Molecular epidemiology of the human group a Rotavirus in the Paraná State, Brazil

Brazilian Archives of Biology and Technology

Volumn 51, Issue 2, 2008, Pages 287-294

  Stadinicki Dos Santos, Jucélia ^a   Fernandes Alfieri, Alice ^b   Gagliardi Leite, José Paulo ^c   Skraba, Irene ^d   Alcindo Alfieri, Amauri ^b  

^a FEDERAL UNIVERSITY OF PARANÁ   (Brazil)

^b STATE UNIVERSITY OF LONDRINA   (Brazil)

^c INSTITUTO OSWALDO CRUZ   (Brazil)

^d Paraná s Central Laboratory LACEN PR   (Brazil)

Author keywords

Diagnostic; Diarrhea; Genotypes; PAGE; Rotavirus; RT PCR

Indexed keywords

HUMAN ROTAVIRUS A; ROTAVIRUS; ROTAVIRUS A;

EID: 46949110473     PISSN: 15168913     EISSN: 15168913     Source Type: Journal    
DOI: 10.1590/s1516-89132008000200008     Document Type: Article

References (37)

1. Alfieri, A. A.; Leite, J. P. G.; Nakagomi, O.; Kaga, E.; Woods, P.; Glass, R. I. and Gentsch, J. R. (1996), Characterization of human rotavirus genotype P[8]G5 from Brazil by probe hybridization and sequence. Archives of Virology, 141, 2353-2364.
2. Alfieri, A. F.; Alfieri, A. A.; Barreiros, M. A.; Leite, J. P. G. and Richtzenhain, L. J. (2004), G and P genotypes of group A rotavirus circulating in calves in Brazil, 1996-1999. Veterinary Microbiology, 99: (3-4), 167-173.
3. Boom, R.; Sol, C. J.; Salimans, M. M.; Jansen, C.L.; Wertheim-VAN Dillen, P. M. and VAN DER Noordaa, J. (1990), Rapid and simple method for purification of nucleic acids. Journal of Clinical Microbiology, 28: (3), 495-503.
4. Cardoso, D. D.; Soares, C. M.; Souza, M. B.; Azeredo, M. S.; Martins, R. M.; Queiroz, D. A.; Brito, W. M.; Mumford, V.; Racz, M. L. and Queiroz, D. A. (2003), Epidemiological Features of Rotavirus Infection in Goiânia, Goiás, Brazil, from 1986 to 2000. Memórias do Instituto Oswaldo Cruz, 98: (1), 25-29.
5. Cicirello, H. G.; Das, B. K.; Gupta, A.; Bhan, M. K.; Gentsch, J. R.; Kumar, R. and Glass, R. I. (1994), High prevalence of rotavirus infection among neonates born at hospitals in Delhi, India: predisposition of newborns for infection with unusual rotavirus. Pediatrics Infectious Diseases Journal, 13, 720-724.
6. Coluchi, N.; Munford, V.; Manzur, J.; Vazquez, C.; Escobar, M.; Weber, E.; Marmol, P. and Racz, M. L. (2002), Detection, subgroup specificity, and genotype diversity of Rotavirus strains in children with acute diarrhea in Paraguay. Journal of Clinical Microbiology, 40: (5), 1709-1714.
7. Cunliffe, N. A.; Gondwe, J.S.; Broadhead, R. L.; Molyneaux, M. E.; Woods, P. A.; Bresee, J. S.; Glass, R. I.; Gentsch, J. R. and Hart, C. A. (1999), Rotavirus G and P types in children with acute diarrhea in Blantyre, Malawi, from 1997-1998: predominance of a novel P [6] G8 strain. Journal of Medical Virology, 57: (3), 308-312.
8. Das, B. K.; Gentsch, J. R.; Cicirello, H. G.; Woods, P. A.; Gupta, A.; Ramachandran, M.; Kumar, R.; Bhan, M. K. and Glass, R. I. (1994) Characterization of rotavirus strains from newborns in New Dehli, India. Journal of Clinical Microbiology, 32, 1820-1822.
9. Desselberger, U. (2000), Emerging and re-emerging infectious diseases. The Journal of Infection, 40: (1), 3-15.
