Azonexus hydrophilus sp. nov., a nifH gene-harbouring bacterium isolated from freshwater

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 4, 2008, Pages 946-951

  Chou, Jui Hsing ^a   Jiang, Sing Rong ^b   Cho, Jang Cheon ^c   Song, Jaeho ^c   Lin, Mei Chun ^b   Chen, Wen Ming ^b  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^b NATIONAL KAOHSIUNG UNIVERSITY OF APPLIED SCIENCES   (Taiwan)

^c Inha University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

NITROGENASE; RNA 16S; BACTERIAL DNA; BACTERIAL RNA; FATTY ACID; FRESH WATER; NITROGENASE REDUCTASE; OXIDOREDUCTASE;

AEROBIC BACTERIUM; ARTICLE; AZONEXUS HYDROPHILUS; BACILLUS (ROD SHAPED BACTERIUM); BACTERIAL GENE; BACTERIAL GENETICS; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; CULTURE MEDIUM; FRESHWATER ENVIRONMENT; GRAM NEGATIVE BACTERIUM; MONOPHYLY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; TYPE STRAIN; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NOMENCLATURE; RHODOCYCLACEAE; SPECIES DIFFERENCE; TAIWAN;

AZONEXUS; AZONEXUS FUNGIPHILUS; BACTERIA (MICROORGANISMS); HYDROPHILUS; MYXUS CAPENSIS; NEGIBACTERIA;

DNA, BACTERIAL; FATTY ACIDS; FRESH WATER; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PHENOTYPE; PHYLOGENY; RHODOCYCLACEAE; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY; TAIWAN; TERMINOLOGY AS TOPIC;

EID: 47249117943     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65434-0     Document Type: Article

References (29)

1. Chen, W.M., Laevens, S., Lee, T.M., Coenye, T., de Vos, P., Mergeay, M. & Vandamme, P. (2001). Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. Int J Syst Evol Microbiol 51, 1729-1735.
2. Chen, W. M., Moulin, L., Bontemps, C., Vandamme, P., Bena, G. & Boivin-Masson, C. (2003). Legume symbiotic nitrogen fixation by beta-proteobacteria is widespread in nature. J Bacteriol 185, 7266-7272.
3. Chung, Y. C., Kobayashi, T., Kanai, H., Akiba, T. & Kudo, T. (1995). Purification and properties of extracellular amylase from the hyperthermophilic archaeon Thermococccus profundus DT5432. Appl Environ Microbiol 61, 1502-1506.
4. Elliott, G. N., Chen, W. M., Chou, J. H., Wang, H. C., Sheu, S.-Y., Perin, L., Reis, V. M., Moulin, L., Simon, M. F. & other authors (2007). Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta. New Phytol 173, 168-180.
5. Embley, T. M. & Wait, R. (1994). Structural lipids of eubacteria. In Chemical Methods in Prokaryotic Systematics, pp. 121-161. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
8. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
9. Hall, T. A. (1999). BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
10. 2-fixing plant- and fungus-associated Azoarcus species by PCR based genomic fingerprints. Appl Environ Microbiol 63, 4331-4339.
11. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
12. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
13. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
14. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
15. MacFaddin, J. F. (2000). Biochemical Tests for the Identification of Medical Bacteria, 3rd edn. Baltimore, MD: Williams & Wilkins.
16. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
17. Moulin, L., Munive, A., Dreyfus, B. & Boivin-Masson, C. (2001). Nodulation of legumes by members of the β-subclass of Proteobacteria. Nature 411, 948-950.
18. Pot, B., Vandamme, P. & Kersters, K. (1994). Analysis of electrophoretic whole-organism protein fingerprints. In Chemical Methods in Prokaryotic Systematics, pp. 493-521. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
19. Powers, E. M. (1995). Efficacy of the Ryu nonstaining KOH technique for rapidly determining gram reactions of food-borne and waterborne bacteria and yeasts. Appl Environ Microbiol 61, 3756-3758.
20. Quan, Z. X., Im, W. T. & Lee, S. T. (2006). Azonexus caeni sp. nov., a denitrifying bacterium isolated from sludge of a wastewater treatment plant. Int J Syst Evol Microbiol 56, 1043-1046.
21. Reinhold, B., Hurek, T., Niemann, E. G. & Fendrik, I. (1986). Close association of Azospirillum and diazotrophic rods with different root zones of Kallar grass. Appl Environ Microbiol 52, 520-526.
22. Reinhold-Hurek, B. & Hurek, T. (2000). Reassessment of the taxonomic structure of the diazotrophic genus Azoarcus sensu lato and description of three new genera and new species, Azovibrio restrictus gen. nov., sp. nov., Azospira oryzae gen. nov., sp. nov. and Azonexus fungiphilus gen. nov., sp. nov. Int J Syst Evol Microbiol 50, 649-660.
23. Rosado, A. S., Duarte, G. F., Seldin, L. & Van Elsas, J. D. (1998). Genetic diversity of nifH gene sequences in Paenibacillus azotofixans strains and soil samples analyzed by denaturing gradient gel electrophoresis of PCR-amplified gene fragments. Appl Environ Microbiol 64, 2770-2779.
24. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for constructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
26. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
27. Xie, C.-H. & Yokota, A. (2004). Phylogenetic analyses of the nitrogen-fixing genus Derxia. J Gen Appl Microbiol 50, 129-135.
28. Young, J. P. W. (1992). Phylogenetic classification of nitrogen-fixing organisms. In Biological Nitrogen Fixation, pp. 43-86. Edited by G. Stacey, R. H. Burris & H. J. Evans. New York: Chapman & Hall.
29. Zani, S., Mellon, M. T., Collier, J. L. & Zehr, J. P. (2000). Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR. Appl Environ Microbiol 66, 3119-3124.