메뉴 건너뛰기




Volumn 19, Issue 8, 2008, Pages 1147-1155

Sequence Verification of Oligonucleotides Containing Multiple Arylamine Modifications by Enzymatic Digestion and Liquid Chromatography Mass Spectrometry (LC/MS)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATOGRAPHIC ANALYSIS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; LIQUID CHROMATOGRAPHY; MASS SPECTROMETERS; MASS SPECTROMETRY; NUCLEIC ACIDS; OLIGONUCLEOTIDES; SPECTROMETERS; SPECTROMETRY; SPECTRUM ANALYSIS; SULFUR COMPOUNDS;

EID: 48349085387     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2008.04.034     Document Type: Article
Times cited : (12)

References (24)
  • 1
    • 0035957238 scopus 로고    scopus 로고
    • Influence of Flanking Sequence Context on the Mutagenicity of Acetylaminofluorene-Derived DNA adducts in Mammalian Cells
    • Shibutani S., Suzuki N., Tan X., Johnson F., and Grollman A.P. Influence of Flanking Sequence Context on the Mutagenicity of Acetylaminofluorene-Derived DNA adducts in Mammalian Cells. Biochemistry 40 (2001) 3717-3722
    • (2001) Biochemistry , vol.40 , pp. 3717-3722
    • Shibutani, S.1    Suzuki, N.2    Tan, X.3    Johnson, F.4    Grollman, A.P.5
  • 2
    • 0034131114 scopus 로고    scopus 로고
    • Nucleic Acid Sequence and Repair: Role of Adduct, Neighbor Bases and Enzyme Specificity
    • Singer B., and Hang B. Nucleic Acid Sequence and Repair: Role of Adduct, Neighbor Bases and Enzyme Specificity. Carcinogenesis 21 (2000) 1071-1078
    • (2000) Carcinogenesis , vol.21 , pp. 1071-1078
    • Singer, B.1    Hang, B.2
  • 3
    • 0242318377 scopus 로고    scopus 로고
    • Effects of DNA Adduct Structure and Sequence Context on Strand Opening of Repair Intermediates and Incision by UvrABC Nuclease
    • Zou Y., Shell S.M., Utzat C.D., Luo C., Yang Z., Geacintov N.E., and Basu A.K. Effects of DNA Adduct Structure and Sequence Context on Strand Opening of Repair Intermediates and Incision by UvrABC Nuclease. Biochemistry 42 (2003) 12654-12661
    • (2003) Biochemistry , vol.42 , pp. 12654-12661
    • Zou, Y.1    Shell, S.M.2    Utzat, C.D.3    Luo, C.4    Yang, Z.5    Geacintov, N.E.6    Basu, A.K.7
  • 4
    • 35048822835 scopus 로고    scopus 로고
    • Spectroscopic and Theoretical Insights into Sequence Effects of Aminofluorene-Induced Conformational Heterogeneity and Nucleotide Excision Repair
    • Meneni S.R., Shell S.M., Gao L., Jurecka P., Wang L., Sponer J., Zou Y., Chiarelli M.P., and Cho B.P. Spectroscopic and Theoretical Insights into Sequence Effects of Aminofluorene-Induced Conformational Heterogeneity and Nucleotide Excision Repair. Biochemistry 46 (2007) 11263-11278
    • (2007) Biochemistry , vol.46 , pp. 11263-11278
    • Meneni, S.R.1    Shell, S.M.2    Gao, L.3    Jurecka, P.4    Wang, L.5    Sponer, J.6    Zou, Y.7    Chiarelli, M.P.8    Cho, B.P.9
  • 5
    • 0000037422 scopus 로고
    • Metabolic Activation and DNA Adducts of Aromatic Amines and Nitroaromatic Hydrocarbons
    • Cooper C.S., and Grover P.L. (Eds), Springer-Verlag, Heidelberg
