Structure of the C-terminal head domain of the fowl adenovirus type 1 short fibre

Virology

Volumn 378, Issue 1, 2008, Pages 169-176

  El Bakkouri, Majida ^a   Seiradake, Elena ^a   Cusack, Stephen ^a   Ruigrok, Rob W H ^a   Schoehn, Guy ^a,b  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (France)

^b INSTITUT DE BIOLOGIE STRUCTURALE   (France)

Author keywords

adenovirus; CELO short fibre head domain; Structure; X ray crystallography

Indexed keywords

AMINO ACID; VIRUS PROTEIN;

AMINO ACID ANALYSIS; AMINO ACID SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CHICK EMBRYO LETHAL ORPHAN VIRUS; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS; VIRUS FIBER;

AMINO ACID SEQUENCE; ANIMALS; CAPSID PROTEINS; CHICK EMBRYO; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; EVOLUTION, MOLECULAR; FOWL ADENOVIRUS A; HUMANS; MODELS, MOLECULAR; PHYLOGENY;

ADENOVIRIDAE; AVES; AVIADENOVIRUS; FOWL ADENOVIRUS 1; MAMMALIA; MASTADENOVIRUS; VERTEBRATA;

EID: 47749143207     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2008.05.011     Document Type: Article

References (60)

1. Arnberg N., Edlund K., Kidd A.H., and Wadell G. Adenovirus type 37 uses sialic acid as a cellular receptor. J Virol 74 1 (2000) 42-48
2. Bamford D.H., Grimes J.M., and Stuart D.I. What does structure tell us about virus evolution?. Curr. Opin. Struct. Biol. 15 6 (2005) 655-663
3. Bergelson J.M., Cunningham J.A., Droguett G., Kurt-Jones E.A., Krithivas A., Hong J.S., Horwitz M.S., Crowell R.L., and Finberg R.W. Isolation of a common receptor for Coxsackie B viruses and adenoviruses 2 and 5. Science 275 5304 (1997) 1320-1323
4. Bewley M.C., Springer K., Zhang Y.B., Freimuth P., and Flanagan J.M. Structural analysis of the mechanism of adenovirus binding to its human cellular receptor, CAR. Science 286 5444 (1999) 1579-1583
5. Bond C.S. TopDraw: a sketchpad for protein structure topology cartoons. Bioinformatics 19 2 (2003) 311-312
6. Burmeister W.P., Guilligay D., Cusack S., Wadell G., and Arnberg N. Crystal structure of species D adenovirus fiber knobs and their sialic acid binding sites. J Virol 78 14 (2004) 7727-7736
7. Chiocca S., Kurzbauer R., Schaffner G., Baker A., Mautner V., and Cotten M. The complete DNA sequence and genomic organization of the avian adenovirus CELO. J. Virol. 70 5 (1996) 2939-2949
8. Chiou S.H., Chow K.C., Yang C.H., Chiang S.F., and Lin C.H. Discovery of Epstein-Barr virus (EBV)-encoded RNA signal and EBV nuclear antigen leader protein DNA sequence in pet dogs. J. Gen. Virol. 86 Pt 4 (2005) 899-905
9. Cowen B., Calnek B.W., Menendez N.A., and Ball R.F. Avian adenoviruses: effect on egg production, shell quality, and feed consumption. Avian Dis. 22 3 (1978) 459-470
10. Davis I.W., Leaver-Fay A., Chen V.B., Block J.N., Kapral G.J., Wang X., Murray L.W., Arendall III W.B., Snoeyink J., Richardson J.S., and Richardson D.C. MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res. 35 (2007) W375-W383 (Web Server issue)
11. Davison A.J., Benko M., and Harrach B. Genetic content and evolution of adenoviruses. J. Gen. Virol. 84 Pt 11 (2003) 2895-2908
12. De La Fortelle E., and Bricogne G. Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. Methods Enzymol. 276 (1997) 472-494
13. DeLano W.L. The PyMOL Molecular Graphics System (2002), DeLano Scientific, San Carlos, CA
14. Dubose R.J., and Grumbles L.C. The relationship between quail bronchitis virus and chicken embryo lethal orphan virus. Avian Dis. 3 (1959) 321-344
15. Durmort C., Stehlin C., Schoehn G., Mitraki A., Drouet E., Cusack S., and Burmeister W.P. Structure of the fiber head of Ad3, a non-CAR-binding serotype of adenovirus. Virology 285 2 (2001) 302-312
16. Emsley P., and Cowtan K. Coot: model-building tools for molecular graphics. Acta Crystallogr D. Biol. Crystallogr. 60 Pt 12 Pt 1 (2004) 2126-2132
