QTLs for node of first fruiting branch in a cross of an upland cotton, Gossypium hirsutum L., cultivar with primitive accession Texas 701

Euphytica

Volumn 163, Issue 1, 2008, Pages 113-122

  Guo, Yufang ^a   McCarty, Jack C ^b   Jenkins, Johnie N ^b   Saha, Sukumar ^b  

^a MISSISSIPPI STATE UNIVERSITY   (United States)

^b CROP SCIENCE RESEARCH LABORATORY   (United States)

Author keywords

Cotton; Flowering time; Primitive accession; QTL

Indexed keywords

GOSSYPIUM; GOSSYPIUM HIRSUTUM;

EID: 48349111468     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-007-9613-1     Document Type: Article

References (65)

1. Barrett J (2002) Association studies. In: Camp NJ, Cox A (eds) Quantitative trait loci-methods and protocols. Humana Press, Totowa, NJ, pp 3-12
2. DT Bowman 2000 Attributes of public and private cotton breeding programs J Cotton Sci 4 130 136
3. A Börner GG Buck-sorlin PM Hayes S Malyshev V Korzun 2002 Molecular mapping of major genes and quantitative trait loci determining flowering time in response to photoperiod in barley Plant Breed 121 129 132
4. A Darvasi M Soller 1992 Selective genotyping for determination of linkage between a marker locus and a quantitative trait locus Theor Appl Genet 85 353 359
5. W Guo C Cai C Wang Z Han X Song K Wang X Niu C Wang K Lu B Shi T Zhang 2007 A microsatellite-based, gene rich linkage map reveals genome structure, function, and evolution in Gossypium Genetics 176 527 541
6. 2 performance Crop Sci 42 1841 1847
7. Haley AB, Wilhelm S (1975) Comparative verticillium wilt reaction of wild races of Gossypium hirsutum and hybrids with upland cultivars. In: Brown JM (ed) Proceedings of the beltwide cotton producers conference, New Orleans, LA. 6-8 Jan 1975
8. Z Han C Wang X Song W Guo J Guo C Li X Chen T Zhang 2006 Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton Theor Appl Genet 112 430 439
9. DH He ZX Lin XL Zhang YC Nie XP Guo CD Feng JM Stewart 2005 Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton Euphytica 144 141 149
10. DH He ZX Lin XL Zhang YC Nie XP Guo YX Zhang W Li 2007 QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense Euphytica 153 181 197
11. RN Holley MM Goodman 1989 New sources of resistance to southern corn leaf blight from tropical hybrid maize derivatives Plant Dis 73 562 564
12. Hutchinson JB (1959) The application of genetics to cotton improvement. Cambridge University Press, Cambridge
13. Jenkins JN (1986) Host plant resistance: Advances in cotton. In: Brown JM (ed) Proceedings of the beltwide cotton producers conference, Las Vegas, NV. 4-9 Jan 1986
14. C Jiang R Wright S Woo T Delmonte AH Paterson 2000 QTL analysis of leaf morphology in tetraploid Gossypium (cotton) Theor Appl Genet 100 409 418
15. RP Koester PH Sisco CW Stuber 1993 Identification of quantitative trail loci controlling days to flowering and plant height in two near isogenic loci of maize Crop Sci 33 1209 1216
16. Kohel RJ (1978) Survey of Gossypium hirsutum L. germplasm collection of seed-oil percentage and seed characteristics. USDA Report ARS-S-187
17. RJ Kohel TR Richmond CF Lewis 1974 Genetics of flowering response in cotton. VI. Flowering behavior of Gossypium hirsutum L. and G. barbadense L. hybrids Crop Sci 14 696 699
18. Y Komeda 2004 Genetic regulation of time to flower in Arabidopsis thaliana Annu Rev Plant Biol 55 521 535
19. DD Kosambi 1944 The estimation of map distances from recombination values Ann Eugen 12 172 175
20. JM Lacape TB Nguyen B Courtois JL Belot M Giband JP Gourlot G Gawryziak S Roques B Hau 2005 QTL analysis of cotton fiber quality using multiple Gossypium hirsutum x Gossypium barbadense backcross generations Crop Sci 45 123 140
