Using macro-arrays to study routes of infection of Helicobacter pylori in three families

PLoS ONE

Volumn 3, Issue 5, 2008, Pages

  Raymond, Josette ^a   Thiberge, Jean Michel ^b   Kalach, Nicolas ^c   Bergeret, Michel ^a   Dupont, Christophe ^d   Labigne, Agnès ^b   Dauga, Catherine ^e  

^a UNIVERSITÉ PARIS DESCARTES   (France)

^b Unité de Pathogénie Bactérienne des Muqueuses   (France)

^c HÔPITAL SAINT ANTOINE   (France)

^d université Paris Cité   (France)

^e INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ABC TRANSPORTER; BACTERIAL DNA; BETA 4 GALACTOSYLTRANSFERASE; CHORISMATE SYNTHASE; CHORISMIC ACID; CITRATE SYNTHASE; DEOXYCYTIDINE TRIPHOSPHATE; DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE; DIACYLGLYCEROL KINASE; GALACTOSYLTRANSFERASE; GLYCEROL 3 PHOSPHATE DEHYDROGENASE; GLYCEROL 3 PHOSPHATE DEHYDROGENASE C; HEAT SHOCK PROTEIN; HEAT SHOCK PROTEIN A; HELICASE; METHIONINE ADENOSYLTRANSFERASE; METHYLTRANSFERASE; MULTIDRUG RESISTANCE PROTEIN; N ACETYLGALACTOSAMINYLTRANSFERASE; OUTER MEMBRANE PROTEIN; OUTER MEMBRANE PROTEIN 3; PHENYLALANINE TRANSFER RNA LIGASE; PHENYLALANINE TRANSFER RNA LIGASE BETA; RESTRICTION ENDONUCLEASE; SITE SPECIFIC DNA METHYLTRANSFERASE (ADENINE SPECIFIC); SITE SPECIFIC DNA METHYLTRANSFERASE (CYTOSINE SPECIFIC); TRANSPOSASE; TRANSPOSASE A; TRANSPOSASE B;

ALLELE; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL TRANSMISSION; BACTERIUM ISOLATION; CLADISTICS; FAMILY STUDY; FRANCE; GENE CLUSTER; GENE EXPRESSION PROFILING; GENE INSERTION; GENETIC VARIABILITY; HELICOBACTER INFECTION; HELICOBACTER PYLORI; HOUSEKEEPING GENE; MOLECULAR PHYLOGENY; PARSIMONY ANALYSIS; POINT MUTATION; PROTEIN FUNCTION; SEQUENCE ANALYSIS; STOMACH ANTRUM; STRAIN DIFFERENCE; BACTERIAL GENE; CLASSIFICATION; DISEASE TRANSMISSION; FAMILY; FEMALE; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MALE; SPECIES DIFFERENCE;

HELICOBACTER PYLORI;

DISEASE TRANSMISSION, HORIZONTAL; FAMILY; FEMALE; GENES, BACTERIAL; HELICOBACTER INFECTIONS; HELICOBACTER PYLORI; HUMANS; MALE; SPECIES SPECIFICITY;

EID: 48249085337     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0002259     Document Type: Article

References (40)

