New insights into the alternative D-glucarate degradation pathway

Journal of Biological Chemistry

Volumn 283, Issue 23, 2008, Pages 15638-15646

  Aghaie, Asadollah ^a   Lechaplais, Christophe ^a   Sirven, Peggy ^a   Tricot, Sabine ^a   Besnard Gonnet, Marielle ^a   Muselet, Delphine ^a   De Berardinis, Véronique ^a   Kreimeyer, Annett ^a   Gyapay, Gabor ^a   Salanoubat, Marcel ^a   Perret, Alain ^a  

^a Genoscope   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOLOGY; BIOCHEMISTRY; DEGRADATION; ESCHERICHIA COLI; GENES; TRANSCRIPTION;

ACINETOBACTER; BACILLUS SUBTILIS; BIOCHEMICAL INFORMATIONS; CARBON SOURCES; DEGRADATION PATHWAYS; E. COLI; ENZYMATIC PATHWAYS; EXPRESSION ANALYSES; GENE DELETION MUTANTS; GLUCARATE; HIGH THROUGHPUTS; IN VITRO; KETOGLUTARATE; KINETIC CHARACTERIZATIONS; PROTEIN PURIFICATIONS; PSEUDOMONAS SPECIES; SEMIALDEHYDE DEHYDROGENASES; SEQUENCED GENOMES; SOIL BACTERIUM;

BIODEGRADATION;

5 KETO 4 DEOXYGLUCARATE DEHYDRATASE; ALDEHYDE DEHYDROGENASE; ALPHA KETOGLUTARATE SEMIALDEHYDE DEHYDROGENASE; GLUCARATE DEHYDRATASE; HYDROLYASE; SACCHARIC ACID; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; GLUTARIC ACID DERIVATIVE; RECOMBINANT PROTEIN;

ACINETOBACTER; ARTICLE; CARBOHYDRATE METABOLISM; CONTROLLED STUDY; DEHYDROGENATION; ENZYME ACTIVITY; ENZYME PURIFICATION; ESCHERICHIA COLI; GENE CLUSTER; GENE EXPRESSION; GENE FUNCTION; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; BACTERIAL GENOME; BIOSYNTHESIS; ENZYMOLOGY; GENE DELETION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PHYSIOLOGY;

ACINETOBACTER BAYLYI; BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA; PSEUDOMONAS;

ACINETOBACTER; BACTERIAL PROTEINS; GENE DELETION; GENE EXPRESSION REGULATION, BACTERIAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENOME, BACTERIAL; GLUTARATES; HYDRO-LYASES; RECOMBINANT PROTEINS; TRANSCRIPTION, GENETIC;

EID: 47049103143     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M800487200     Document Type: Article

References (29)