    • Beland F.A., and Kadlubar F.F. Metabolic Activation and DNA Adducts of Aromatic Amines and Nitroaromatic Hydrocarbons. In: Cooper C.S., and Grover P.L. (Eds). Handbook of Experimental Pharmacology (1990), Springer-Verlag, Heidelberg 267-325
    • (1990) Handbook of Experimental Pharmacology , pp. 267-325
    • Beland, F.A.1    Kadlubar, F.F.2
  • 6
    • 0029361211 scopus 로고
    • Analysis of Modified Oligonucleotides by Matrix-Assisted Laser Desorption/Ionization Fourier Transform Mass Spectrometry
    • Stemmler E.A., Buchanan M.V., Hurst G.B., and Hettich R.L. Analysis of Modified Oligonucleotides by Matrix-Assisted Laser Desorption/Ionization Fourier Transform Mass Spectrometry. Anal. Chem. 67 (1995) 2924-2930
    • (1995) Anal. Chem. , vol.67 , pp. 2924-2930
    • Stemmler, E.A.1    Buchanan, M.V.2    Hurst, G.B.3    Hettich, R.L.4
  • 7
    • 0031957491 scopus 로고    scopus 로고
    • Tandem Mass Spectrometry Studies of a Carcinogen Modified Oligodeoxynucleotide
    • Glover R.P., Lamb J.H., and Farmer P.B. Tandem Mass Spectrometry Studies of a Carcinogen Modified Oligodeoxynucleotide. Rapid Commun. Mass Spectrom. 12 (1998) 368-372
    • (1998) Rapid Commun. Mass Spectrom. , vol.12 , pp. 368-372
    • Glover, R.P.1    Lamb, J.H.2    Farmer, P.B.3
  • 8
    • 9144255570 scopus 로고    scopus 로고
    • Analysis of DNA Methylation by Tandem Ion-Pair Reversed-Phase High-Performance Liquid Chromatography/Electrospray Ionization Mass Spectrometry
    • Chen H., Zhang W., Song R., Ma H., Dong Y., Sheng G., Zhou Z., and Fu J. Analysis of DNA Methylation by Tandem Ion-Pair Reversed-Phase High-Performance Liquid Chromatography/Electrospray Ionization Mass Spectrometry. Rapid Commun. Mass Spectrom. 18 (2004) 2773-2778
    • (2004) Rapid Commun. Mass Spectrom. , vol.18 , pp. 2773-2778
    • Chen, H.1    Zhang, W.2    Song, R.3    Ma, H.4    Dong, Y.5    Sheng, G.6    Zhou, Z.7    Fu, J.8
  • 9
    • 0027240210 scopus 로고
    • Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry: A Powerful Tool for the Mass and Sequence Analysis of Natural and Modified Oligonucleotides
    • Pieles U., Zurcher W., Schar M., and Moser H.E. Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry: A Powerful Tool for the Mass and Sequence Analysis of Natural and Modified Oligonucleotides. Nucleic Acids Res. 21 (1993) 3191-3196
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3191-3196
    • Pieles, U.1    Zurcher, W.2    Schar, M.3    Moser, H.E.4
  • 10
    • 0345830965 scopus 로고    scopus 로고
    • Structural Characterization of Carcinogen-Modified Oligodeoxynucleotide Adducts Using Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry
    • Brown K., Harvey C.A., Turteltaub K.W., and Shields S.J. Structural Characterization of Carcinogen-Modified Oligodeoxynucleotide Adducts Using Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry. J. Mass Spectrom. 38 (2003) 68-79
    • (2003) J. Mass Spectrom. , vol.38 , pp. 68-79
    • Brown, K.1    Harvey, C.A.2    Turteltaub, K.W.3    Shields, S.J.4
  • 11
    • 0033557286 scopus 로고    scopus 로고
    • Synthesis and Enzymatic Processing of Oligodeoxynucleotides Containing Tandem Base Damage
