Parentally imprinted allele (PIA) typing in the differentially methylated region upstream of the human H19 gene

Forensic Science International: Genetics

Volumn 2, Issue 4, 2008, Pages 286-291

  Huang, Daixin ^a   Lin, Xiaoyan ^a   Chen, Hui ^a   Yang, Qingen ^a   Jie, Ya ^a   Zhai, Xiandun ^a   Yin, Hui ^a  

^a HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

Denaturing gradient gel electrophoresis; DNA methylation; H19 gene; Haplotype; Methylation sensitive restriction enzyme; Parentally imprinted allele

Indexed keywords

GENE PRODUCT; GENOMIC DNA; PROTEIN H19;

ANALYTIC METHOD; ARTICLE; CHINESE; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA METHYLATION; FAMILY STUDY; FEMALE; FORENSIC GENETICS; GENE FREQUENCY; GENE IDENTIFICATION; GENE SEQUENCE; GENOME IMPRINTING; GENOTYPE; HAPLOTYPE; HUMAN; MALE; NUCLEOTIDE SEQUENCE; PARENT; PATERNITY; POLYMERASE CHAIN REACTION; POPULATION GENETICS; PRIORITY JOURNAL; PROBABILITY; RESTRICTION MAPPING; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 11; DNA PRIMERS; FORENSIC GENETICS; GENOMIC IMPRINTING; GENOTYPE; HAPLOTYPES; HUMANS; MICROSATELLITE REPEATS; MINISATELLITE REPEATS; PARENTS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; POLYMORPHISM, SINGLE NUCLEOTIDE; RNA, UNTRANSLATED;

EID: 48049088771     PISSN: 18724973     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fsigen.2008.03.008     Document Type: Article

References (29)

1. Lee H.S., Lee J.W., Han G.R., and Hwang J.J. Motherless case in paternity testing. Forensic Sci. Int. 114 (2000) 57-65
2. Brenner C.H. A note on motherless paternity case computation. Transfusion 33 (1993) 51-54
3. Mayr W.R. Paternity testing with unavailable putative father or mother. In: Walker R. (Ed). Inclusion Probabilities in Parentage Testing (1983), American Association of Blood Banks, Arlington, VA 377
4. Ohno Y., Sebetan I.M., and Akaishi S. A simple method for calculating the probability of excluding paternity with any number of codominant alleles. Forensic Sci. Int. 19 (1982) 93-98
5. Reik W., and Murrell A. Genomic imprinting. Silence across the border. Nature 405 (2000) 408-409
6. Mann J.R., Szabó P.E., Reed M.R., and Singer-Sam J. Methylated DNA sequences in genomic imprinting. Crit. Rev. Eukaryot. Gene Expr. 10 (2000) 241-257
7. Pfeifer K. Mechanisms of genomic imprinting. Am. J. Hum. Genet. 67 (2000) 777-787
8. Bird A. DNA methylation patterns and epigenetic memory. Genes Dev. 16 (2002) 6-21
9. Lewis A., and Reik W. How imprinting centres work. Cytogenet. Genome Res. 113 (2006) 81-89
10. Maeda N., and Hayashizaki Y. Genome-wide survey of imprinted genes. Cytogenet. Genome Res. 113 (2006) 144-152
11. Singer-Sam J., LeBon J.M., Tanguay R.L., and Riggs A.D. A quantitative HpaII-PCR assay to measure methylation of DNA from a small number of cells. Nucleic Acids Res. 18 (1990) 687
12. Herman J.G., Graff J.R., Myöhänen S., Nelkin B.D., Baylin S.B., and Methylation-specific. PCR: a novel PCR assay for methylation status of CpG islands. Proc. Natl. Acad. Sci. U.S.A. 93 (1996) 9821-9826
13. Gonzalgo M.L., and Jones P.A. Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE). Nucleic Acids Res. 25 (1997) 2529-2531
14. Frommer M., McDonald L.E., Millar D.S., Collis C.M., Watt F., Grigg G.W., Molloy P.L., and Paul C.L. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl. Acad. Sci. U.S.A. 89 (1992) 1827-1831
15. Maekawa M., Sugano K., Kashiwabara H., Ushiama M., Fujita S., Yoshimori M., and Kakizoe T. DNA methylation analysis using bisulfite treatment and PCR-single-strand conformation polymorphism in colorectal cancer showing microsatellite instability. Biochem. Biophys. Res. Commun. 262 (1999) 671-676
16. Jinno Y., Sengoku K., Nakao M., Tamate K., Miyamoto T., Matsuzaka T., Sutcliffe J.S., Anan T., Takuma N., Nishiwaki K., Ikeda Y., Ishimaru T., Ishikawa M., and Niikawa N. Mouse/human sequence divergence in a region with a paternal-specific methylation imprint at the human H19 locus. Hum. Mol. Genet. 5 (1996) 1155-1161
17. Frevel M.A., Sowerby S.J., Petersen G.B., and Reeve A.E. Methylation sequencing analysis refines the region of H19 epimutation in Wilms tumor. J. Biol. Chem. 274 (1999) 29331-29340
18. Vu T.H., Li T., Nguyen D., Nguyen B.T., Yao X.M., Hu J.F., and Hoffman A.R. Symmetric and asymmetric DNA methylation in the human IGF2-H19 imprinted region. Genomics 64 (2000) 132-143
19. Walsh P.S., Metzger D.A., and Higuchi R. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10 (1991) 506-513
20. Blin N. A general method for isolation of high molecular weight DNA from eukaryotes. Nucleic Acids Res. 3 (1976) 2303
21. Bassam B.J., Caetano-Anolles G., and Gresshoff P.M. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal. Biochem. 196 (1991) 80-83
22. Stewart F.J., and Raleigh E.A. Dependence of McrBC cleavage on distance between recognition elements. Biol. Chem. 379 (1998) 611-616
23. Edwards A., Hammond H.A., Jin L., Caskey C.T., and Chakraborty R. Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics 12 (1992) 241-253
24. Botstein D., White R.L., Skolnich M., and Davis R.W. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32 (1980) 314-331
25. Desmarais D., Zhong Y., Chakraborty R., Perreault C., and Busque L. Development of a highly polymorphic STR marker for identity testing purposes at the human androgen receptor gene (HUMARA). J. Forensic Sci. 43 (1998) 1046-1049
26. Fischer S.G., and Lerman L.S. DNA fragments differing by single base pair substitutions are separated in denaturing gradient gels: correspondence with melting theory. Proc. Natl. Acad. Sci. U.S.A. 80 (1983) 1579-1583
27. Nakayashiki N., Kanetake J., and Aoki Y. A parent-of-origin detectable polymorphism in the hypermethylated region upstream of the human H19 gene. Int. J. Legal Med. 118 (2004) 158-162
28. Chotai K.A., and Payne S.J. A rapid, PCR based test for differential molecular diagnosis of Prader-Willi and Angelman syndromes. J. Med. Genet. 35 (1998) 472-475
29. Morison I.M., Paton C.J., and Cleverley S.D. The imprinted gene and parent-of-origin effect database. Nucleic Acids Res. 29 (2001) 275-276