Use of SSR markers to assess identity, pedigree, and diversity of cultivated muscadine grapes

Journal of the American Society for Horticultural Science

Volumn 133, Issue 4, 2008, Pages 559-568

  Riaz, Summaira ^a   Tenscher, Alan C ^a   Smith, Brady P ^a   Ng, Daniel A ^a   Walker, M Andrew ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

DNA fingerprinting; Germplasm management; Muscadinia rotundifolia; VR hybrids

Indexed keywords

DAKTULOSPHAIRA VITIFOLIAE; ERYSIPHALES; ERYSIPHE NECATOR; MELOIDOGYNE; MELOIDOGYNE JAVANICA; NECATOR; VITACEAE; VITIS; VITIS ROTUNDIFOLIA; VITIS ROTUNDIFOLIA ROTUNDIFOLIA; VITIS VINIFERA; XIPHINEMA INDEX; XYLELLA FASTIDIOSA;

EID: 47749124557     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.133.4.559     Document Type: Article

References (46)

1. Adam-Blondon, A.-F., C. Roux, D. Claux, G. Butterlin, D. Merdinoglu, and P. This. 2004. Mapping 245 SSR markers on the Vitis vinifera genome: A tool for grape genetics. Theor. Appl. Genet. 109:1017-1027.
2. Aradhya, M.K., G.S. Dangl, B.H. Prins, J.-M. Bourisquot, M.A. Walker, C.P. Meredith, and C.J. Simon. 2003. Genetic structure and differentiation in cultivated grape, Vitis vinifera L. Genet. Res. 81:179-192.
3. Barker, C.L., T. Donald, J. Pauquet, M.B. Ratnaparkhe, A. Bouquet, A.-F. Adam-Blondon, M.R. Thomas, and I. Dry. 2005. Genetic and physical mapping of the grape powdery mildew resistance gene, Run1, using a bacterial artificial chromosome library. Theor. Appl. Genet. 111:370-377.
4. Bates, R.P., J.A. Mortensen, and T.E. Crocker. 1980. Florida grapes: The next decade. Proc. Florida State Hort. Soc. 93:120-124.
5. Bowcock, A.M., A. Ruiz-Linares, J. Tomfohrde, E. Minch, J.R. Kidd, and L.L. Cavalli-Sforza. 1994. High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368:455-457.
6. Bowers, J.E., G.S. Dangl, and C.P. Meredith. 1999. Development and characterization of additional microsatellite DNA markers for grape. Amer. J. Enol. Viticult. 50:243-246.
7. Bowers, J.E., G.S. Dangl, R. Vignani, and C.P. Meredith. 1996. Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). Genome 39:628-633.
8. Brooks, R.M. and H.P. Olmo. 1997. The Brooks and Olmo register of fruit and nut varieties. ASHS Press, Alexandria, VA.
9. Calenge, F. and C.E. Durel. 2006. Both stable and unstable QTLs for resistance to powdery mildew are detected in apple after four years of field assessments. Mol. Breed. 17:329-339.
10. Dangl, G.S., M.L. Mendum, B.H. Prins, M.A. Walker, C.P. Meredith, and C.J. Simon. 2001. Simple sequence repeat analysis of a clonally propagated species: A tool for managing a grape germplasm collection. Genome 44:432-438.
11. Dearing, C. 1917. Muscadine grape breeding. J. Hered. 8:409-424.
12. Dearing, C. 1948. New muscadine grapes. U.S. Dept. Agr. Circ. 769.
13. Detjen, L.R. 1919. Some F1 hybrids of Vitis rotundifolia with related species and genera. North Carolina Agr. Expt. Sta. Tech. Bull. No. 18.
14. Di Gaspero, G., G. Cipriani, A.-F. Adam-Blondon, and R. Testolin. 2007. Linkage maps of grapevine displaying the chromosomal locations of 420 microsatellite markers and 82 markers for R-gene candidates. Theor. Appl. Genet. 114:1249-1263.
15. Di Gaspero, G., E. Peterlunger, R. Testolin, K.J. Edwards, and G. Cipriani. 2000. Conservation of microsatellite loci within the genus Vitis. Theor. Appl. Genet. 101:301-308.
16. Doligez, A., A.-F. Adam-Blondon, G. Cipriani, G. Di Gaspero, V. Laucou, D. Merdinoglu, C.P. Meredith, S. Riaz, C. Roux, and P. This. 2006. An integrated SSR map of grapevine based on five different populations. Theor. Appl. Genet. 113:369-382.
17. Felsenstein, J. 2006. PHYLIP 3.6: Phylogeny inference package. 26 Mar. 2008. 〈http://evolution.genetics.washington.edu/phylip/getme.html〉.
18. Galet, P. 1998. Grape varieties and rootstock varieties. Oenoplurimédia, Chaintré, France.
19. Husmann, G.C. and C. Dearing. 1913. Muscadine grapes. U.S. Dept. Agr. Farmers' Bull. 273.
20. Lane, R.P. 1980. 'Triumph' muscadine grape. HortScience 15:322.
21. Liberty Hyde Bailey Horitorium 1976. Hortus third. A concise dictionary of plants cultivated in the United States and Canada. Macmillan, New York.
