-
1
-
-
0242354974
-
Horizontal gene transfer and phylogenetics
-
Philippe, H., Douady, C.J.: Horizontal gene transfer and phylogenetics. Curr. Opin. Microbiol. 6, 498-505 (2003)
-
(2003)
Curr. Opin. Microbiol
, vol.6
, pp. 498-505
-
-
Philippe, H.1
Douady, C.J.2
-
2
-
-
0036145420
-
Reconciling the many faces of lateral gene transfer
-
Lawrence, J.G., Ochman, H.: Reconciling the many faces of lateral gene transfer. Trends Microbiol. 10, 1-4 (2002)
-
(2002)
Trends Microbiol
, vol.10
, pp. 1-4
-
-
Lawrence, J.G.1
Ochman, H.2
-
3
-
-
0030994798
-
Amelioration of bacterial genomes: Rates of change and exchange
-
Lawrence, J.G., Ochman, H.: Amelioration of bacterial genomes: rates of change and exchange. J. Mol. Evol. 44, 383-397 (1997)
-
(1997)
J. Mol. Evol
, vol.44
, pp. 383-397
-
-
Lawrence, J.G.1
Ochman, H.2
-
4
-
-
0032482924
-
Molecular archaeology of the Escherichia coli genome
-
Lawrence, J.G., Ochman, H.: Molecular archaeology of the Escherichia coli genome. Proc. Natl. Acad. Sci. U S A 95, 9413-9417 (1998)
-
(1998)
Proc. Natl. Acad. Sci. U S A
, vol.95
, pp. 9413-9417
-
-
Lawrence, J.G.1
Ochman, H.2
-
5
-
-
0032173634
-
Global dinucleotide signatures and analysis of genomic heterogeneity
-
Karlin, S.: Global dinucleotide signatures and analysis of genomic heterogeneity. Curr. Opin. Microbiol. 1, 598-610 (1998)
-
(1998)
Curr. Opin. Microbiol
, vol.1
, pp. 598-610
-
-
Karlin, S.1
-
6
-
-
0032870941
-
Codon usage and lateral gene transfer in Bacillus subtilis
-
Moszer, I., Rocha, E.P., Danchin, A.: Codon usage and lateral gene transfer in Bacillus subtilis. Curr. Opin. Microbiol. 2, 524-528 (1999)
-
(1999)
Curr. Opin. Microbiol
, vol.2
, pp. 524-528
-
-
Moszer, I.1
Rocha, E.P.2
Danchin, A.3
-
7
-
-
0032804381
-
Detecting alien genes in bacterial genomes
-
Mrazek, J., Karlin, S.: Detecting alien genes in bacterial genomes. Ann. N. Y. Acad. Sci. 870, 314-329 (1999)
-
(1999)
Ann. N. Y. Acad. Sci
, vol.870
, pp. 314-329
-
-
Mrazek, J.1
Karlin, S.2
-
8
-
-
0026332291
-
Evidence for horizontal gene transfer in Escherichia coli speciation
-
Comparative Study
-
Medigue, C., Rouxel, T., Vigier, P., Henaut, A., Danchin, A.: Evidence for horizontal gene transfer in Escherichia coli speciation. J. Mol. Biol. 222, 851-856 (1991) (Comparative Study)
-
(1991)
J. Mol. Biol
, vol.222
, pp. 851-856
-
-
Medigue, C.1
Rouxel, T.2
Vigier, P.3
Henaut, A.4
Danchin, A.5
-
9
-
-
33751399556
-
Using the nucleotide substitution rate matrix to detect horizontal gene transfer
-
Hamady, M., Betterton, M.D., Knight, R.: Using the nucleotide substitution rate matrix to detect horizontal gene transfer. BMC Bioinformatics 7, 476 (2006)
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 476
-
-
Hamady, M.1
Betterton, M.D.2
Knight, R.3
-
10
-
-
26444506791
-
Highways of gene sharing in prokaryotes
-
Comparative Study
-
Beiko, R.G., Harlow, T.J., Ragan, M.A.: Highways of gene sharing in prokaryotes. Proc. Natl. Acad. Sci. U S A 102, 14332-14337 (2005) (Comparative Study)
-
(2005)
Proc. Natl. Acad. Sci. U S A
, vol.102
, pp. 14332-14337
-
-
Beiko, R.G.1
Harlow, T.J.2
Ragan, M.A.3
-
11
-
-
0141430076
-
Bacterial type III secretion systems are ancient and evolved by multiple horizontal-transfer events
-
Gophna, U., Ron, E.Z., Graur, D.: Bacterial type III secretion systems are ancient and evolved by multiple horizontal-transfer events. Gene 312, 151-163 (2003)
-
(2003)
Gene
, vol.312
, pp. 151-163
-
-
Gophna, U.1
Ron, E.Z.2
Graur, D.3
-
12
-
-
0026771340
-
Inference of horizontal genetic transfer from molecular data: An approach using the bootstrap
-
Lawrence, J.G., Hartl, D.L.: Inference of horizontal genetic transfer from molecular data: an approach using the bootstrap. Genetics 131, 753-760 (1992)
-
(1992)
Genetics
, vol.131
, pp. 753-760
-
-
Lawrence, J.G.1
Hartl, D.L.2
-
13
-
-
0036210883
-
Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores
-
Clarke, G.D.P., Beiko, R.G., Ragan, M.A., Charlebois, R.L.: Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores. J. Bacteriol. 184, 2072-2080 (2002)
-
(2002)
J. Bacteriol
, vol.184
, pp. 2072-2080
-
-
Clarke, G.D.P.1
Beiko, R.G.2
Ragan, M.A.3
Charlebois, R.L.4
-
14
-
-
0034992826
-
The closest BLAST hit is often not the nearest neighbor
-
Koski, L.B., Golding, G.B.: The closest BLAST hit is often not the nearest neighbor. J. Mol. Evol. 52, 540-542 (2001)
-
(2001)
J. Mol. Evol
, vol.52
, pp. 540-542
-
-
Koski, L.B.1
Golding, G.B.2
-
15
-
-
0036900111
-
Combining multiple data sets in a likelihood analysis: Which models are the best?
