High performance computing for deformable image registration: Towards a new paradigm in adaptive radiotherapy

Medical Physics

Volumn 35, Issue 8, 2008, Pages 3546-3553

  Samant, Sanjiv S ^a   Xia, Junyi ^a   Muyan Öz̧elik, Pinar ^b   Owens, John D ^b  

^a UNIVERSITY OF FLORIDA   (United States)

^b University of California   (United States)

Author keywords

Deformable image registration; Demons; General purpose computation; GPGPU; GPU; Graphics processing unit; High performance computing

Indexed keywords

COMPUTATIONAL EFFICIENCY; COMPUTER GRAPHICS; COMPUTER GRAPHICS EQUIPMENT; COMPUTER PROGRAMMING LANGUAGES; DEFORMATION; IMAGE RECONSTRUCTION; IMAGE REGISTRATION; ITERATIVE METHODS; MEDICAL IMAGING; MULTICORE PROGRAMMING; MULTITASKING; PATIENT MONITORING; PIXELS; PROGRAM PROCESSORS; RADIOTHERAPY;

DEFORMABLE IMAGE REGISTRATION; DEMONS; GENERAL-PURPOSE COMPUTATIONS; GPGPU; HIGH PERFORMANCE COMPUTING;

GRAPHICS PROCESSING UNIT;

ADAPTIVE RADIATION; ALGORITHM; ARTICLE; COMPUTER ASSISTED TOMOGRAPHY; COMPUTER LANGUAGE; IMAGE RECONSTRUCTION; IMAGING SYSTEM; PRIORITY JOURNAL;

EID: 48349093945     PISSN: 00942405     EISSN: None     Source Type: Journal    
DOI: 10.1118/1.2948318     Document Type: Article

References (40)

