Development of a SCAR marker to track canola resistance against blackleg caused by Leptosphaeria maculans pathogenicity group 3

Plant Disease

Volumn 92, Issue 6, 2008, Pages 903-908

  Dusabenyagasani, M ^a   Fernando, W G D ^a  

^a UNIVERSITY OF MANITOBA   (Canada)

Author keywords

SRAP

Indexed keywords

PLANTS (BOTANY);

B. NAPUS; BRASSICA NAPUS; HOST RESISTANCE; LEPTOSPHAERIA MACULANS; MOLECULAR MARKERS; SEQUENCE CHARACTERIZED AMPLIFIED REGION (SCAR) MARKER;

HEALTH;

ARABIDOPSIS; ARABIDOPSIS THALIANA; BRASSICA NAPUS; BRASSICA NAPUS VAR. NAPUS; LEPTOSPHAERIA MACULANS;

EID: 46849122486     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS-92-6-0903     Document Type: Article

References (60)

1. Aljanabi, S. M., and Martinez, I. 1997. Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res. 25:4692-4693.
2. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
3. Ananga, A. O., Cebert, E., Soliman, K., Kantey, R., Pacumbaba, R. P., and Konan, K. 2006. RAPD markers associated with resistance to blackleg disease in Brassica species. Afr. J. Biotechnol. 5:2041-2048.
4. Ansan-Melayah, D., Balesdent, M. H., Buée, M., and Rouxel, T. 1995. Genetic characterization of AvrLm1, the first avirulence gene of Leptosphaeria maculans. Phytopathology 85:1525-1529.
5. Ansan-Melayah, D., Balesdent, M. H., Delourme, R., Pilet, M. L., Tanguy, X., Renard, M., and Rouxel, T. 1998. Genes for race-specific resistance against blackleg disease in Brassica napus L. Plant Breed. 117:373-378.
6. Balesdent, M. H., Attard, A., Kuhn, M. L., and Rouxel, T. 2002. Avirulence genes in the phytopathogenic fungus Leptosphaeria maculans. Phytopathology 92:1122-1133.
7. Balesdent, M. H., Barbetti, M. J., Li, H., Sivasithamparam, K., Gout, L., and Rouxel, T. 2005. Analysis of Leptosphaeria maculans race structure in a worldwide collection of isolates. Phytopathology 95:1061-1071.
8. Bansal, V. K., Kharbanda, P. D., Stringam, G. R., Thiagarajah, M. R., and Tewari, J. P. 1994. A comparison of greenhouse and field screening methods for blackleg resistance in double haploid lines of Brassica napus. Plant Dis. 78:276-281.
9. Bassett, C. L., Nickerso, M. L., Farell, R. E., Jr., and Harrison, M. 2004. Multiple transcripts of a gene for a leucine-rich repeat receptor kinase from morning glory (Ipomea nil) originate from different TATA boxes in a tissue-specific manner. Mol. Gen. Genomics 271:752-760.
10. Bonham, S., Staal, J., Thomma, B., Wang, M. L., and Dixelius, C. 2004. Characterization of an Arabidopsis-Leptosphaeria maculans pathosystem: Resistance partially requires camalexin biosynthesis and is independent of salicylic acid, ethylene, and jasmonic acid signaling. Plant J. 37:9-20.
11. Bradley, C. A., Parks, P. S., Chen, Y., and Fernado, W. G. D. 2005. First report of pathogenicity groups 3 and 4 of Leptosphaeria maculans on canola in North Dakota. Plant Dis. 89:776.
12. Brueggeman, R., Drader, T., and Kleinholfs, A. 2006. The barley serine/threonine kinase gene RPg1 providing resistance to stem rust belongs to a gene family with five other members encoding kinase domains. Theor. Appl. Genet. 113:1147-1158.
13. Chen, Y., and Fernando, W. G. D. 2005. First report of canola blackleg caused by pathogenicity group 4 of Leptosphaeria maculans in Manitoba. Plant Dis. 89:339.
14. Chen, Y., and Fernando, W. G. D. 2006. Prevalence of pathogenicity groups of Leptosphaeria maculans in Western Canada and North Dakota, USA. Can. J. Plant Pathol. 28:533-539.
15. Chèvre, A. M., Eber, F., This, P., Barret, P., Tanguy, X., Brun, H., Delseny, M., and Renard, M. 1996. Characterization of Brassica nigra chromosomes and of blackleg resistance in B. napus-B. nigra addition lines. Plant Breed. 115:113-118.
16. Crouch, J. H., Lewis, B. G., and Mithen, R. F. 1994. The effect of a genome substitution on the resistance of Brassica napus to infection by Leptosphaeria maculans. Plant Breed. 112:265-278.
17. Delourme, R., Pilet-Nayel, M. L., Archipiano, M., Horvais, R., Tangy, X., Rouxel, T., Brun, H., Renard, M., and Badesdent, M. H. 2004. A cluster of major specific resistance genes to Leptosphaeria maculans in Brassica napus. Phytopathology 94:578-583.