22. Lodhi, M.A., B.I. Reisch, and N.F. Weeden. 1994. A simple and efficient method for DNA extraction from grapevine cultivars and Vitis species. Plant Mol. Biol. Rpt. 12:6-13.
23. Lowe, K.M. and M.A. Walker. 2006. Genetic linkage map of the interspecific grape rootstock cross Ramsey (Vitis champinii) x Riparia Gloire (Vitis riparia). Theor. Appl. Genet. 112:1582-1592.
24. Merdinoglu, D., G. Butterlin, L. Bevilacqua, V. Chiquet, A.-F. Adam-Blondon, and S. Decroocq. 2005. Development and characterization of a large set of microsatellite markers in grapevine (Vitis vinifera L.) suitable for multiplex PCR. Mol. Breed. 15:349-366.
25. Minch, E. 1997. Microsat, version 1.5b. 1 Feb. 2008. 〈http://hpgl. stanford.edu/projects/microsat/〉.
26. Mortensen, J.A. 1971. Breeding grapes for central Florida. HortScience 6:7-11.
27. Mortensen, J.A. 2001. Cultivars, p. 91-105. In: F.M. Basiouny and D.G. Himelrick (eds.). Muscadine grapes. ASHS Crop Production Series, Alexandria, VA.
28. Mortensen, J.A., J.W. Harris, D.L. Hopkins, and P.C. Andersen. 1994. 'Southern Home': An interspecific hybrid grape with ornamental value. HortScience 29:1371-1372.
29. Munson, T.V. 1909. Foundations of American grape culture. T.V. Munson and Son, Denison, TX.
30. National Center for Biotechnology Information. 2005. Summary of maps in uniSTS. 26 Mar. 2008. 〈http://www.ncbi.nlm.nih.gov/sites/entrez?db= unists&cmd=search&term=vitis〉.
31. Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
32. Olmo, H.P. 1986. The potential role of (vinifera x rotundifolia) hybrids in grape variety improvement. Experientia 42:921-926.
33. Olmo, H.P. 1995. Grapes, p. 485-490. In: J. Smart, and M.W. Simmonds (eds.). Evolution of crop plants. 2nd ed. Longman Group, Harlow, UK.
34. Page, R.D.M. 1996. TreeView: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357-358.
35. Park, S.D.E. 2001. Trypanotolerance in West African cattle and the population genetic effects of selection. Ph.D. thesis. Trinity College, Dublin, Ireland.
36. Patel, G.I. and H.P. Olmo. 1955. Cytogenetics of Vitis: I. The hybrid of V. vinifera x V. rotundifolia. Amer. J. Bot. 42:141-159.
37. Pauquet, J., A. Bouquet, P. This, and A.-F. Adam-Blondon. 2001. Establishment of a local map of AFLP markers around the powdery mildew resistance gene Run1 in grapevine and assessment of their usefulness for marker aided selection. Theor. Appl. Genet. 103:1201-1210.
38. Reimer, F.C. and L.R. Detjen. 1914. Breeding rotundifolia grapes: A study of transmission of character. North Carolina Agr. Expt. Sta. Tech. Bull. No. 10.
39. Riaz, S., G.S. Dangl, K.J. Edward, and C.P. Meredith. 2004. A microsatellite marker based framework linkage map of Vitis vinifera L. Theor. Appl. Genet. 108:864-872.
40. Riaz, S., A.F. Krivanek, K. Xu, and M.A. Walker. 2006. Refined mapping of the Pierce's disease resistance locus, PdR1, and sex on an extended genetic map of Vitis rupestris x Vitis arizonica. Theor. Appl. Genet. 113:1317-1329.
41. Sefc, K.M., F. Regner, E. Turetschek, J. Glössl, and H. Steinkellner. 1999. Identification of microsatellite sequences in Vitis riparia and their applicability for genotyping of different Vitis species. Genome 42:367-373.
42. Sneath, R.R. and R.R. Sokal. 1973. Numerical taxonomy. Freeman, San Francisco.
43. Thomas, M.R., P. Cain, and N.S. Scott. 1994. DNA typing of grapevines: A universal methodology and database for describing cultivars and evaluating genetic relatedness. Plant Mol. Biol. 25:939-949.
44. Tommasini, L., N. Yahiaoui, P. Srichumpa, and B. Keller. 2006. Development of functional molecular markers specific for seven Pm3 resistance alleles and their validation in the bread wheat gene pool. Theor. Appl. Genet. 114:165-175.
45. University of California. 2003. UC Davis College of Agriculture and Environmental Sciences Genome Facility. 26 Mar. 2008. 〈http://cgf.ucdavis. edu/SequencePHP/Visitors/Pipeline/getspecie/getspeciesaction.php?PlantGenusid= 1〉.
46. Walker, M.A., L.A. Lider, A.C. Goheen, and H.P. Olmo. 1991. VR O39-16. HortScience 26:1224-1225.