Multiple alignment and structure prediction of non-coding RNA sequences

BMC Bioinformatics

Volumn 8, Issue SUPPL. 8, 2007, Pages

  Lindgreen, Stinus ^a   Gardner, Paul P ^b   Krogh, Anders ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

MULTIPLE ALIGNMENT; NON-CODING RNAS; STRUCTURE PREDICTION;

UNTRANSLATED RNA;

CLINICAL ASSESSMENT TOOL; COMPUTER PROGRAM; CONFERENCE PAPER; CONTROLLED STUDY; MONTE CARLO METHOD; PREDICTION; PROBABILITY; RNA ANALYSIS; RNA SEQUENCE; RNA STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS;

EID: 47649119740     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-S8-P8     Document Type: Conference Paper

References (6)

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2. Havgaard JH Lyngsø RB Stormo GD Gorodkin J Pairwise local structural alignment of RNA sequences with sequence similarity less than 40% Bioinformatics 2005 21 9 1815-1824 10.1093/bioinformatics/bti279 15657094
3. Mathews DH Turner DH Dynalign: An algorithm for finding the secondary structure common to two RNA sequences J Mol Biol 2002 317 2 191-203 10.1006/jmbi.2001.5351 11902836
4. Torarinsson E Havgaard JH Gorodkin J Multiple structural alignment and clustering of RNA sequences Bioinformatics 2007 23 8 926-932 10.1093/ bioinformatics/btm049 17324941
5. Will S Reiche K Hofacker IL Stadler PF Backofen R Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering PLoS Comput Biol 2007 3 4 e65 1851984 17432929 10.1371/ journal.pcbi.0030065
6. Xu X Ji Y Stormo GD RNA Sampler: A new sampling based algorithm for common RNA secondary structure prediction and structural alignment Bioinformatics 2007