Pythium recalcitrans sp. nov. revealed by multigene phylogenetic analysis

Mycologia

Volumn 100, Issue 2, 2008, Pages 310-319

  Moralejo, Eduardo ^a   Clemente, Antonio ^a   Descals, Enrique ^a   Belbahri, Lassaad ^b   Calmin, Gautier ^b   Lefort, François ^b   Spies, Chris F J ^c   McLeod, Adele ^c  

^a INSTITUTO MEDITERRÁNEO DE ESTUDIOS AVANZADOS   (Spain)

^b UNIVERSITY OF APPLIED SCIENCES WESTERN SWITZERLAND   (Switzerland)

^c STELLENBOSCH UNIVERSITY   (South Africa)

Author keywords

tubulin; tubulin; Actin; cox I and II; ITS rDNA; nadh I; Oomycetes; Plant pathogen; Pythium phylogeny

Indexed keywords

FUNGUS; GENETIC ANALYSIS; GROWTH; MORPHOLOGY; NEW SPECIES; PATHOGEN; PHYLOGENY; SUGAR BEET; TAXONOMY; VINE;

AFRICA; BALEARIC ISLANDS; EURASIA; EUROPE; MAJORCA; MEDITERRANEAN SEA; SOUTH AFRICA; SOUTHERN AFRICA; SOUTHERN EUROPE; SPAIN; SUB-SAHARAN AFRICA;

BETA VULGARIS; BETA VULGARIS SUBSP. VULGARIS; LYCOPERSICON ESCULENTUM; OOMYCETES; PYTHIUM; PYTHIUM INTERMEDIUM; PYTHIUM SYLVATICUM; SOLANUM; VITACEAE; VITIS; VITIS VINIFERA;

RIBOSOMAL SPACER DNA;

ARTICLE; CLASSIFICATION; CYTOLOGY; FUNGAL GENE; GENETICS; GRAPE; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PYTHIUM;

DNA, RIBOSOMAL SPACER; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PYTHIUM; VITIS;

EID: 48249093861     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/mycologia.100.2.310     Document Type: Article

References (44)