21. ES Lander L Kruglyak 1995 Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results Nature Genet 11 241 247
22. CF Lewis TR Richmond 1957 The genetics of flowering response in cotton. I. Fruiting behavior of Gossypium hirsutum var. marie-galante in a cross with a variety of cultivated American Upland cotton Genetics 42 499 509
23. CF Lewis TR Richmond 1960 The genetics of flowering response in cotton. II. Inheritance of flowering response in a Gossypium barbadense cross Genetics 45 79 85
24. YR Lin KF Schertz AH Paterson 1995 Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population Genetics 141 391 411
25. S Liu RG Cantrell JC McCarty JM Stewart 2000 Simple sequence repeat-based assessment of genetic diversity in cotton race stock accessions Crop Sci 40 1459 1469
26. WX Liu FL Kong ZL Guo QY Zhang HR Peng XQ Fu FX Yang 2003 An analysis about genetic basis of cotton cultivars in China since 1949 with molecular markers Acta Genet Sin 30 560 570 (in Chinese, English abstract)
27. A Low J Hesketh H Muramoto 1969 Some environmental effects on the varietal node number of the first fruiting branch Cotton Growing Rev 46 181 188
28. Mauney JR (1986) Vegetative growth and development of fruiting sites. In: Mauney JR, Stewart JM (eds) Cotton physiology. The Cotton Foundation, Memphis, TN, pp 11-28
29. JC McCarty JN Jenkins 1993 Registration of 79 day-neutral primitive cotton germplasm lines Crop Sci 33 351
30. JC McCarty JN Jenkins 2004 Primitive cotton germplasm: yield and fiber traits for 21 day-neutral acessions Mississippi Agric For Exp Stn Res Rep 23 14 1 6
31. JC McCarty JN Jenkins WL Parrott RG Creech 1979 The conversion of photoperiodic primitive race stocks of cotton to day-neutral stocks Mississippi Agric For Exp Stn Res Rep 4 19 1 4
32. McCarty JC, Jenkins JN, Tang B (1995) Primitive cotton germplasm: variability for yield and fiber traits. Miss Agric and For Exp Stn Tech Bull 202:8 pp
33. JC McCarty JN Jenkins J Wu 2004 Primitive accession derived germplasm by cultivar crosses as sources for cotton improvement: I. phenotypic values and variance components Crop Sci 44 1226 1230
34. JC McCarty JN Jenkins J Wu 2004 Primitive accession derived germplasm by cultivar crosses as sources for cotton improvement: II. genetic effects and genotypic values Crop Sci 44 1231 1235
35. JC McCarty JN Jenkins J Zhu 1998 Introgression of day-neural genes in primitive cotton accessions: I. Genetic variances and correlations Crop Sci 38 1425 1428
36. JC McCarty J Wu JN Jenkins 2006 Genetic diversity for agronomic and fiber traits in day-neutral accessions derived from primitive cotton germplasm Euphytica 148 283 293
37. SR McCouch YG Cho PE Yano M Blinstrub H Morishima T Kinoshita 1997 Report on QTL nomenclature Rice Genet Newslett 14 11 13
38. M Mei NH Syed W Gao PM Thaxton CW Smith DM Stelly ZJ Chen 2004 Genetic mapping and QTL analysis of fiber-related traits in cotton (Gossypium) Theor Appl Genet 108 280 291
39. Meredith WR (1991) Contributions of introductions to cotton improvement. In: Shands HL, Weisner LE (eds) Use of plant introductions in cultivar development. Part I. Crop Science Society of America, Madison, WI, p 127-146
40. WR Meredith 2000 Cotton yield progress-why has it reached a plateau Better Crops 84 6 9
41. DS Multani BR Lyon 1995 Genetic fingerprinting of Australian cotton cultivars with RAPD markers Genome 38 1005 1008
42. TB Nguyen M Giband P Brottier AM Risterucci JM Lacape 2004 Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers Theor Appl Genet 109 167 175
