Phylogenetic analysis of long-chain hydrocarbon-degrading bacteria and evaluation of their hydrocarbon-degradation by the 2,6-DCPIP assay

Biodegradation

Volumn 19, Issue 5, 2008, Pages 749-757

  Kubota, Kenzo ^a   Koma, Daisuke ^a   Matsumiya, Yoshiki ^a   Chung, Seon Yong ^b   Kubo, Motoki ^a  

^a RITSUMEIKAN UNIVERSITY   (Japan)

^b Chonnam National University   (South Korea)

Author keywords

2,6 DCPIP assay; Car engine oil; Cyclic alkane; Hydrocarbon degradation; Long chain hydrocarbon

Indexed keywords

BACTERIOLOGY; DEGRADATION; ENERGY CONVERSION; ORGANIC COMPOUNDS; PARAFFINS; PHENOLS; SULFATE MINERALS;

16S RDNA; ACINETOBACTER; BASE OILS; BUSINESS MEDIA; CAR ENGINES; CYCLIC ALKANES; DEGRADING BACTERIA; DICHLOROPHENOL; ENERGY SOURCING; GORDONIA; LONG-CHAIN HYDROCARBONS; N ALKANES; NATURAL ENVIRONMENTS; NORMAL ALKANES; PHYLOGENETIC ANALYSIS; PHYLOGENETIC TREES; RALSTONIA; RHODOCOCCUS; SOLE CARBON;

HYDROCARBONS;

2,6 DICHLOROPHENOLINDOPHENOL; HYDROCARBON; PRIMER DNA;

BACTERIUM; BIOASSAY; BIODEGRADATION; HYDROCARBON; PHYLOGENY;

ARTICLE; BACTERIUM; CHEMISTRY; CLASSIFICATION; METABOLISM; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; SPECIES DIFFERENCE;

2,6-DICHLOROINDOPHENOL; BACTERIA; BASE SEQUENCE; DNA PRIMERS; HYDROCARBONS; PHYLOGENY; POLYMERASE CHAIN REACTION; SPECIES SPECIFICITY;

ACINETOBACTER; ALCALIGENACEAE; BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); PSEUDOMONAS; RALSTONIA; RHODOCOCCUS;

EID: 48349093501     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-008-9179-1     Document Type: Article

References (36)