1. Ernst PB, Gold BD (2000) The disease spectrum, of Helicobacter pylori: the immunopathogenesis of gastroduodenal ulcer and gastric cancer. Ann Rev Microbiol 54: 615-640.
2. Blaser MJ, Perez-Perez GI, Kleanthous H 1995 Infection with Helicobacter pylori strains possessing cagA associated with an increased risk of developing adenocarcinoma of the stomach. Cancer Res 55: 2111-2115.
3. Parsonnet J, Hansen S, Rodriguez L, Gelb AB, Warnke RA, et al. (1994) Helicobacter pylori infection and gastric lymphoma. N Engl J Med 330: 1267-1271.
4. Drumm B, Perez-Perez GI, Blaser MJ, Sherman PM (1990) Intrafamilial clustering of Helicobacter pylori infection. New Engl J Med 322: 359-363.
5. Rothenbacher D, Bode G, Berg G, Knayer U, Gonser T, et al. (1999) H., Helicobacter pylori among preschool children and their parents: evidence of parent-child transmission. J infect Dis 17: 398-402.
6. Tindberg Y (2001) Infection in Swedish school children: lack of evidence of child-to-child transmission outside the family. Gastroenterol 121: 310-316.
7. Goodman K, Correa P (2000) Transmission of Helicobacter pylori among siblings. Lancet 355: 358-362.
8. Nwokolo CU, Bickley J, Attard AR, Owen RJ, Costas M, et al. (1992) Evidence of clonal variants of Helicobacter pylori in three generations of a duodenal ulcer disease family. Gut 33: 1323-1327.
9. Georgopoulos SD, Mentis AF, Spiliadis CA, Tzouvelekis LS, Tzlelepi E, et al. (1996) Helicobacter pylori infection in spouses of patients with duodenal ulcers and comparison of ribosomal RNA gene patterns. Gut 39: 634-638.
10. Kivi M, Tindberg Y, Sörberg M, Casswall TH, Befrits R, et al. (2003) Concordance of Helicobacter pylori strains within families. J Clin Microbiol 41: 5604-5608.
11. Han SR, Zschausch HC, Meyer HGW, Schneider T, Loos M, at al (2000) Helicobacter pylori: clonal population structure and restricted transmission within families revealed by molecular typing. J Clin Microbiol 38: 3646-3651.
12. Suerbaum S, Smith JM, Bapumia K, Morelli G, Smith NH, et al. (1998) Free recombination within Helicobacter pylori. Proc Natl Acad Sci USA 95: 12619-12624.
13. Owen RJ, Xerry J (2003) Tracing clonality of Helicobacter pylori infecting family members from analysis of DNA sequences of three housekeeping genes (ureI, atpA and ahpC), deduced amino acid sequences, and pathogenicity-associated markers (cagA and vacA). J Med Microbiol 52: 515-524.
14. Marshall DG, Dundon WG, Beesley SM, Smyth CJ (1998) Helicobacter pylori - a conundrum of genetic diversity. Microbiol UK 144: 2925-2939.
15. Achtman M, Azuma T, Berg DE, Ito Y, Morelli Z, et al. (1999) Recombination and clonal groupings within Helicobacter pylori from different geographical regions. Mol Microbiol 32: 459-470.
16. Maggi Solca N, Bernasconi MV, Valsangiacomo C, Van Doorn LJ, Piffaretti JC (2001) Population genetics of Helicobacter pylori in the southern part of Switzerland analysed by sequencing of four housekeeping genes (atpD, glnA, scoB and recA) and by vacA, cagA, iceA and IS605 genotyping. Microbiology 147: 1693-1707.
17. Vulic M, Lenski RE, Radman M (1999) Mutation, recombination, and incipient speciation of bacteria in the laboratory. Proc Natl Acad Sci 96: 7348-7351.
18. Gressmann H, Linz B, Ghai R, Pleissner KP, Schlapbach R, et al. (2005) Gain and loss of Multiple Genes During the Evolution of Helicobacter pylori. PLoS Genetics 1: 119-128.
19. Alm RA, Ling LS, Moir DT, King BL, Brown ED, et al. (1999) Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397: 176-180.
20. Salama N, Guillemin K, McDaniel TK, Sherlock G, Tompkins L, et al. (2000) A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains. Proc Natl. Acad Sci USA 26: 14668-14673.
