DNA copy number changes in high-grade malignant peripheral nerve sheath tumors by array CGH

Molecular Cancer

Volumn 7, Issue , 2008, Pages

  Kresse, Stine H ^a,b   Skårn, Magne ^a   Ohnstad, Hege O ^a   Namløs, Heidi M ^a   Bjerkehagen, Bodil ^a   Myklebost, Ola ^a,c   Meza Zepeda, Leonardo A ^a,c  

^a OSLO UNIVERSITY HOSPITAL   (Norway)

^b UNIVERSITY OF OSLO   (Norway)

^c UNIVERSITY OF OSLO   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

CARRIER PROTEIN; COMPLEMENTARY DNA; DNA; DNA TOPOISOMERASE (ATP HYDROLYSING); HOMEODOMAIN PROTEIN; LEUCINE ZIPPER PROTEIN; MICRORNA; MONOCARBOXYLATE TRANSPORTER 4; PROTEIN LYSINE 6 OXIDASE; RAB PROTEIN; SCAVENGER RECEPTOR; SURVIVIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR E1AF; TRANSCRIPTION FACTOR ETV4; TUMOR SUPPRESSOR PROTEIN; ZINC FINGER PROTEIN; BIRC5 PROTEIN, HUMAN; DNA BINDING PROTEIN; DNA TOPOISOMERASE II ALPHA; E1A PROTEIN; ETV4 PROTEIN, HUMAN; LOXL2 PROTEIN, HUMAN; MICROTUBULE ASSOCIATED PROTEIN; ONCOPROTEIN; OXIDOREDUCTASE; TUMOR ANTIGEN; TUMOR PROTEIN;

ADULT; AGED; ARTICLE; CANCER GRADING; CANCER SURVIVAL; CHROMOSOME 17Q; CHROMOSOME 1Q; CHROMOSOME 8P; CHROMOSOME 9Q; CHROMOSOME ABERRATION; CLINICAL ARTICLE; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; CORRELATION ANALYSIS; DISEASE FREE SURVIVAL; FEMALE; GENE EXPRESSION PROFILING; GENE OVEREXPRESSION; HUMAN; HUMAN CELL; MALE; MICROARRAY ANALYSIS; NERVE SHEATH TUMOR; OUTCOME ASSESSMENT; PREDICTION; PROGNOSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; CHROMOSOME 17; CHROMOSOME 8; DNA MICROARRAY; ENZYMOLOGY; GENE DOSAGE; GENE EXPRESSION REGULATION; GENETICS; METHODOLOGY; MIDDLE AGED; MORTALITY; SOFT TISSUE TUMOR;

ADENOVIRUS E1A PROTEINS; ADULT; AGED; AMINO ACID OXIDOREDUCTASES; ANTIGENS, NEOPLASM; CHROMOSOMES, HUMAN, PAIR 17; CHROMOSOMES, HUMAN, PAIR 8; DNA TOPOISOMERASES, TYPE II, EUKARYOTIC; DNA, NEOPLASM; DNA-BINDING PROTEINS; FEMALE; GENE DOSAGE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; MALE; MICROTUBULE-ASSOCIATED PROTEINS; MIDDLE AGED; NEOPLASM PROTEINS; NERVE SHEATH NEOPLASMS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROGNOSIS; PROTO-ONCOGENE PROTEINS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SOFT TISSUE NEOPLASMS;

EID: 47349087197     PISSN: None     EISSN: 14764598     Source Type: Journal    
DOI: 10.1186/1476-4598-7-48     Document Type: Article

References (39)