1. J Aislabie DJ Saul JM Foght 2006 Bioremediation of hydrocarbon- contaminated polar soils Extremophiles 10 171 179
2. M Arenskötter D Baumeister MM Berekka G Potter RM Kroppenstedt A Linos A Steinbuchel 2001 Taxonomic characterization of two rubber degrading bacteria belonging to the species Gordonia polyisoprenivorans and analysis of hyper variable regions of 16S rDNA sequenced FEMS Microbiol Lett 205 277 282
3. Asperger O, Singh HD (1991) The biology of Acinetobacter. Plenum Press, New York, pp 323-350
4. M Dua AK Johri A Singh N Sethunathan 2002 Biotechnology and bioremediation: successes and limitations Appl Microbiol Biotechnol 59 143 152
5. KG Hanson JD Desai AJ Desai 1993 A rapid and simple screening technique for potential crude oil degrading microorganisms Biotechnol Tech 7 745 748
6. T Iwamoto M Nasu 2001 Current bioremediation practice and perspective J Biosci Bioeng 92 1 8
7. SH Ko JM Lebeault 1999 Effect of a mixed culture on co-oxidation during the degradation of saturated hydrocarbon mixture J Appl Microbiol 87 72 79
8. D Koma F Hasumi E Yamamoto T Ohta SY Chung M Kubo 2001 Biodegradation of long-chain n-paraffines from waste oil of car engine by Acinetobacter sp. J Biosci Bioeng 91 94 96
9. D Koma F Hasumi SY Chung M Kubo 2003 Biodegradation of n-alkylcyclohexanes by co-oxidation via multiple pathways in Acinetobacter sp. ODDK71 J Biosci Bioeng 95 641 644
10. D Koma Y Sakashita K Kubota Y Fujii F Hasumi SY Chung M Kubo 2003 Degradation of car engine base oil by Rhodococcus sp. NDKK48 and Gordonia sp. NDKY76A Biosci Biochem Bioeng 67 1590 1593
11. D Koma Y Sakashita K Kubota Y Fujii F Hasumi SY Chung M Kubo 2005 Degradation pathways of cyclic alkanes in Rhodococcus sp. NDKK48 Appl Microbiol Biotechnol 67 1590 1593
12. S Komukai-Nakamura K Sugiura Y Yamauchi-Inomata H Toki K Venkateswaran S Yamamoto H Tanaka S Harayama 1996 Construction of bacterial consortia that degrade Arabian light crude oil J Ferment Bioeng 82 570 574
13. Konishi S, Ueda R (1992) Junkatsuyu no kiso to ouyou (in Japanese). Corona Publishing, Tokyo, pp 27-35
14. A Korda P Santas A Tenente R Santas 1997 Petroleum hydrocarbon bioremediation: sampling and analytical techniques, in situ treatments and commercial microorganisms currently used Appl Microbiol Biotechnol 48 677 686
15. K Kostichka SM Thomas KJ Gibson V Nagarajan Q Cheng 2001 Cloning and characterization of a gene cluster for cyclododecanone oxidation in Rhodococcus ruber SC1 J Bacteriol 183 6478 6486
16. C Kummer P Schumann E Stackebrandt 1999 Gordonia alkanivorans sp. nov., isolated from tar-contaminated soil Int J Syst Bacteriol 118 394 399
17. B Lal S Khanna 1996 Degradation of crude oil by Acinetobacter calcoaceticus and Alcaligenes odorans J Appl Bacteriol 81 355 362
18. AA Lappas D Patiaka D Ikonomou A Vasalos 1997 Separation and characterization of paraffins and naphthenes from FCC feedstocks Ind Eng Chem Res 36 3110 3115
19. Matsumiya Y, Kubo M (2007) Bioprocess handbook (in Japanese). NTS Publishing, Tokyo pp 638-652
20. JJ Perry 1979 Microbial cooxidations involving hydrocarbons Microbiol Rev 43 59 72
21. Perry JJ (1984) Microbial metabolism of cyclic alkanes. Atlas, R. M., New York, pp 61-98
22. PH Pritchard IJG Mueller JC Rogers FV Kremer JA Glaser 1992 Oil spill bioremediation: experiences, lessons and results from the Exxon Valdez oil spill in Alaska Biodegradation 3 315 335
23. H Rehm I Reiff 1981 Mechanism and occurrence of microbial oxidation of long chain alkanes Adv Biochem Eng 19 175 215
24. 44) by an isolate, Acinetobacter sp. M-1 Biosci Biotechnol Biochem 58 2128 2130
25. S Sanpa S Sumiyoshi T Kujira Y Matsumiya M Kubo 2006 Isolation and characterization of a Bluegill-degrading microorganism, and analysis of the root hair-promoting effect of the degraded products Biosci Biotechnol Biochem 70 340 347
26. JD Schumacher RM Fakoussa 1999 Degradation of alicyclic molecules by Rhodococcus ruber CD4 Appl Microbiol Biotechnol 52 85 90
27. JL Stroud GI Paton KT Semple 2007 Microbe-aliphatic hydrocarbon interactions in soil: implications for biodegradation and bioremediation J Appl Microbiol 102 1239 1253
28. M Throne-Holst A Wentzel TE Ellingsen H-K Kotlar SB Zotchev 2007 Identification of novel genes involved in long-chain n-alkane degradation by Acinetobacter sp. strain DSM 17874 Appl Environ Microbiol 73 3327 3332
29. JB van Beilen THM Smits LG Whyte S Schorcht M Röthlisberger T Plaggemeier KH Engesser B Witholt 2002 Alkane hydroxylases homologues in Gram-positive strains. Environ Microbiol 4 676 682
30. JB van Beilen Z Li WA Duetz B Witholt 2003 Diversity of alkane hydroxylase systems in the environment Oil Gas Sci Technol 58 427 440
31. JB van Beilen EG Funhoff 2007 Alkane hydroxylases involved in microbial alkane degradation Appl Microbiol Biotechnol 74 13 21
32. JD van Hamme JA Odumeru OP Ward 2000 Community dynamics of a mixed-bacterial culture growing on petroleum hydrocarbons in batch culture Can J Microbiol 46 441 450
33. M Vidali 2001 Bioremediation. A overview Pure Appl Chem 73 1163 1172
34. A Vomberg U Klinner 2000 Distribution of alkB genes within n-alkane-degrading bacteria J Appl Microbiol 89 339 348
35. LG Whyte J Hawari E Zhou L Bourbonniére W Inniss CW Greer 1998 Biodegradation of variable-chain-length alkanes at low temperatures by a psychrotrophic Rhodococcus sp. Appl Environ Microbiol 64 2578 2584
36. LG Whyte THM Smits D Labbe B Witholt CW Greer JB van Beilen 2002 Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531 Appl Environ Microbiol 68 5933 5942