1. Barbe, V., Vallenet, D., Fonknechten, N., Kreimeyer, A., Oztas, S., Labarre, L., Cruveiller, S., Robert, C., Duprat, S., Wincker, P., Ornston, L. N., Weissenbach, J., Marliere, P., Cohen, G. N., and Medigue, C. (2004) Nucleic Acids Res. 32, 5766-5779
2. de Berardinis, V., Vallenet, D., Castelli, V., Besnard, M., Pinet, A., Cruaud, C., Samair, S., Lechaplais, C., Gyapay, G., Richez, C., Durot, M., Kreimeyer, A., Le Fèvre, L., Schächter, V., Pezo, V., Döring, V., Scarpelli, C., Médigue, C., Cohen, G. N., Marlière, P., Salanoubat, M., and Weissenbach, J. (2008) Mol. Syst. Biol. 4, 174
3. Trudgill, P. W., and Widdus, R. (1966) Nature 211, 1097-1099
4. Blumenthal, H. J., and Fish, D. C. (1963) Biochem. Biophys. Res. Commun. 11, 239-243
5. Kay, H. D. (1926) Biochem. J. 20, 321-329
6. Gulick, A. M., Hubbard, B. K., Gerlt, J. A., and Rayment, I. (2000) Biochemistry 39, 4590-4602
7. Hubbard, B. K., Koch, M., Palmer, D. R., Babbitt, P. C., and Gerlt, J. A. (1998) Biochemistry 37, 14369-14375
8. Hosoya, S., Yamane, K., Takeuchi, M., and Sato, T. (2002) FEMS Microbiol. Lett. 210, 193-199
9. Koo, P. H., and Adams, E. (1974) J. Biol. Chem. 249, 1704-1716
10. Sharma, B. S., and Blumenthal, H. J. (1973) J. Bacteriol. 116, 1346-1354
11. Jeffcoat, R., Hassall, H., and Dagley, S. (1969) Biochem. J. 115, 977-983
12. Jeffcoat, R., Hassall, H., and Dagley, S. (1969) Biochem. J. 115, 969-976
13. Dagley, S., and Jeffcoat, R. (1975) Methods Enzymol. 42, 272-276
14. Hassall, H., Jeffcoat, R., and Dagley, S. (1969) Biochem. J. 114, 78P-79P
15. Watanabe, S., Yamada, M., Ohtsu, I., and Makino, K. (2007) J. Biol. Chem. 282, 6685-6695
16. Metzgar, D., Bacher, J. M., Pezo, V., Reader, J., Doring, V., Schimmel, P., Marliere, P., and de Crecy-Lagard, V. (2004) Nucleic Acids Res. 32, 5780-5790
17. Macgee, J., and Doudoroff, M. (1954) J. Biol. Chem. 210, 617-626
18. Kreimeyer, A., Perret, A., Lechaplais, C., Vallenet, D., Medigue, C., Salanoubat, M., and Weissenbach, J. (2007) J. Biol. Chem. 282, 7191-7197
19. Gulick, A. M., Palmer, D. R., Babbitt, P. C., Gerlt, J. A., and Rayment, I. (1998) Biochemistry 37, 14358-14368
20. Watanabe, S., Kodaki, T., and Makino, K. (2006) J. Biol. Chem. 281, 28876-28888
21. Cobessi, D., Tete-Favier, F., Marchal, S., Azza, S., Branlant, G., and Aubry, A. (1999) J. Mol. Biol. 290, 161-173
22. Adams, E., and Rosso, G. (1967) J. Biol. Chem. 242, 1802-1814
23. Eisenstein, E. (1991) J. Biol. Chem. 266, 5801-5807
24. Nelson, K. E., Weinel, C., Paulsen, I. T., Dodson, R. J., Hilbert, H., Martins dos Santos, V. A., Fouts, D. E., Gill, S. R., Pop, M., Holmes, M., Brinkac, L., Beanan, M., DeBoy, R. T., Daugherty, S., Kolonay, J., Madupu, R., Nelson, W., White, O., Peterson, J., Khouri, H., Hance, I., Chris Lee, P., Holtzapple, E., Scanlan, D., Tran, K., Moazzez, A., Utterback, T., Rizzo, M., Lee, K., Kosack, D., Moestl, D., Wedler, H., Lauber, J., Stjepandic, D., Hoheisel, J., Straetz, M., Heim, S., Kiewitz, C., Eisen, J. A., Timmis, K. N., Dusterhoft, A., Tummler, B., and Fraser, C. M. (2002) Environ. Microbiol. 4, 799-808
25. Monod, J., Wyman, J., and Changeux, J. P. (1965) J. Mol. Biol. 12, 88-118
26. Koshland, D. E., Jr., Nemethy, G., and Filmer, D. (1966) Biochemistry 5, 365-385
27. Koshland, D. E. (2002) Bioorg. Chem. 30, 211-213
28. Jacob, F., and Monod, J. (1961) J. Mol. Biol. 3, 318-356
29. Adams, B., and Rosso, G. (1966) Biochem. Biophys. Res. Commun. 23, 633-640