18. Dion, Y., Gugel, R. K., Rakow, G. F. W., Seguin-Swartz, G., and, Landry, B. S. 1995. RFLP mapping of resistance to the blackleg disease [causal agent, Leptosphaeria maculans (Desm.) Ces. et de Not] in canola (Brassica napus). Theor. Appl. Genet. 91:1190-1194.
19. Fernando, W. G. D., and Chen, Y. 2003. First report on the presence of Leptosphaeria maculans pathogenicity group-3, the causal agent of blackleg of canola in Manitoba. Plant Dis. 87:1268.
20. Ferreira, M. E., Rimmer, S. R., Williams, P. H., and Osborn, T. C. 1995. Mapping loci controlling Brassica napus resistance to Leptosphaeria maculans under different screening conditions. Phytopathology 85:213-217.
21. Gororo, N., Salisbury, P., and Marcroft, S. 2004. Dunkeld and Rainbow: A tale of two Victorian canola varieties. Proc Int. Crop Sci. Congr. 4th, Brisbane, Australia, Sept. 26-Oct. 1, 2004. http://www.cropscience.org.au/ icsc2004/poster/3/7/3/975_gororo. htm.
22. Hardie, D. G. 1999. Plant protein serine/threonine kinases: Classification and functions. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50:97-131.
23. Koch, E., Song, K., Osborn, T. C., and Williams, P. H. 1991. Relationship between pathogenicity and phylogeny based on restriction fragment length polymorphism in Leptosphaeria maculans. Mol. Plant-Microbe Interact. 4:341-349.
24. Kutcher, H. R., Van den Berg, C. G. J., and Rimmer, S. R. 1992. Variation in pathogenicity of Leptosphaeria maculans on Brassica spp. based on cotyledon and stem reactions. Can. J. Plant Pathol. 15:253-258.
25. Lander, E., Green, P., Abrahamson, J., Barlow, A., Daley, M., Lincoln, S., and Newburg, L. 1987. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181.
26. Li, C. X., and Cowling, W. A. 2003. Identification of a single dominant allele for resistance to blackleg in Brassica napus Surpass 400. Plant Breed. 122:485-488.
27. Li, H., Barbetti, M. J., and Sivasithamparam, K. 2005. Hazard from reliance on cruciferous hosts as sources of major gene-based resistance for managing blackleg (Leptosphaeria maculans) disease. Field Crops Res. 91:185-198.
28. Li, G., and Quiros, C. F. 2001. Sequence-related amplified polymorphism (SRAP), a new system based on a simple PCR reaction: Its application to mapping and gene tagging in Brassica. Theor. Appl. Genet. 103:455-461.
29. Lincoln, S., Daly, M., and Lander, E. 1992. Constructing genetic maps with MAPMAKER/EXP 3.0. Whitehead Institute Technical Report. 3rd ed. Available online.
30. Liu, G.-Z., Pi, L.-Y., Walker, C. J., Ronald, P. C., and Song, W.-Y. 2002. Biochemical characterization of the kinase domain of the rice disease resistance receptor-like kinase XA21. J. Biol. Chem. 277:20264-20269.
31. Loh, Y.-T., and Martin, G. B. 1995. The Pto bacterial resistance gene and the Fen insecticide sensitivity gene encode functional protein kinases with serine/threonine specificity. Plant Physiol 108:1735-1739.
32. Mailer, R. J., Wratten, N., and Vonarx, M. 1997. Genetic diversity amongst Australian canola varieties determined by random amplified polymorphic DNA. Aust. J. Exp. Agric. 37:793-800.
33. Mayerhofer, R., Bansal, V. K., Thiagarajah, M. R., Stringam, G. R., and Good, A. G. 1997. Molecular mapping of resistance to Leptosphaeria maculans in Australian varieties of Brassica napus. Genome 40:294-301.
34. Mayerhofer, R., Wilde, K., Mayerhofer, M., Lydiate, D., Bansal, V. K., Good, A. G., and Parkin, I. A. P. 2005. Complexities of chromosome landing in a high duplicated genome: Toward map-based cloning of a gene controlling blackleg resistance in Brassica napus. Genetics 171:1977-1988.
35. McNabb, W. M., Van Den Berg, C. G. J., and Rimmer, S. R. 1993. Comparison of inoculation methods for selection of plant resistance to Leptosphaeria maculans in Brassica napus. Can. J. Plant Sci. 73:1199-1207.
36. Mengistu, A., Rimmer, S. R., Koch, E., and Williams, P. H. 1991. Pathogenicity grouping of isolates of Leptosphaeria maculans on Brassica napus varieties and their disease reaction profiles on rapid-cycling brassicas. Plant Dis. 75:1279-1282.
37. Michelmore, R. W., Paran, I., and Kesseli, R. V. 1991. Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. USA 88:9828-9832.