1. Friedman JM Epidemiology of neurofibromatosis type 1 Am J Med Genet 1999, 89(1):1-6. 10.1002/ (SICI)1096-8628(19990326)89:1<1::AID-AJMG3>3.0.CO;2-8 10469430
2. Sorensen SA Mulvihill JJ Nielsen A Long-term follow-up of von Recklinghausen neurofibromatosis. Survival and malignant neoplasms N Engl J Med 1986, 314(16):1010-1015. 3083258
3. Woodruff JM Pathology of the major peripheral nerve sheath neoplasms Monogr Pathol 1996, 38:129-161. 8744276
4. Mertens F Dal Cin P De Wever I Fletcher CD Mandahl N Mitelman F Rosai J Rydholm A Sciot R Tallini G van Den Berghe H Vanni R Willen H Cytogenetic characterization of peripheral nerve sheath tumours: A report of the CHAMP study group J Pathol 2000, 190(1):31-38. 10.1002/ (SICI)1096-9896(200001)190:1<31::AID-PATH505>3.0.CO;2-# 10640989
5. Mertens F Rydholm A Bauer HF Limon J Nedoszytko B Szadowska A Willen H Heim S Mitelman F Mandahl N Cytogenetic findings in malignant peripheral nerve sheath tumors Int J Cancer 1995, 61(6):793-798. 10.1002/ ijc.2910610609 7790113
6. Lothe RA Karhu R Mandahl N Mertens F Saeter G Heim S Borresen-Dale AL Kallioniemi OP Gain of 17q24-qter detected by comparative genomic hybridization in malignant tumors from patients with von Recklinghausen's neurofibromatosis Cancer Res 1996, 56(20):4778-4781. 8840998
7. Mechtersheimer G Otano-Joos M Ohl S Benner A Lehnert T Willeke F Moller P Otto HF Lichter P Joos S Analysis of chromosomal imbalances in sporadic and NF1-associated peripheral nerve sheath tumors by comparative genomic hybridization Genes Chromosomes Cancer 1999, 25(4):362-369. 10.1002/ (SICI)1098-2264(199908)25:4<362::AID-GCC8>3.0.CO;2-Q 10398430
8. Nakagawa Y Yoshida A Numoto K Kunisada T Wai D Ohata N Takeda K Kawai A Ozaki T Chromosomal imbalances in malignant peripheral nerve sheath tumor detected by metaphase and microarray comparative genomic hybridization Oncol Rep 2006, 15(2):297-303. 16391845
9. Schmidt H Taubert H Meye A Wurl P Bache M Bartel F Holzhausen HJ Hinze R Gains in chromosomes 7, 8q, 15q and 17q are characteristic changes in malignant but not in benign peripheral nerve sheath tumors from patients with Recklinghausen's disease Cancer Lett 2000, 155(2):181-190. 10.1016/ S0304-3835(00)00426-2 10822134
10. Schmidt H Wurl P Taubert H Meye A Bache M Holzhausen HJ Hinze R Genomic imbalances of 7p and 17q in malignant peripheral nerve sheath tumors are clinically relevant Genes Chromosomes Cancer 1999, 25(3):205-211. 10.1002/(SICI)1098-2264(199907)25:3<205::AID-GCC2>3.0.CO;2-B 10379866
11. Skotheim RI Kallioniemi A Bjerkhagen B Mertens F Brekke HR Monni O Mousses S Mandahl N Saeter G Nesland JM Smeland S Kallioniemi OP Lothe RA Topoisomerase-II alpha is upregulated in malignant peripheral nerve sheath tumors and associated with clinical outcome J Clin Oncol 2003, 21(24):4586-4591. 10.1200/JCO.2003.07.067 14673046
12. Francis P Namlos HM Muller C Eden P Fernebro J Berner JM Bjerkehagen B Akerman M Bendahl PO Isinger A Rydholm A Myklebost O Nilbert M Diagnostic and prognostic gene expression signatures in 177 soft tissue sarcomas: Hypoxia-induced transcription profile signifies metastatic potential BMC genomics 2007, 8:73. 1839099 17359542 10.1186/ 1471-2164-8-73
13. Koga T Iwasaki H Ishiguro M Matsuzaki A Kikuchi M Frequent genomic imbalances in chromosomes 17, 19, and 22q in peripheral nerve sheath tumours detected by comparative genomic hybridization analysis J Pathol 2002, 197(1):98-107. 10.1002/path.1101 12081210