-
Pupko, T., Huchon, D., Cao, Y., Okada, N., Hasegawa, M.: Combining multiple data sets in a likelihood analysis: which models are the best?. Mol. Biol. Evol. 19, 2294-2307 (2002)
-
(2002)
Mol. Biol. Evol
, vol.19
, pp. 2294-2307
-
-
Pupko, T.1
Huchon, D.2
Cao, Y.3
Okada, N.4
Hasegawa, M.5
-
16
-
-
0038586502
-
Confidence regions and hypothesis tests for topologies using generalized least squares
-
Susko, E.: Confidence regions and hypothesis tests for topologies using generalized least squares. Mol. Biol. Evol. 20, 862-868 (2003)
-
(2003)
Mol. Biol. Evol
, vol.20
, pp. 862-868
-
-
Susko, E.1
-
19
-
-
0038486918
-
The balance of driving forces during genome evolution in prokaryotes
-
Kunin, V., Ouzounis, C.A.: The balance of driving forces during genome evolution in prokaryotes. Genome Res. 13, 1589-1594 (2003)
-
(2003)
Genome Res
, vol.13
, pp. 1589-1594
-
-
Kunin, V.1
Ouzounis, C.A.2
-
20
-
-
33646152743
-
-
Dessimoz, C., Cannarozzi, G., Gil, M., Margadant, D., Roth, A., Schneider, A., Gonnet, G.: OMA, a comprehensive, automated project for the identification of orthologs from complete genome data: Introduction and first achievements. In: McLysaght, A., Huson, D.H. (eds.) RECOMB 2005. LNCS (LNBI), 3678, pp. 61-72. Springer, Heidelberg (2005)
-
Dessimoz, C., Cannarozzi, G., Gil, M., Margadant, D., Roth, A., Schneider, A., Gonnet, G.: OMA, a comprehensive, automated project for the identification of orthologs from complete genome data: Introduction and first achievements. In: McLysaght, A., Huson, D.H. (eds.) RECOMB 2005. LNCS (LNBI), vol. 3678, pp. 61-72. Springer, Heidelberg (2005)
-
-
-
-
21
-
-
0242490943
-
Lateral gene transfer: When will adolescence end?
-
Lawrence, J.G., Hendrickson, H.: Lateral gene transfer: when will adolescence end? Mol. Microbiol. 50, 739-749 (2003)
-
(2003)
Mol. Microbiol
, vol.50
, pp. 739-749
-
-
Lawrence, J.G.1
Hendrickson, H.2
-
22
-
-
0037255072
-
The swiss-prot protein knowledgebase and its supplement trembl in 2003
-
Boeckmann, B., Bairoch, A., Apweiler, R., Blatter, M.C., Estreicher, A., Gasteiger, E., Martin, M.J., Michoud, K., O'Donovan, C., Phan, I., Pilbout, S., Schneider, M.: The swiss-prot protein knowledgebase and its supplement trembl in 2003. Nucleic Acids Res. 31, 365-370 (2003)
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
Pilbout, S.11
Schneider, M.12
-
23
-
-
21844434913
-
Evolutionary origins of genomic repertoires in bacteria
-
Lerat, E., Daubin, V., Ochman, H., Moran, N.A.: Evolutionary origins of genomic repertoires in bacteria. PLoS Biol. 3, e130 (2005)
-
(2005)
PLoS Biol
, vol.3
-
-
Lerat, E.1
Daubin, V.2
Ochman, H.3
Moran, N.A.4
-
24
-
-
26444580130
-
The cobweb of life revealed by genome-scale estimates of horizontal gene transfer
-
Ge, F., Wang, L.S., Kim, J.: The cobweb of life revealed by genome-scale estimates of horizontal gene transfer. PLoS Biol. 3, e316 (2005)
-
(2005)
PLoS Biol
, vol.3
-
-
Ge, F.1
Wang, L.S.2
Kim, J.3
-
25
-
-
33846476262
-
Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution
-
Dagan, T., Martin, W.: Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution. Proc. Natl. Acad. Sci. USA 104, 870-875 (2007)
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 870-875
-
-
Dagan, T.1
Martin, W.2
-
26
-
-
0035943134
-
On surrogate methods for detecting lateral gene transfer
-
Ragan, M.A.: On surrogate methods for detecting lateral gene transfer. FEMS Microbiol. Lett. 201, 187-191 (2001)
-
(2001)
FEMS Microbiol. Lett
, vol.201
, pp. 187-191
-
-
Ragan, M.A.1
-
27
-
-
33748277982
-
Phylogenetic analyses of cyanobacterial genomes: Quantification of horizontal gene transfer events
-
Zhaxybayeva, O., Gogarten, J.P., Charlebois, R.L., Doolittle, W.F., Papke, R.T.: Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events. Genome Res. 16, 1099-1108 (2006)
-
(2006)
Genome Res
, vol.16
, pp. 1099-1108
-
-
Zhaxybayeva, O.1
Gogarten, J.P.2
Charlebois, R.L.3
Doolittle, W.F.4
Papke, R.T.5
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