17. Fabry C.M., Rosa-Calatrava M., Conway J.F., Zubieta C., Cusack S., Ruigrok R.W., and Schoehn G. A quasi-atomic model of human adenovirus type 5 capsid. EMBO J. 24 9 (2005) 1645-1654
18. Felsenstein J. Mathematics vs. evolution: mathematical evolutionary theory. Science 246 4932 (1989) 941-942
19. Felsenstein J. An alternating least squares approach to inferring phylogenies from pairwise distances. Syst Biol. 46 1 (1997) 101-111
20. Fleischli C., Sirena D., Lesage G., Havenga M.J., Cattaneo R., Greber U.F., and Hemmi S. Species B adenovirus serotypes 3, 7, 11 and 35 share similar binding sites on the membrane cofactor protein CD46 receptor. J. Gen. Virol. 88 Pt 11 (2007) 2925-2934
21. Fuschiotti P., Schoehn G., Fender P., Fabry C.M., Hewat E.A., Chroboczek J., Ruigrok R.W., and Conway J.F. Structure of the dodecahedral penton particle from human adenovirus type 3. J. Mol. Biol. 356 2 (2006) 510-520
22. Gaggar A., Shayakhmetov D.M., and Lieber A. CD46 is a cellular receptor for group B adenoviruses. Nat. Med. 9 11 (2003) 1142-1408
23. Galtier N., Gouy M., and Gautier C. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12 6 (1996) 543-548
24. Gelderblom H., and Maichle-Lauppe I. The fibers of fowl adenoviruses. Arch. Virol. 72 4 (1982) 289-298
25. Gouet P., Courcelle E., Stuart D.I., and Metoz F. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15 4 (1999) 305-308
26. Guardado-Calvo P., Llamas-Saiz A.L., Langlois P., and van Raaij M.J. Crystallization of the C-terminal head domain of the avian adenovirus CELO long fibre. Acta Crystallogr., Sect. F Struct. Biol. Cryst. Commun. 62 Pt 5 (2006) 449-452
27. Guardado-Calvo P., Llamas-Saiz A.L., Fox G.C., Langlois P., and van Raaij M.J. Structure of the C-terminal head domain of the fowl adenovirus type 1 long fiber. J. Gen. Virol. 88 Pt 9 (2007) 2407-2416
28. Hess M., Cuzange A., Ruigrok R.W., Chroboczek J., and Jacrot B. The avian adenovirus penton: two fibres and one base. J. Mol. Biol. 252 4 (1995) 379-385
29. Holst M., Kozack R.E., Saied F., and Subramaniam S. Protein electrostatics: rapid multigrid-based Newton algorithm for solution of the full nonlinear Poisson-Boltzmann equation. J. Biomol. Struct Dyn. 11 6 (1994) 1437-1445
30. Horwitz M. Adenoviruses. In: Fields B., and Knipe D. (Eds). Fields Virology vol. 2 (1996), Raven Press, Philadelphia, PA 2149-2171 2 vols
31. Kabsch W. Evaluation of single-crystal X-ray diffraction data from a position-sensitive detector. J. Appl. Crystallogr. 21 (1988) 916-924
32. Krissinel E., and Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr., D Biol. Crystallogr. 60 Pt 12 Pt 1 (2004) 2256-2268
33. Laver W.G., Younghusband H.B., and Wrigley N.G. Purification and properties of chick embryo lethal orphan virus (an avian adenovirus). Virology 45 3 (1971) 598-614
34. Lu G. TOP: a new method for protein structure comparisons and similarity searches. J. Appl. Crystallogr. 33 (2000) 176-183
35. Madisch I., Hofmayer S., Moritz C., Grintzalis A., Hainmueller J., Pring-Akerblom P., and Heim A. Phylogenetic analysis and structural predictions of human adenovirus penton proteins as a basis for tissue-specific adenovirus vector design. J. Virol. 81 15 (2007) 8270-8281
36. McCoy A.J., Grosse-Kunstleve R.W., Storoni L.C., and Read R.J. Likelihood-enhanced fast translation functions. Acta Crystallogr., D Biol. Crystallogr. 61 Pt 4 (2005) 458-464
37. Merckel M.C., Huiskonen J.T., Bamford D.H., Goldman A., and Tuma R. The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture. Mol. Cell 18 2 (2005) 161-170
38. Murshudov G.N., Vagin A.A., and Dodson E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr., D Biol. Crystallogr. 53 Pt 3 (1997) 240-255