    • Bourdat A.G., Gasparutto D., and Cadet J. Synthesis and Enzymatic Processing of Oligodeoxynucleotides Containing Tandem Base Damage. Nucleic Acids Res. 27 (1999) 1015-1024
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1015-1024
    • Bourdat, A.G.1    Gasparutto, D.2    Cadet, J.3
  • 12
    • 0034479093 scopus 로고    scopus 로고
    • Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Methods for Oligodeoxynucleotides: Improvements in Matrix, Detection Limits, Quantification, and Sequencing
    • Zhang L.-K., and Gross M.L. Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Methods for Oligodeoxynucleotides: Improvements in Matrix, Detection Limits, Quantification, and Sequencing. J. Am. Soc. Mass Spectrom. 11 (2000) 854-865
    • (2000) J. Am. Soc. Mass Spectrom. , vol.11 , pp. 854-865
    • Zhang, L.-K.1    Gross, M.L.2
  • 13
    • 0035561118 scopus 로고    scopus 로고
    • Determination of Photomodified Oligodeoxynucleotides by Exonuclease Digestion, Matrix-assisted Laser Desorption/Ionization and Post-Source Decay Mass Spectrometry
    • Zhang L.-K., Ren Y., Rempel D., Taylor J.S., and Gross M.L. Determination of Photomodified Oligodeoxynucleotides by Exonuclease Digestion, Matrix-assisted Laser Desorption/Ionization and Post-Source Decay Mass Spectrometry. J. Am. Soc. Mass Spectrom. 12 (2001) 1127-1135
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 1127-1135
    • Zhang, L.-K.1    Ren, Y.2    Rempel, D.3    Taylor, J.S.4    Gross, M.L.5
  • 14
    • 0346159011 scopus 로고    scopus 로고
    • Enzymatic Strategies for the Characterization of Nucleic acids by Electrospray Ionization Mass Spectrometry
    • Null A.P., Benson L.M., and Muddiman D.C. Enzymatic Strategies for the Characterization of Nucleic acids by Electrospray Ionization Mass Spectrometry. Rapid Commun. Mass Spectrom. 17 (2003) 2699-2706
    • (2003) Rapid Commun. Mass Spectrom. , vol.17 , pp. 2699-2706
    • Null, A.P.1    Benson, L.M.2    Muddiman, D.C.3
  • 15
    • 0034956512 scopus 로고    scopus 로고
    • Factors Determining the Performance of Triple Quadrupole, Quadrupole Ion Trap and Sector Field Mass Spectrometer in Electrospray Ionization Mass Spectrometry. II. Suitability for de Novo Sequencing
    • Premstaller A., and Huber C.G. Factors Determining the Performance of Triple Quadrupole, Quadrupole Ion Trap and Sector Field Mass Spectrometer in Electrospray Ionization Mass Spectrometry. II. Suitability for de Novo Sequencing. Rapid Commun. Mass Spectrom. 15 (2001) 1053-1060
    • (2001) Rapid Commun. Mass Spectrom. , vol.15 , pp. 1053-1060
    • Premstaller, A.1    Huber, C.G.2
  • 16
    • 0029188041 scopus 로고
    • Sequencing of Oligonucleotides Using High Performance Liquid Chromatography and Electrospray Mass Spectrometry
    • Glover R.P., Sweetman G.M., Farmer P.B., and Roberts G.C. Sequencing of Oligonucleotides Using High Performance Liquid Chromatography and Electrospray Mass Spectrometry. Rapid Commun. Mass Spectrom. 9 (1995) 897-901
    • (1995) Rapid Commun. Mass Spectrom. , vol.9 , pp. 897-901
    • Glover, R.P.1    Sweetman, G.M.2    Farmer, P.B.3    Roberts, G.C.4