1. Allain-Boulé N, Tweddel R, Mazzola M, Belanger R, Lévesque CA. 2004. Pythium attrantheridium sp. nov. taxonomy and comparison with related species. Mycol Res 108:795-805.
2. Belbahri L, Calmin G, Pawlowski J, Lefort F. 2005. Phylogenetic analysis and real time PCR detection of a presumably undescribed Peronospora species on sweet basil and sage. Mycol Res 109:1302-1312.
3. -, -, Sanchez-Hernandez E, Oszako T, Lefort F. 2006a. Pythium sterilum sp. nov. isolated from Poland, Spain and France, its morphology and molecular phylogenetic position. FEMS Microbiol Lett 255:209-214.
4. -, Moralejo E, Calmin G, Oszako T, Garcia JA, Descals E, Lefort F. 2006b. Phytophthora polonica, a new species isolated from declining alder stands in Poland. FEMS Microbiol Lett 261:165-174.
5. Brasier CM. 1967. Physiology of reproduction in Phytophthora [Doctoral dissertation]. Hull, UK: University of Hull.
6. Briard M, Dutertre M, Rouxel F, Brygoo Y. 1995. Ribosomal RNA sequence divergence within the Pythiaceae. Mycol Res 99:1119-1127.
7. Bruns TD, White TJ, Taylor JW. 1991. Fungal molecular systematics. Ann Rev Ecol Sys 22:525-564.
8. Campbell WA, Hendrix FF. 1967. A new heterothallic Pythium from southern United States. Mycologia 59:274-278.
9. de Cock AWAM, Mendoza L, Padhye AA, Ajello L, Kaufman L. 1987. Pythium insidiosum sp. nov., the etiologic agent of pythiosis. J Clin Microbiol 25:344-349.
10. Dick MW. 1990. Keys to Pythium. Reading, UK: University of Reading, School of Plant Science, Department of Botany. 64 p.
11. -. 2001. Straminipilous fungi: systematics of the Peronosporomycetes including accounts of the marine straminipilous protists, the plasmodiophorids and similar organisms. Dordrecht: Kluver Academic Publishers.
12. Galtier N, Gouy M, Gautier C. 1996. SEAVIEW and PHYLO-WIN, two graphic tools for sequence alignment and molecular phylogeny. Comp Appl Biosci 12: 543-548.
13. Göker M, Voglmayr H, Riethmüller A, Oberwinkler F. 2007. How do obligate parasites evolve? A multi-gene phylogenetic analysis of downy mildews. Fung Genet Biol 44:105-122.
14. Harper JT, Waanders E, Keeling PJ. 2005. On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes. Int J System Evol Microbiol 55:487-496.
15. Hendrix FF, Campbell WA. 1973. Pythiums as plant pathogens. Ann Rev Phytop 11:77-98.
16. Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
17. Jeffers SN, Martin SB. 1986. Comparison of two media selective for Phytophthora and Pythium species. Plant Dis 70(11):1038-1043.
18. Kluge AG. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst Zool 38:7-25.
19. Kroon LPNM, Bakker FT, van den Bosch GBM, Bonants PJM, Flier WG. 2004. Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences. Fung Genet Biol 41:766-782.
20. Lanave C, Preparata G, Saccone C, Serio G. 1984. A new method for calculating evolutionary substitution rates. J Mol Evol 20:86-93.
21. Larget B, Simon DL. 1999. Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol Biol and Evol 16:750-759.
22. Lévesque CA, de Cock AWAM. 2004. Molecular phylogeny and taxonomy of the genus Pythium. Mycol Res 108: 1363-1383.
23. Lifshitz R, Stanghenellini ME, Baker R. 1984. A new species of Pythium isolated from soil in Colorado. Mycotaxon 20:373-379.
24. Martin F. 1995. Meiotic instability of Pythium sylvaticum as demonstrated by inheritance of the nuclear markers and karyotype analysis. Genetics 139:1233-1246.
25. -, Tooley PW. 2000. Phylogenetic relationships of some Pythium species inferred from sequence analysis of the mitochondrially encoded cytochrome oxidase I and II genes. Mycologia 92:711-727.
26. -, -. 2003. Phylogenetic relationships among Phytophthora species inferred from sequence analysis of the mitochondrially encoded cytochrome oxidase I and II genes. Mycologia 95(2):269-284.
27. Matthews VD. 1931. Studies on the genus Pythium. Chapel Hill: University of North Carolina Press. 136 p.
28. Matsumoto C, Kageyama K, Suga H, Hyakumachi M. 1999. Phylogenetic relationships of Pythium species based on ITS and 5.8S sequences of the ribosomal DNA. Mycoscience 40:321-331.
29. Mau B, Newton MA, Larget B. 1999. Bayesian phylogenetic inference via Markov chain Monte Carlo methods. Biometrics 55:1-12.
30. Middleton JT. 1943. The taxonomy, host range, and geographical distribution of the genus Pythium. Mem Torrey Bot Club 20:1-171.
31. Moralejo E, Puig M, Man in't Veld WA. 2004. First report of Phytophthora tentaculata on Verbena sp. in Spain. Plant Pathol 53:806.
32. Page RD. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-378.
33. Papa KE, Campbell WA, Hendrix FF Jr. 1967. Sexuality in Pythium sylvaticum: heterothallism. Mycologia 59:589-95.
34. Perrière G, Gouy M. 1996. WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78: 364-369.
35. Robertson GI. 1980. The genus Pythium in New Zealand. NZ J Bot 18:73-102.
36. Rodriguez F, Oliver JF, Martin A, Medina JR. 1990. The general stochastic model of nucleotide substitution. J Theor Biol 142:485-501.
37. Sansome E. 1961. Meiosis in the oogonium and antheridium of Pythium debaryanum Hesse. Nature 191:827- 828.
38. Shen QS. 2001. Molecular phylogenetic analysis of Grifola frondosa (Maitake) and related species and the influence of selected nutrient supplements on mushroom yield [Doctoral dissertation]. Pennsylvania State University Graduate School. 141 p.
39. Sikes DS, Lewis PO. 2001. PAUPRat: PAUP* implementation of the parsimony ratchet. Beta software, version 1. (Distributed by the Authors, Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, USA.)
40. van der Plaats-Niterink AJ. 1981. Monograph of the genus Pythium. Studies in Mycology 21. Baarn, Netherlands: Centraalbureau Voor Schimmelcultures.
41. Villa NO, Kageyama K, Asano T, Suga H. 2006. Phylogenetic relationships of Pythium and Phytophthora species based on ITS rDNA, cytochrome oxidase II and beta-tubulin gene sequences. Mycologia 98(3):410-422.
42. Waterhouse GM. 1967. Key to Pythium Pringsheim. Mycol Pap 109:1-15.
43. -. 1968. The genus Pythium: diagnoses (or descriptions) and figures from the original papers. Mycol Pap 110:1-50.
44. White TJ, Burns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sinsky JJ, White TJ, eds. PCR protocols: a guide to nethods and applications. San Diego: Academic Press. p 315-322.