43. AH Paterson Y Saranga M Menz CX Jiang 2003 QTL analysis of genotype x environment interactions affecting cotton fiber quality Theor Appl Genet 106 384 396
44. Percival AE (1987) The national collection of Gossypium germplasm. Southern Cooperative Serials Bulletin 321:362 pp
45. SN Qureshi S Saha RV Kantety JN Jenkins 2004 EST-SSR: a new class of genetic markers in cotton J Cotton Sci 8 112 123
46. M Rahman D Hussain Y Zafar 2002 Estimation of genetic divergence among elite cotton cultivars-genotypes by DNA fingerprinting technology Crop Sci 42 2137 2144
47. MK Rana KV Bhat 2005 RAPD markers for genetic diversity study among Indian cotton cultivars Curr Sci 88 1956 1961
48. LL Ray TR Richmond 1966 Morphological measures of earliness of crop maturity in cotton Crop Sci 6 527 531
49. OUK Reddy AE Pepper A Ibrokhim S Saha JN Jenkins T Brooks Y Bolek KM El-Zik 2001 New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research J Cotton Sci 5 103 113
50. J Rong C Abbey JE Bowers CL Brubaker C Chang PW Chee TA Delmonte X Ding JJ Garza BS Marler C Park GJ Pierce KM Rainey VK Rastogi SR Schulze NL Trolinder JF Wendel TA Wilkins TD Williams-Coplin RA Wing RJ Wright X Zhao L Zhu AH Paterson 2004 A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium) Genetics 166 389 417
51. SAS Institute Inc. (1999) SAS software version 9.0. SAS Institute Inc., Cary, NC
52. X Shen W Guo Q Lu X Zhu Y Yuan T Zhang 2007 Genetic mapping of quantitative trait loci for fiber quality and yield trait by RIL approach in Upland cotton Euphytica 155 371 380
53. X Shen W Guo X Zhu Y Yuan JZ Yu RJ Kohel T Zhang 2005 Molecular mapping of QTLs for fiber qualities in three diverse lines in Upland cotton using SSR markers Mol Breed 15 169 181
54. X Shen T Zhang W Guo X Zhu X Zhang 2006 Mapping fiber and yield QTLs with main, epistatic, and QTL x enviroment interaction effects in recombinant inbred lines of upland cotton Crop Sci 46 61 66
55. GA Van Esbroeck DT Bowman DS Calhoun OL May 1998 Changes in the genetic diversity of cotton in the USA from 1970 to 1995 Crop Sci 38 33 37
56. GA Van Esbroeck DT Bowman OL May DS Calhoun 1999 Genetic similarity indices for ancestral cotton cultivars and their impact on genetic diversity estimates of modern cultivars Crop Sci 39 323 328
57. ® 3.0, Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, the Netherlands
58. JW Van Ooijen 1999 LOD significance thresholds for QTL analysis in experimental populations of diploid species Heredity 83 613 624
59. ® 5, Software for the mapping of quantitative trait loci in experimental populations. Kyazma B.V., Wageningen, the Netherlands
60. RE Voorrips 2002 MapChart: Software for the graphical presentation of linkage maps and QTLs J Hered 93 77 78
61. BM Waddle CF Lewis TR Richmond 1961 The genetics of flowering response in cotton. III. Fruiting behavior of Gossypium hirsutum race latifolium in a cross with a variety of cultivated American Upland cotton Genetics 46 427 437
62. B Wang W Guo X Zhu Y Wu N Huang T Zhang 2006 QTL mapping of fiber quality in an elite hybrid derived-RIL population of upland cotton Euphytica 152 367 378
63. K Wang X Song Z Han W Guo J Yu J Sun J Pan R Kohel T Zhang 2006 Complete assignment of the chromosomes of Gossypium hirsutum L. by translocation and fluorescence in situ hybridization mapping Theor Appl Genet 113 73 80
64. M Yano Y Harushima Y Nagamura N Kurata Y Minobe T Sasaki 1997 Identification of quantitative trait loci controlling heading date in rice using a high-density linkage map Theor Appl Genet 99 1025 1032
65. M Zhong JC McCarty JN Jenkins S Saha 2002 Assessment of day-neutral backcross populations of cotton using AFLP markers J Cotton Sci 6 97 103