  • 17
    • 0034544496 scopus 로고    scopus 로고
    • Sequencing Oligonucleotides with Blocked Termini Using Exonuclease Digestion and Electrospray Mass Spectrometry
    • Wu H., and Aboleneen H. Sequencing Oligonucleotides with Blocked Termini Using Exonuclease Digestion and Electrospray Mass Spectrometry. Anal. Biochem. 287 (2000) 126-135
    • (2000) Anal. Biochem. , vol.287 , pp. 126-135
    • Wu, H.1    Aboleneen, H.2
  • 18
    • 0035545158 scopus 로고    scopus 로고
    • Analysis of Nucleic Acids by On-line Liquid Chromatography-Mass Spectrometry
    • Huber C.G., and Oberacher H. Analysis of Nucleic Acids by On-line Liquid Chromatography-Mass Spectrometry. Mass Spectrom. Rev. 20 (2001) 310-343
    • (2001) Mass Spectrom. Rev. , vol.20 , pp. 310-343
    • Huber, C.G.1    Oberacher, H.2
  • 19
    • 0039547559 scopus 로고
    • Single Adduct Mutagenesis: Strong Effect of the Position of a Single Acetylaminofluorene Adduct within a Mutation Hot Spot
    • Burnouf D., Koehl P., and Fuchs R.P.P. Single Adduct Mutagenesis: Strong Effect of the Position of a Single Acetylaminofluorene Adduct within a Mutation Hot Spot. Proc. Natl. Acad. Sci. U.S.A. 86 (1989) 4147-4151
    • (1989) Proc. Natl. Acad. Sci. U.S.A. , vol.86 , pp. 4147-4151
    • Burnouf, D.1    Koehl, P.2    Fuchs, R.P.P.3
  • 20
    • 0027975141 scopus 로고
    • Mutations Induced by Aromatic Amine DNA Adducts in pBR322
    • Melchior Jr. W.B., Marques M.M., and Beland F.A. Mutations Induced by Aromatic Amine DNA Adducts in pBR322. Carcinogenesis 15 (1994) 889-899
    • (1994) Carcinogenesis , vol.15 , pp. 889-899
    • Melchior Jr., W.B.1    Marques, M.M.2    Beland, F.A.3
  • 21
    • 0024828173 scopus 로고
    • Strong Structural Effect of the Position of a Single Acetylaminofluorene Adduct Within a Mutation Hot Spot
    • Koehl P., Valladier P., Le Fevre J.-F., and Fuchs R.P.P. Strong Structural Effect of the Position of a Single Acetylaminofluorene Adduct Within a Mutation Hot Spot. Nucleic Acids Res. 17 (1989) 9531-9541
    • (1989) Nucleic Acids Res. , vol.17 , pp. 9531-9541
    • Koehl, P.1    Valladier, P.2    Le Fevre, J.-F.3    Fuchs, R.P.P.4
  • 23
    • 0000529864 scopus 로고
    • Decompositions of Multiply-Charged Oligonucleotide Anions
    • McLuckey S.A., and Habibigoudarzi S. Decompositions of Multiply-Charged Oligonucleotide Anions. J. Am. Chem. Soc. 115 (1993) 12085-12095
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 12085-12095
    • McLuckey, S.A.1    Habibigoudarzi, S.2
  • 24
    • 32644440758 scopus 로고    scopus 로고
    • Sequence Effects of Aminofluorene-Modified DNA Duplexes: Thermodynamic and Circular Dichroism Properties
    • Meneni S.R., D'Mello R.N., Baker G., Gao L., Chiarelli M.P., and Cho B.P. Sequence Effects of Aminofluorene-Modified DNA Duplexes: Thermodynamic and Circular Dichroism Properties. Nucleic Acids Res. 34 (2006) 755-763
    • (2006) Nucleic Acids Res. , vol.34 , pp. 755-763
    • Meneni, S.R.1    D'Mello, R.N.2    Baker, G.3    Gao, L.4    Chiarelli, M.P.5    Cho, B.P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.