1. E. D. Donnelly, P. J. Parikh, W. Lu, T. Zhao, K. Lechleiter, M. Nystrom, J. P. Hubenschmidt, D. A. Low, and J. D. Bradley, " Assessment of intrafraction mediastinal and hilar lymph node movement and comparison to lung tumor motion using four-dimensional CT.," Int. J. Radiat. Oncol., Biol., Phys. 69, 580-588 (2007).
2. D. W. Litzenberg, J. M. Balter, S. W. Hadley, H. M. Sandler, T. R. Willoughby, P. A. Kupelian, and L. Levine, " Influence of intrafraction motion on margins for prostate radiotherapy.," Int. J. Radiat. Oncol., Biol., Phys. 65, 548-553 (2006).
3. J. R. McClelland, J. M. Blackall, S. Tarte, A. C. Chandler, S. Hughes, S. Ahmad, D. B. Landau, and D. J. Hawkes, " A continuous 4D motion model from multiple respiratory cycles for use in lung radiotherapy.," Med. Phys. 33, 3348-3358 (2006).
4. J. Orban de Xivry, G. Janssens, G. Bosmans, M. De Craene, A. Dekker, J. Buijsen, A. van Baardwijk, D. De Ruysscher, B. Macq, and P. Lambin, " Tumour delineation and cumulative dose computation in radiotherapy based on deformable registration of respiratory correlated CT images of lung cancer patients.," Radiother. Oncol. 85 (2), 232-238 (2007).
5. E. Rietzel, G. T. Chen, N. C. Choi, and C. G. Willet, " Four-dimensional image-based treatment planning: Target volume segmentation and dose calculation in the presence of respiratory motion.," Int. J. Radiat. Oncol., Biol., Phys. 61, 1535-1550 (2005).
6. A. D. Vandermeer, H. Alasti, Y. B. Cho, and B. Norrlinger, " Investigation of the dosimetric effect of respiratory motion using four-dimensional weighted radiotherapy.," Phys. Med. Biol. 52, 4427-4448 (2007).
7. M. Xi, M. Z. Liu, X. W. Deng, L. Zhang, X. Y. Huang, H. Liu, Q. Q. Li, Y. H. Hu, L. Cai, and N. J. Cui, " Defining internal target volume (ITV) for hepatocellular carcinoma using four-dimensional CT.," Radiother. Oncol. 84, 272-278 (2007).
8. J.-P. Thirion, " Image matching as a diffusion process: An analogy with Maxwell's demons.," Med. Image Anal. 2, 243-260 (1998).
9. B. Fischer and J. Modersitzki, " Fast diffusion registration.," in AMS contemporary mathematics, inverse problems, image analysis, and medical imaging, 313, 117-129 (2002).
10. W. Lu, M. L. Chen, G. H. Olivera, K. J. Ruchala, and T. R. Mackie, " Fast free-form deformable registration via calculus of variations.," Phys. Med. Biol. 49, 3067-3087 (2004).
11. H. Wang, L. Dong, J. O'Daniel, R. Mohan, A. S. Garden, K. K. Ang, D. A. Kuban, M. Bonnen, J. Y. Chang, and R. Cheung, " Validation of an accelerated "demons" algorithm for deformable image registration in radiation therapy.," Phys. Med. Biol. 50, 2887-2905 (2005).
12. J. Xia, Y. Chen, and S. Samant, " The "Juggler" algorithm: A hybrid deformable image registration algorithm for adaptive radiotherapy.," Proc. SPIE 6510, 65105J (2007).
13. W. Lu, G. H. Olivera, Q. Chen, M. L. Chen, and K. J. Ruchala, " Automatic re-contouring in 4D radiotherapy.," Phys. Med. Biol. 51, 1077-1099 (2006).
14. K. S. Chao, S. Bhide, H. Chen, J. Asper, S. Bush, G. Franklin, V. Kavadi, V. Liengswangwong, W. Gordon, A. Raben, J. Strasser, C. Koprowski, S. Frank, G. Chronowski, A. Ahamad, R. Malyapa, L. Zhang, and L. Dong, " Reduce in variation and improve efficiency of target volume delineation by a computer-assisted system using a deformable image registration approach.," Int. J. Radiat. Oncol., Biol., Phys. 68, 1512-1521 (2007).
15. P. J. Keall, S. Joshi, S. S. Vedam, J. V. Siebers, V. R. Kini, and R. Mohan, " Four-dimensional radiotherapy planning for DMLC-based respiratory motion tracking.," Med. Phys. 32, 942-951 (2005).
16. T. Li, E. Schreibmann, Y. Yang, and L. Xing, " Motion correction for improved target localization with on-board cone-beam computed tomography.," Phys. Med. Biol. 51, 253-267 (2006).
17. G. J. Klein and R. H. Huesman, " Elastic material model mismatch effects in deformable motion estimation.," IEEE Trans. Nucl. Sci. 47, 1000-1005 (2000).
18. B. A. Mair, D. R. Gilland, and Sun Jing, " Estimation of images and nonrigid deformations in gated emission CT.," IEEE Trans. Med. Imaging 25, 1130-1144 (2006).
19. J. R. van Sornsen de Koste, J. P. Cuijpers, F. G. de Geest, F. J. Lagerwaard, B. J. Slotman, and S. Senan, " Verifying 4D gated radiotherapy using time-integrated electronic portal imaging: A phantom and clinical study.," Radiother. Oncol. 2, 32 (2007).
20. M. von Siebenthal, G. Szekely, A. J. Lomax, and P. C. Cattin, " Systematic errors in respiratory gating due to intrafraction deformations of the liver.," Med. Phys. 34, 3620-3629 (2007).
21. O. Bockenbach, M. Knaup, and M. Kachelriess, " Implementation of a cone-beam backprojection algorithm on the Cell Broadband Engine processor.," Proc. SPIE 6510, 651056 (2007).
22. C. R. Castro-Pareja, J. M. Jagadeesh, and R. Shekhar, " FPGA-based acceleration of mutual information calculation for real-time 3D image registration.," Proc. SPIE 5297, 212-219 (2004).
23. J. Li, C. Papachristou, and R. Shekhar, " Accelerating mutual information-based 3D medical image registration with an FPGA computing platform.," in ACM/SIGDA International Symposium on Field Programmable Gate Arrays-FPGA (2005), p. 279.
24. O. Dandekar, V. Walimbe, and R. Shekhar, " Hardware implementation of hierarchical volume subdivision-based elastic registration.," in Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society (IEEE Cat. No. 06CH37748) (2006).
25. J. D. Owens, D. Luebke, N. Govindaraju, M. Harris, J. Kruger, A. E. Lefohn, and T. J. Purcell, " A survey of general-purpose computation on graphics hardware.," Comput. Graph. Forum 26, 80-113 (2007).
26. R. Strzodka, M. Droske, and M. Rumpf, " Image registration by a regularized gradient flow. A streaming implementation in DX9 graphics hardware.," Computing (Vienna/New York) 73, 373-389 (2004).
27. N. Courty and P. Hellier, presented at the 8th International Conference on Medical Image Computing and Computer-Assisted Intervention, Palm Springs, 2005.
28. G. C. Sharp, N. Kandasamy, H. Singh, and M. Folkert, " GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration.," Phys. Med. Biol. 52, 5771-5783 (2007).
29. NVIDIA Corp., " NVIDIA GeForce 8800 GPU Architecture Overview.," Technical Brief (2006).
30. AMD Inc., " http://ati.amd.com/products/RadeonX1800/specs.html, " (2007).
31. J. D. Owens, D. Lubebke, N. Govindaraja, M. J. Harris, J. Kruger, A. E. Lefohn, and T. J. Purcell, presented at the Eurographics, State of the Art Reports, 2005.
32. D. Goddeke, R. Strzodka, and S. Turek, " Accelerating double precision FEM simulation with GPUs.," in Proceedings of ASIM 2005-18th Symposium on Simulation Technique, 2005.
33. M. Woo and OpenGL Architecture Review Board., OpenGL Programming Guide: The Official Guide to Learning OpenGL, version 1.2, 3rd ed. (Addison-Wesley, Reading, MA, 1999).
34. J. Sanchez and M. P. Canton, DirectX 3D Graphics Programming Bible (IDG Books Worldwide, Foster City, CA, 2000).
35. R. Fernando and M. J. Kilgard, The Cg tutorial: The Definitive Guide to Programmable Real-Time Graphics (Addison-Wesley, Boston, Mass., 2003).
36. P. Walsh, Advanced Visual Effects with Direct 3D (Thomson Course Technology, Boston, MA, 2006).
37. NVIDIA Corp., " http://developer.nvidia.com/object/cuda.html " (2007).
38. AMD Inc., " http://ati.amd.com/companyinfo/researcher/documents/ ATI_CTM_Guide.pdf " (2006).
39. I. Buck, T. Foley, D. Horn, J. Sugerman, K. Fatahalian, M. Houston, and P. Hanrahan, " Brook for GPUs: Stream computing on graphics hardware.," ACM Trans. Graphics 23, 777-786 (2004).
40. Intel Corp., http://www.intel.com/performance/server/xeon/hpcapp.htm