10. Fang, Z. Y.; Yang, H.; Qi, J.; Zhang, J.; Sun, L. W.; Tang, J. Y.; Ma, L.; Du, Z. Q.; He, A. H.; Xie, J. P.; Lu, Y. Y.; Ji, Z. Z.; Zhu, B. Q.; Wu, H. Y.; Lin, S. E.; Xie, H. P.; Griffin, D. D.; Ivanoff, B.; Glass, R. I. and Gentsch, J. R. (2002), Diversity of rotavirus strains among children with acute diarrhea in China: 1998-2000 surveillance study. Journal of Clinical Microbiology, 40, 1875-1878.
11. Gentsch, J. R.; Glass, R. L; Woods, P.; Gouvea, V.; Gorziglia, M.; Flores, J.; Das, B. K. and Bhan, M. K. (1992), Identification of group A rotavirus gene 4 types by polymerase chain reaction. Journal of Clinical Microbiology, 30, 1365-1373.
12. Gentsch, J. R.; Woods, P. A.; Ramachandran, M.; Das, B. K.; Leite, J. P. G.; Alfieri, A. A.; Kunmar, R.; Bhan, M. K. and Glass, R. I. (1996), Review of G and P typing results from a global collection of rotavirus strains: implications for vaccine development. Journal of Infectious Diseases, 174: (1), S30-S36.
13. Gonzales-Ioza, M. R.; Polanco-Marin, G. G. and Puerto-Sous, M. (2000), Identificaçã;o de rotavírus associado ao sorotipo G2 em Yucatan, México. Revista da Sociedade Brasileira de Medicina Tropical, 33: (6), 553-557.
14. Gouvêa, V.; Santos, N. and Timenetsky, M. C. (1994a) VP4 typing of bovine and porcine group A rotaviruses by PCR. Journal of Clinical Microbiology, 32, 1333-1337.
15. Gouvea, V.; Santos, N. and Timenetsky, M. C. (1994b), Identification of bovine and porcine rotavirus G types by PCR. Journal of Clinical Microbiology, 32, 1338-1340.
16. Herring, A. J.; Inglis, N. F.; Ojeh, C. K.; Saodgrass, D. R. and Menzies, J. D. (1982), Rapid diagnosis of rotavirus infection by direct detection of viral nucleic acid in silver-stained polyacrylamide gels. Journal of Clinical Microbiology, 16, 473-477.
17. Jain, V.; Das, B. K.; Bhan, M. K.; Glass, R. I. and Gentsch, J. R. (2001), Great diversity of group A rotavirus strains and high prevalence of mixed rotavirus infection in India. Journal of Clinical Microbiology, 39, 3524-3529.
18. Kapikian, A. Z.; Hoshino, Y. and Chanock, R. M. (2001), Rotaviruses. In- Fields Virology, eds. Knipe, D. M. and Howlley, P. M., 4th edn. Lippincott Williams & Wilkins, Philadelphia, pp. 1787-1833.
19. Kosek, M.; Bern, C. and Guerrant, R. L. (2003), The magnitude of the global burden of diarrheal disease from studies published 1992-2000. Bulletin of the World Health Organization, 81:(3), 197-204.
20. Leite. J. P. G.; Alfieri, A. A.; Woods, P. A.; Glass, R. I. and Gentsch, J. R. (1996), Rotavirus G and P types circulating in Brazil: characterization by RT-PCR. probe hybridization, and sequence analysis. Archives of Virology, 141, 2365-2374.
21. Linhares, A. C.; Gabbay, Y. B.; Mascarenhas, J. D.; Freitas, R. B.; Flewett, T. H. and Beards, G. M. (1988), Epidemiology of rotavirus subgroups and serotypes in Belem, Brazil: a three-year study. Annales del Institut Pasteur/Virologie, 139, 89-99.
22. Linhares, A. C.; Gabbay, Y. B.; Mascarenhas, J. D.; Freitas, R. B.; Oliveira, C. S.; Bellesi, N.; Monteiro, T. A.; Lins-Lainson, Z.; Ramos, F. L. and Valent, A. S. (1996), Immunogenicity, safety and efficacy of rhesus-human, reassortant rotavirus vaccine in Belém, Brazil. Bulletin of the World Health Organization, 74, 491-500.
23. Mascarenhas, J. D.; Arias, C. F.; Noriega, L. P.; Lopez, S.; Gusmão, R. H.; Gabbay, Y. B. and Linhares, A. C. (1997), Characterization of Rotavirus strains with unusual electrophoretic profiles. Memórias do Instituto Oswaldo Cruz, 92: (6), 771-774.
