pranges T. A continuous transition from A-DNA to B-DNA in the 1:1 complex between nogalamycin and the hexamer dCCCGGG. J. Biol. Chem. 271 (1996) 15558-15567
5. 2. Biochemistry 27 (1988) 4340-4349
6. Coury J.E., McFail-Islom L., Williams L.D., and Bottomley L.A. A novel assay for drug-DNA binding mode, affinity, and exclusion number: scanning force microscopy. PNAS 93 (1996) 12283-12286
7. Hansma H.G. Surface biology of DNA by atomic force microscopy. Annu. Rev. Phys. Chem. 52 (2001) 71-92
8. Morris V.J., Kirby A.R., and Gunning A.P. Atomic Force Microscopy for Biologists (1999), Imperial College Press
9. Müller D.J., and Dufrêne Y.F. Atomic force microscopy as a multifunctional molecular toolbox in nanobiotechnology. Nat. Nanotechnol. 3 (2008) 261-269
10. Onoa G.B., Cervantes G., Moreno V., et al. Nucleic Acids Res. 26 (1998) 1473-1480
11. Mukhopadhyay R., Dubey P., and Sarkar S. Structural changes of DNA induced by mono- and binuclear cancer drugs. J. Struct. Biol. 150 (2005) 277-283
12. Pope L.H., Davies M.C., Laughton C.A., Roberts C.J., Tendler S.J.B., and Williams P.M. Atomic force microscopy studies of intercalation-induced changes in plasmid DNA tertiary structure. J. Microsc. 199 (2000) 68-78
13. Tseng Y.D., Ge H., Wang X., Edwardson J.M., Waring M.J., Fitzgerald W.J., and Henderson R.M. Atomic force microscopy study of the structural effects induced by echinomycin binding to DNA. J. Mol. Biol. 345 (2005) 745-758
14. Berge T., Jenkins N.S., Hopkirk R.B., Waring M.J., Edwardson J.M., and Henderson R.M. Structural perturbation in DNA caused by bis-intercalation of ditercalinium visualized by atomic force microscopy. Nucleic Acids Res. 30 (2002) 2980-2986
15. Berge T., Haken E.L., Waring M.J., and Henderson R.M. The binding mode of the DNA bisintercalator luzopeptin investigated using atomic force microscopy. J. Struct. Biol. 142 (2002) 241-246
16. Wenner J.R., and Bloomfield V.A. Buffer effects on EcoRV kinetics as measured by fluorescent staining and digital imaging of plasmid cleavage. Anal. Biochem. 268 (1999) 201-212
17. Fox K.R., and Alam Z. Footprinting studies of DNA-sequence recognition by nogalamycin. Eur. J. Biochem. 209 (1992) 31-36
18. Allison M.J., Hud N.V., Balooch M., Tench R.J., Siekhaus W.J., and Balhorn R. Tip-radius-induced artifacts in AFM images of protamine-complexed DNA fibers. Ultramicroscopy 42-44 (1992) 1095-1100
19. Rodger A., Blagborough I.S., Adlam G., and Carpenter M.L. DNA binding of a spermine derivative: spectroscopic study of anthracene-9-carbonyl-N-spermine with poly [dG-C).(d(G-C)] and poly [d(A-T)]. Biopolymers 34 (1994) 1583-1593