14. Bridge RS Bridge JA Neff JR Naumann S Althof P Bruch LA Recurrent chromosomal imbalances and structurally abnormal breakpoints within complex karyotypes of malignant peripheral nerve sheath tumour and malignant triton tumour: A cytogenetic and molecular cytogenetic study J Clin Pathol 2004, 57(11):1172-1178. 1770473 15509679 10.1136/ jcp.2004.019026
15. Evans DG Baser ME McGaughran J Sharif S Howard E Moran A Malignant peripheral nerve sheath tumours in neurofibromatosis 1 J Med Genet 2002, 39(5):311-314. 1735122 12011145 10.1136/jmg.39.5.311
16. Hagel C Zils U Peiper M Kluwe L Gotthard S Friedrich RE Zurakowski D von Deimling A Mautner VF Histopathology and clinical outcome of NF1-associated vs. sporadic malignant peripheral nerve sheath tumors J Neurooncol 2007, 82(2):187-192. 10.1007/s11060-006-9266-2 17111191
17. Anghileri M Miceli R Fiore M Mariani L Ferrari A Mussi C Lozza L Collini P Olmi P Casali PG Pilotti S Gronchi A Malignant peripheral nerve sheath tumors: Prognostic factors and survival in a series of patients treated at a single institution Cancer 2006, 107(5):1065-1074. 10.1002/ cncr.22098 16881077
18. Cashen DV Parisien RC Raskin K Hornicek FJ Gebhardt MC Mankin HJ Survival data for patients with malignant schwannoma Clin Orthop Relat Res 2004, 69-73. 10.1097/01.blo.0000131256.82455.c5 15346054
19. Forus A Weghuis DO Smeets D Fodstad O Myklebost O van Kessel AG Comparative genomic hybridization analysis of human sarcomas: I. Occurrence of genomic imbalances and identification of a novel major amplicon at 1q21-q22 in soft tissue sarcomas Genes Chromosomes Cancer 1995, 14(1):8-14. 10.1002/gcc.2870140103 8527390
20. Tarkkanen M Huuhtanen R Virolainen M Wiklund T Asko-Seljavaara S Tukiainen E Lepantalo M Elomaa I Knuutila S Comparison of genetic changes in primary sarcomas and their pulmonary metastases Genes Chromosomes Cancer 1999, 25(4):323-331. 10.1002/ (SICI)1098-2264(199908)25:4<323::AID-GCC3>3.0.CO;2-5 10398425
21. Fong SF Dietzsch E Fong KS Hollosi P Asuncion L He Q Parker MI Csiszar K Lysyl oxidase-like 2 expression is increased in colon and esophageal tumors and associated with less differentiated colon tumors Genes Chromosomes Cancer 2007, 46(7):644-655. 10.1002/gcc.20444 17394133
22. Akiri G Sabo E Dafni H Vadasz Z Kartvelishvily Y Gan N Kessler O Cohen T Resnick M Neeman M Neufeld G Lysyl oxidase-related protein-1 promotes tumor fibrosis and tumor progression in vivo Cancer Res 2003, 63(7):1657-1666. 12670920
23. Berner JM Sorlie T Mertens F Henriksen J Saeter G Mandahl N Brogger A Myklebost O Lothe RA Chromosome band 9p21 is frequently altered in malignant peripheral nerve sheath tumors: Studies of CDKN2A and other genes of the pRB pathway Genes Chromosomes Cancer 1999, 26(2):151-160. 10.1002/(SICI)1098-2264(199910)26:2<151::AID-GCC7>3.0.CO;2-A 10469453
24. Perrone F Tabano S Colombo F Dagrada G Birindelli S Gronchi A Colecchia M Pierotti MA Pilotti S p15INK4b, p14ARF, and p16INK4a inactivation in sporadic and neurofibromatosis type 1-related malignant peripheral nerve sheath tumors Clin Cancer Res 2003, 9(11):4132-4138. 14519636
25. Sharpless NE INK4a/ARF: A multifunctional tumor suppressor locus Mutat Res 2005, 576(1-2):22-38. 15878778