38. Narusaka, Y., Narusaka, M., Seki, M., Umezawa, T., Ishida, J., Nakajima, M., Enju, A., and Shinozaki, K. 2004. Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: Analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray. Plant Mol. Biol. 55:327-342.
39. Newman, P. L., and Bailey, D. J. 1987. Screening for resistance to canker (Leptosphaeria maculans) in winter oilseed rape (Brassica napus spp. oleifera). Plant Pathol. 36:346-354.
40. Nicholas, K. B., Nicholas, H. B., Jr., and Deerfield, D. W., II. 1997. GeneDoc: Analysis and Visualization of Genetic Variation, EMBNEW. NEWS 4:14.
41. Nirmala, J., Brueggerman, R., Maier, C., Clay, C., Rostoks, N., Kannangara, C. G., von Wettstein, D., Steffenson, B. J., and Kleinhofs, A. 2006. Subcellular localization and functions of barley stem rust resistance receptor-like serine/threonine-specific protein kinase Rpg1. Proc. Natl. Acad. Sci. USA 103:7518-7523.
42. Pang, E. C. K., and Halloran, G. M. 1996. The genetics of adult-plant blackleg (Leptosphaeria maculans) resistance from Brassica juncea in B. napus. Theor. Appl. Genet. 92:382-387.
43. Parkin, I. A., Sharpe, A. G., Keith, D. J., and Lydiate, D. J. 1995. Identification of the A and C genomes of the amphidiploid Brassica napus (oilseed rape). Genome 38:1122-1131.
44. Pongam, P., Osborn, T. C., and Williams, P. H. 1998. Genetic analysis and identification of amplified fragment length polymorphism marker linked to alm1 avirulence gene of Leptosphaeria maculans. Phytopathology 88:1068-1072.
45. Rimmer, S. R. 2006. Resistance genes to Leptosphaeria maculans in Brassica napus. Can. J. Plant Pathol. 28:S288-S297.
46. Rimmer, S. R., Borhan, M. H., Zhu, B., and Somers, D. 1999. Mapping resistance genes in Brassica napus to Leptosphaeria maculans. Proc. Int. Rapeseed Congr., 10th, Canberra, Australia. p. 262.
47. Rimmer, S. R., and Van den Berg, C. G. J. 1992. Resistance of oilseed Brassica spp. to blackleg caused by Leptosphaeria maculans. Can. J. Plant Pathol. 14:56-66.
48. Rouxel, T., and Balesdent, M. H. 2005. The stem canker (blackleg) fungus, Leptosphaeria maculans, enters the genomic era. Mol. Plant Pathol. 6:225-241.
49. Rouxel, T., Mendes-Pereira, E., Brun, H., and Balesdent, M. H. 2004. Species complex of fungal phytopathogens: The Leptosphaeria maculans-L. biglobosa case study. In plant Genome: Biodiversity and Evolution, vol. 2: Lower Groups. A. K. Sharma and A. Sharma, eds. Science Publishers, Inc., Enfield, NH. pp. 33-75.
50. Rouxel, T., Wilner, E., Coudard, L., and Balesdent, M. H. 2003. Screening and identification of resistance to Leptosphaeria maculans (stem canker) in Brassica napus accessions. Euphytica 133:219-231.
51. Roy, N. N. 1984. Interspecific transfer of Brassica juncea-type high blackleg resistance to Brassica napus. Euphytica 33:295-303.
52. Saal, B., Brun, H., Glais, I., and Stuss, D. 2004. Identification of a Brassica juncea-derived recessive gene conferring resistance to Leptosphaeria maculans in oilseed rape. Plant Breed. 123:505-511.
53. Shoemaker, R. A., and Brun, H. 2001. The teleomorph of the weakly aggressive segregate of Leptosphaeria maculans. Can. J. Bot. 79:412-419.
54. Sjödin, C., and Glimelius, K. 1988. Screening for resistance to Phoma lingam (Tode ex Fr.) Desm within Brassicaceae. J. Plant Pathol. 1233:322-332.
55. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. 1997. The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876-4882.
56. West, J. C., Kharbanada, P. D., Barbetti, M. J., and Fitt, B. D. L. 2001. Epidemiology and management of Leptosphaeria (Phoma stem canker) on oilseed rape in Australia, Canada, and Europe. Plant Pathol. 50:10-27.
57. Williams, P. H. 1985. Crucifer Genetic Cooperatives (CrGC) resource book. University of Wisconsin, Madison, WI.
58. Williams, P. H. 1992. Biology of Leptosphaeria maculans. Can. J. Plant Pathol. 14:30-35.
59. Williams, R. H., and Fitt, B. D. L. 1999. Differentiating A and B groups of Leptosphaeria maculans, causal agent of stem canker (blackleg) of oilseed rape. Plant Pathol. 48:161-175.
60. Yu, F., Lydiate, D. J., and Rimmer, S. R. 2005. Identification of two novel genes for blackleg resistance in Brassica napus. Theor. Appl. Genet. 110:969-979.