21. Joyce EA, Chan K, Salama NR, Falkow S (2002) Redefining bacterial populations: a post-genomic reformation. Nat Rev Genet 6: 462-473.
22. Raymond J, Thiberge JM, Chevalier C, Kalach N, Bergeret M, et al. (2004) Genetic and transmission analysis of Helicobacter pylori strains within a family. Emerg Infect Dis 10: 1816-1821.
23. Saunders NJ, Boonmee P, Peden JF, Jarvis SA (2005) Inter-species horizontal transfer resulting in core-genome and niche-adaptive variation within Helicobacter pylori. BMC Genomics 6: 9-31.
24. Ghose C, Perez-Perez GI, van Doorn LJ, Dominguez-Bello MG, Blaser MJ (2005) High frequency of gastric colonization with multiple Helicobacter pylori strains in Venezuelan subjects. J Clin Microbiol 43: 2635-2641.
25. Kim JW, Kim JG, Chae SL, Cha YJ, Park SM (2004) High prevalence of multiple strain colonization of Helicobacter pylori in Korean patients : DNA diversity among clinical isolates from the gastric corpus, antrum and duodenum. Korean J Intern Med 19: 1-9.
26. Jorgensen M, Daskalopoulos G, Warburton V, Mitchell HM, Hazell SL (1996) Multiple strain colonization and metronidazole resistance in Helicobacter-inlected patients: identification from sequential and multiple biopsy specimens. J Infect Dis 174: 631-635.
27. Israel DA, Salama N, Krishna U, Rieger UM, Atherton JC, et al. (2001) Helicobacter pylori genetic diversity within the gastric niche of a single human host. Proc Natl. Acad Sci. USA 98: 14625-14630.
28. Carroll IM, Ahmed N, Beesley SM, Khan AA, Ghousunnissa S, et al. (2004) Microevolution between paired antrad and paired antrum and corpus Helicobacter pylori isolates recovered from individual patients. J Med Microbiol 53: 669-677.
29. Kauser F, Khan AA, Hussain MA, Carroll IM, Ahman N, et al. (2004) The cag pathogenicity island of Helicobacter pylori is disrupted in the majority of patient isolates from different human populations. J Clin Microbiol 42: 5302-5308.
30. Hook-Nikanne J, Berg DE, Peek RM, Kersulyte D, Tummuru MK, Blaser MJ (1998) DNA sequence conservation and diversity in transposable element IS65 of Helicobacter pylori. Helicobacter 3: 79-85.
31. Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, et al. (2003) Traces of human migrations in Helicobacter pylori populations. Science 299: 1582-1585.
32. Ando T, Xu Q, Torres M, Kusugami K, Israel DA, et al. (2000) Restriction modification system differences in Helicobacter pylori arc a barrier to interstrain plasmid transfer. Mol Microbiol 37: 1052-1065.
33. Xu Q, Morgan RD, Roberts RJ, Blaser MJ (2000) Identification of type II restriction and modification systems in Helicobacter pylori reveals their substantial diversity among strains. Proc Natl Acad Sci 97: 9671-9676.
34. Pallen MJ. Wren BW 2007 Bacterial pathogenomics. Nature 119: 835-812.
35. Kraft C, Stack A, Josenhans C, Nichus E, Dietrich G, et al. (2006) Genomic changes during chronic Helicobacter pylori infection. J Bacteriol 188: 249-254.
36. Rothenbacher D, Bode G, Brenner H (2000) Helicobacter pylori among siblings. Lancet 355: 358-362.
37. Berg DE, Gilman RH, Lelwala-Guruge J (1997) Helicobacter pylori populations in Peruvian patients. Clin Infect Dis 25: 996-1002.
38. Knippig C, Arand F, Leodolter A, Nilius M, Bayerdorffer E, et al. (2002) Prevalence of H. pylori-infection in family members of H. pylori positive and its influence on the reinfection after successful eradication therapy: a two-year follow-up. Z Gastroenterol 40: 383-387.
39. Tomb JF, White O, Kerlavage AR, Clayton RA, Sutton GG, et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388: 539-547.
40. Swofford DL 1998. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer associates, Sunderland, Massachussetts.