26. Storlazzi CT Brekke HR Mandahl N Brosjo O Smeland S Lothe RA Mertens F Identification of a novel amplicon at distal 17q containing the BIRC5/ SURVIVIN gene in malignant peripheral nerve sheath tumours J Pathol 2006, 209(4):492-500. 10.1002/path.1998 16721726
27. Fukuda S Pelus LM Survivin, a cancer target with an emerging role in normal adult tissues Mol Cancer Ther 2006, 5(5):1087-1098. 10.1158/ 1535-7163.MCT-05-0375 16731740
28. Osaka E Suzuki T Osaka S Yoshida Y Sugita H Asami S Tabata K Sugitani M Nemoto N Ryu J Survivin expression levels as independent predictors of survival for osteosarcoma patients J Orthop Res 2007, 25(1):116-121. 10.1002/jor.20291 17034065
29. Karube K Nabeshima K Ishiguro M Harada M Iwasaki H cDNA microarray analysis of cancer associated gene expression profiles in malignant peripheral nerve sheath tumours J Clin Pathol 2006, 59(2):160-165. 10.1136/jcp.2004.023598 16443732
30. Levy P Vidaud D Leroy K Laurendeau I Wechsler J Bolasco G Parfait B Wolkenstein P Vidaud M Bieche I Molecular profiling of malignant peripheral nerve sheath tumors associated with neurofibromatosis type 1, based on large-scale real-time RT-PCR Mol Cancer 2004, 3:20. 493279 15255999 10.1186/1476-4598-3-
31. Horiuchi S Yamamoto H Min Y Adachi Y Itoh F Imai K Association of ets-related transcriptional factor E1AF expression with tumour progression and overexpression of MMP-1 and matrilysin in human colorectal cancer J Pathol 2003, 200(5):568-576. 10.1002/path.1387 12898592
32. Yamamoto H Horiuchi S Adachi Y Taniguchi H Nosho K Min Y Imai K Expression of ets-related transcriptional factor E1AF is associated with tumor progression and over-expression of matrilysin in human gastric cancer Carcinogenesis 2004, 25(3):325-332. 10.1093/carcin/bgh011 14604892
33. Garzon R Fabbri M Cimmino A Calin GA Croce CM MicroRNA expression and function in cancer Trends Mol Med 2006, 12(12):580-587. 10.1016/ j.molmed.2006.10.006 17071139
34. Calin GA Croce CM MicroRNAs and chromosomal abnormalities in cancer cells Oncogene 2006, 25(46):6202-6210. 10.1038/sj.onc.1209910 17028600
35. Zhang L Huang J Yang N Greshock J Megraw MS Giannakakis A Liang S Naylor TL Barchetti A Ward MR Yao G Medina A O'Brien-Jenkins A Katsaros D Hatzigeorgiou A Gimotty PA Weber BL Coukos G microRNAs exhibit high frequency genomic alterations in human cancer Proc Natl Acad Sci USA 2006, 103(24):9136-9141. 1474008 16754881 10.1073/pnas.0508889103
36. Meza-Zepeda LA Kresse SH Barragan-Polania AH Bjerkehagen B Ohnstad HO Namlos HM Wang J Kristiansen BE Myklebost O Array comparative genomic hybridization reveals distinct DNA copy number differences between gastrointestinal stromal tumors and leiomyosarcomas Cancer Res 2006, 66(18):8984-8993. 10.1158/0008-5472.CAN-06-1972 16982739
37. Wang J Meza-Zepeda LA Kresse SH Myklebost O M-CGH: Analysing microarray-based CGH experiments BMC bioinformatics 2004, 5:74. 446184 15189572 10.1186/1471-2105-5-74
38. Tusher VG Tibshirani R Chu G Significance analysis of microarrays applied to the ionizing radiation response Proc Natl Acad Sci USA 2001, 98(9):5116-5121. 33173 11309499 10.1073/pnas.091062498
39. Lingjaerde OC Baumbusch LO Liestol K Glad IK Borresen-Dale AL CGH-Explorer: A program for analysis of array-CGH data Bioinformatics 2005, 21(6):821-822. 10.1093/bioinformatics/bti113 15531610