24. Mascarenhas, J. D.; Gusmáo, R. H.; Barardi, C. R.; Paiva, F. L.; Simões, C. O.; Gabbay, Y. B.; Monteiro, T. A. and Linhares, A. C. (1999), Characterization of rotavirus P genotypes circulating among paediatric inpatients in Northern Brazil. Revista do Instituto de Medicina Tropical de São Paulo, 41: (3), 165-170.
25. Matsui, S. M.; Offit, P. A.; Vo, P. T.; Mackow, E. R.; Benfield, D. A.; Shaw, R. D.; Padilha-Noriega, L. and Greenberg, H. B. (1989), Passive protection against rotavirus-induced diarrhea by monoclonal antibodies to the heterotypic neutralization domain of VP7 and the VP8 fragment of VP4. Journal of Clinical Microbiology, 27, 780-782.
26. Parashar, U. D.; Bresee, J. S.; Gentsch, J. R. and Glass, R. I. (1998), Rotavirus. Emerging Infectious Diseases, 4: (4) 561-570.
27. Parashar, U. D.; Hummelman, E. G.; Bresee, J. S.; Miller, A. M. and Glass, R.I. (2003), Global illness and deaths caused by rotavirus disease in children. Emerging Infectious Diseases, 9: (5), 565-571.
28. Pereira, H. G.; Azeredo, R. S.; Leite, J. P. G.; Candeias, J. A.; Racz, M. L.; Linhares, A. C.; Gabbay, Y. B. and Trabulsi, J. R. (1983), Electrophoretic study of the genome of human rotaviruses from Rio de Janeiro, São Paulo and Pará. The Journal of Hygiene, 90: 117-125.
29. Pereira, H. G.; Azeredo, R. S.; Leite, J. P. G.; Andrade, Z. P. and Castro, L. (1985), A combined enzyme immunoassay for rotavirus and adenovirus. Journal of Virological Methods, 10: 21-28.
30. Pereira, H. G.; Linhares, A. C.; Candeias, J. A. and Glass, R. I. (1993), National laboratory surveillance of viral agents of gastroenteritis in Brazil. Bulletin of the Pan American Health Organization, 27, 224-233.
31. Pesavento, J. B.; Estes, M. K. and Prasad, B. V. (2003), Structural organization of the genome in rotavirus. In-Viral Gastroenteritis, eds. Desselberger U, Gray J. 1st edn, v.9. Elsiever Science, Amsterdam, pp. 115-118.
32. Rahman, M.; Matthijnssens, J.; Nahar, S.; Podder, G.; Sack, D. A.; Azim, T. and Ranst, M. V. (2005), Characterization of a Novel P[25],G11 Human Group A Rotavirus. Journal of Clinical Microbiology. 43:(7), 3208-3212.
33. Rao, C. D.; Gowda, K. and Reddy, B. S. (2000), Sequence analysis of VP4 and VP7 genes of nontypeable strains identifies a new pair of outer capsid proteins representing novel P and G genotypes in bovine rotaviruses. Virology, 276: 104-113.
34. Ray, P. G. and Kelkar, S. D. (2004), Prevalence of neutralizing antibodies agains different rotavirus serotypes in children with severe rotavirus-induced diarrhea and their mothers. Clinical Diagnostic Laboratory Immunology, 11: (1), 186-194.
35. Santos, N. and Hoshino, Y. (2005), Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Reviews in Medical Virology, 15: (1), 29-56.
36. Sattar, S. A.; Ijaz, M. K.; Johnson-Lussenburg, C. M. and Springthorpe, V. S. (1984), Effect of relative humidity on the airborne survival of rotavirus SA11. Applied and Environmental Microbiology, 47, 879-881.
37. Villena, C.; El-Senousy, W. M.; Abad, F. X.; Pinto, R. M. and Bosch, A. (2003), Group A Rotavirus in sewage samples from Barcelona and Cairo: Emergence of unusual genotypes. Applied and Environmental Microbiology, 69: (7), 3919-3923.