39. Payet V., Arnauld C., Picault J.P., Jestin A., and Langlois P. Transcriptional organization of the avian adenovirus CELO. J. Virol. 72 11 (1998) 9278-9285
40. Perrakis A., Morris R., and Lamzin V.S. Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 6 5 (1999) 458-463
41. Persson B.D., Reiter D.M., Marttila M., Mei Y.F., Casasnovas J.M., Arnberg N., and Stehle T. Adenovirus type 11 binding alters the conformation of its receptor CD46. Nat. Struct. Mol. Biol. 14 2 (2007) 164-166
42. Rekosh D.M., Russell W.C., Bellet A.J., and Robinson A.J. Identification of a protein linked to the ends of adenovirus DNA. Cell 11 2 (1977) 283-295
43. Roelvink P.W., Lizonova A., Lee J.G., Li Y., Bergelson J.M., Finberg R.W., Brough D.E., Kovesdi I., and Wickham T.J. The coxsackievirus-adenovirus receptor protein can function as a cellular attachment protein for adenovirus serotypes from subgroups A, C, D, E, and F. J. Virol. 72 10 (1998) 7909-7915
44. Segerman A., Atkinson J.P., Marttila M., Dennerquist V., Wadell G., and Arnberg N. Adenovirus type 11 uses CD46 as a cellular receptor. J. Virol. 77 17 (2003) 9183-9191
45. Seiradake E., and Cusack S. Crystal structure of enteric adenovirus serotype 41 short fiber head. J. Virol. 79 22 (2005) 14088-14094
46. Seiradake E., Lortat-Jacob H., Billet O., Kremer E.J., and Cusack S. Structural and mutational analysis of human Ad37 and canine adenovirus 2 fiber heads in complex with the D1 domain of coxsackie and adenovirus receptor. J. Biol. Chem. 281 44 (2006) 33704-33716
47. Sheldrick G.M. A short history of SHELX. Acta Crystallogr., A 64 Pt 1 (2008) 112-122
48. Sirena D., Lilienfeld B., Eisenhut M., Kalin S., Boucke K., Beerli R.R., Vogt L., Ruedl C., Bachmann M.F., Greber U.F., and Hemmi S. The human membrane cofactor CD46 is a receptor for species B adenovirus serotype 3. J. Virol. 78 9 (2004) 4454-4462
49. Stewart P.L., Burnett R.M., Cyrklaff M., and Fuller S.D. Image reconstruction reveals the complex molecular organization of adenovirus. Cell 67 1 (1991) 145-154
50. Stewart P.L., Fuller S.D., and Burnett R.M. Difference imaging of adenovirus: bridging the resolution gap between X-ray crystallography and electron microscopy. EMBO J. 12 7 (1993) 2589-2599
51. Tan P.K., Michou A.I., Bergelson J.M., and Cotten M. Defining CAR as a cellular receptor for the avian adenovirus CELO using a genetic analysis of the two viral fibre proteins. J. Gen. Virol. 82 Pt 6 (2001) 1465-1472
52. Terwilliger T.C. Statistical density modification with non-crystallographic symmetry. Acta Crystallogr., D Biol. Crystallogr. 58 Pt 12 (2002) 2082-2086
53. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 22 (1994) 4673-4680
54. Tomko R.P., Xu R., and Philipson L. HCAR and MCAR: the human and mouse cellular receptors for subgroup C adenoviruses and group B coxsackieviruses. Proc. Natl. Acad. Sci.U. S. A. 94 7 (1997) 3352-3356
55. van Raaij M.J., Louis N., Chroboczek J., and Cusack S. Structure of the human adenovirus serotype 2 fiber head domain at 1.5 Å resolution. Virology 262 2 (1999) 333-343
56. Wu E., Fernandez J., Fleck S.K., Von Seggern D.J., Huang S., and Nemerow G.R. Virology 279 (2001) 78-89
57. Xia D., Henry L.J., Gerard R.D., and Deisenhofer J. Crystal structure of the receptor-binding domain of adenovirus type 5 fiber protein at 1.7 Å resolution. Structure 2 12 (1994) 1259-1270
58. Xu L., Benson S.D., and Burnett R.M. Nanoporous crystals of chicken embryo lethal orphan (CELO) adenovirus major coat protein, hexon. J. Struct. Biol. 157 2 (2007) 424-431
59. Yates V.J., and Fry D.E. Observations on a chicken embryo lethal orphan (CELO) virus. Am. J. Vet. Res. 18 68 (1957) 657-660
60. Zubieta C., Schoehn G., Chroboczek J., and Cusack S. The structure of the human adenovirus 2 penton. Mol. Cell 17 1 (2005) 121-135