Population genetic structure of sea cucumber, Stichopus japonicus in Korea using microsatellite markers

Aquaculture Research

Volumn 39, Issue 10, 2008, Pages 1038-1045

  Kim, Mi Jung ^a   Choi, Tae Jin ^a,b   An, Hye Suck ^a  

^a National Fisheries Research and Development Institute (NFRDI)   (South Korea)

^b Pukyong National University   (South Korea)

Author keywords

Genetic relationship; Microsatellite; Sea cucumber; Stichopus japonicus

Indexed keywords

ALLELE; CLUSTER ANALYSIS; COMMERCIAL SPECIES; ECHINODERM; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; HETEROZYGOSITY; PHYLOGENETICS; POPULATION GENETICS; SUBPOPULATION;

ASIA; EURASIA; FAR EAST; KOREA;

HOLOTHUROIDEA; STICHOPUS; STICHOPUS JAPONICUS;

EID: 47249091786     PISSN: 1355557X     EISSN: 13652109     Source Type: Journal    
DOI: 10.1111/j.1365-2109.2008.01962.x     Document Type: Article

References (27)

1. Addison J.A. Hart M.W. (2004) Analysis of population genetic structure of the green sea urchin (Strongylocentrotus droebachiensis) using microsatellites. Marine Biology 144, 243 251.
2. Bing Y., Xiaoli H., Zhenmin B., Wei L. Jingjie H. (2007) Genetic variation in two sea cucumber (Apostichopus japonicus) stocks revealed by ISSR markers. Chinese Journal of Oceanology and Limnology 25, 91 96.
3. Cavalli-Sforza L.L. Edwards A.W.F. (1967) Phylogenetic analysis: models and estimation procedures. American Journal of Human Genetics 19, 233 257.
4. Chen L. Li Q. (2007) Identification and characterization of microsatellite markers derived from expressed sequence tags of the sea cucumber Stichopus japonicus. Molecular Ecology Notes 7, 1057 1059.
5. Choe S. Oshima Y. (1961) On the morphological and ecological differences between two commercial forms, "green" and "red", of the Japanese common sea cucumber, Stichopus japonicus SELENKA. Nippon Suisan Gakkaishi 27, 97 105.
6. DeWoody J.A. Avise J.C. (2000) Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. Journal of Fish Biology 56, 461 473.
7. Dufresne F., Bourget E. Bernatchez L. (2002) Differential patterns of spatial divergence in microsatellite and allozyme alleles: further evidence for locus-specific selection in the acorn barnacle, Semibalanus balanoides? Molecular Ecology 11, 113 123.
8. Felsenstein J. (1989) phylip - phylogeny inference package (version 3.2). Cladistics 5, 164 166.
9. Goudet J. (1995) fstat: a computer program to calculate F-statistics. The Journal of Heredity 86, 485 486.
10. Guo S.W. Thompson E.A. (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48, 361 372.
11. Hamrick J.L. Godt M.J.W. (1996) Conservation genetics of endemic plant species. In : Conservation Genetics: Case Histories from Nature (ed. by J.C. Avise J.L. Hamrick pp. 281 304. Chapman and Hall, New York, NY, USA.
12. Herbinger C.M., Vercaemer B.M., Gjetvaj B. O'Dor R.K. (1998) Absence of genetic differentiation amongst geographically close sea scallop (Placopecten magellanicus) beds using cDNA and microsatellite markers. Journal of Shellfish Research 17, 117 122.
13. Kanno M. Kijima A. (2003) Genetic differentiation among three color variants of Japanese sea cucumber Stichopus japonicus. Fisheries Science 69, 806 812.
14. Kanno M., Li Q. Kijima A. (2005) Isolation and characterization of twenty microsatellite loci in the Japanese sea cucumber Stichopus japonicus. Marine Biotechnology 7, 179 183.
15. Liu Z.J. Cordes J.F. (2004) DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238, 1 37.
16. Nei M. (1987) Molecular Evolutionary Genetics. Columbia University Press, New York, NY, USA, pp. 287 326.
17. O'connell M. Wright J.M. (1997) Microsatellite DNA in fishes. Reviews in Fish Biology and Fisheries 7, 331 363.
18. Perez de Rosas A.R., Segura E.L. Garcia B.A. (2007) Microsatellite analysis of genetic structure in natural Triatoma infestans (Hemiptera: Reduviidae) populations from Argentina: its implication in assessing the effectiveness of Chagas' disease vector control programmes. Molecular Ecology 16, 1401 1412.
19. Raymond M. Rousset F. (1995) genepop version 3.4: population genetics software for exact tests and ecumenicism. The Journal of Heredity 86, 248 249.
20. Rousset F. Raymond M. (1995) Testing heterozygote excess and deficiency. Genetics 140, 1413 1419.
21. Ruttern M.J.M., Komen H., Deerenberg R.M., Siwek M. Bovenhuis H. (2004) Genetic characterization of four strains of Nile tilapia (Oreochromis niloticus L.) using microsatellite markers. Animal Genetics 35, 93 97.
22. Schneider S., Roessli D. Excoffier L. (2000) Arlequin: A Software for Population Genetic Data. User Manual Version 2.000. Genetics and Biometry Laboratory, University of Geneva, Geneva, Switzerland.
23. Sneath P.H.A. Sokal R.R. (1973) Numerical Taxonomy - the Principles and Practice of Numerical Classification. W. H. Freeman, San Francisco, USA.
24. Takezaki N. Nei M. (1996) Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144, 389 399.
25. Weir B.S. Cockerham C.C. (1984) Estimating F-statistics for the analysis of population structure. Evolution 38, 1358 1370.
26. Wright J.M. Bentzen P. (1994) Microsatellites: genetic markers for the future. Reviews in Fish Biology and Fisheries 4, 384 388.
27. Zhang X.-G., Tong J.-G. Xiong B.-X. (2006) Applications of microsatellite markers in studies of genetics and breeding of fish. Chinese Journal of Agricultural Biotechnology 3, 83 87.